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Started by upstream project "BIOFORMATS-test-repo" build number 216 originally caused by: Started by upstream project "Trigger" build number 243 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins8072468943800449776.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34292_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:54:04,516 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:54:04,517 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 03:54:04,517 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:54:04,518 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:54:04,519 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:54:04,519 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:54:04,519 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:54:04,519 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:54:04,520 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:54:04,520 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:54:04,521 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:54:04,521 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:54:04,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:54:04,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:54:04,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:54:04,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:54:04,727 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:54:04,728 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:54:04,728 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:54:04,728 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:54:04,728 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 03:54:04,729 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 03:54:04,729 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 209 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-10 03:54:04,739] [main] java.version = 21 [testng] 03:54:04,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:54:04,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:54:04,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-10_03-54-04.log] [testng] 03:54:04,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-10 03:54:04,788] [main] testng.directory = /data [testng] [2024-10-10 03:54:04,788] [main] testng.configDirectory = /config [testng] [2024-10-10 03:54:04,797] [main] testng.multiplier = 1.0 [testng] [2024-10-10 03:54:04,797] [main] testng.in-memory = false [testng] [2024-10-10 03:54:04,798] [main] testng.allow-missing = false [testng] [2024-10-10 03:54:04,798] [main] user.language = en [testng] [2024-10-10 03:54:04,798] [main] user.country = ${user.country} [testng] [2024-10-10 03:54:04,798] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-10 03:59:02,729] [main] ---------------------------------------- [testng] [2024-10-10 03:59:02,729] [main] Total files: 268 [testng] [2024-10-10 03:59:02,729] [main] Scan time: 297.931 s (1111 ms/file) [testng] [2024-10-10 03:59:02,730] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-10 04:06:15,536] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] 04:06:15,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:06:15,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:15,538 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-10_04-06-15.log] [testng] 04:06:15,538 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75544873 - End of configuration. [testng] [2024-10-10 04:06:18,478] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] 04:06:18,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:06:18,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:18,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-10_04-06-18.log] [testng] 04:06:18,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25a8b619 - End of configuration. [testng] [2024-10-10 04:06:19,286] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] 04:06:19,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:06:19,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:19,287 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-10_04-06-19.log] [testng] 04:06:19,287 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e75392f - End of configuration. [testng] [2024-10-10 04:06:20,354] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] 04:06:20,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:06:20,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:20,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-10_04-06-20.log] [testng] 04:06:20,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e0d50f6 - End of configuration. [testng] [2024-10-10 04:06:21,137] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] 04:06:21,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:06:21,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:21,138 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-10_04-06-21.log] [testng] 04:06:21,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e6b155b - End of configuration. [testng] [2024-10-10 04:06:22,073] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] 04:06:22,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:06:22,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:22,074 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-10_04-06-22.log] [testng] 04:06:22,074 |-INFO in ch.qos.logback.core.sift.SiftProcessor@764a0ce2 - End of configuration. [testng] [2024-10-10 04:06:22,777] [pool-1-thread-7] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] 04:06:22,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:06:22,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:22,778 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-10_04-06-22.log] [testng] 04:06:22,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e7b7fbf - End of configuration. [testng] [2024-10-10 04:06:24,000] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] 04:06:24,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:06:24,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:24,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-10_04-06-24.log] [testng] 04:06:24,002 |-INFO in ch.qos.logback.core.sift.SiftProcessor@104fb57a - End of configuration. [testng] [2024-10-10 04:06:24,788] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] 04:06:24,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:06:24,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:24,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-10_04-06-24.log] [testng] 04:06:24,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28b90da6 - End of configuration. [testng] [2024-10-10 04:06:25,491] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] 04:06:25,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:06:25,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:25,492 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-10_04-06-25.log] [testng] 04:06:25,493 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6625c490 - End of configuration. [testng] [2024-10-10 04:06:26,497] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] 04:06:26,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:06:26,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:26,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-10_04-06-26.log] [testng] 04:06:26,498 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2aa9cfbf - End of configuration. [testng] [2024-10-10 04:06:27,187] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] 04:06:27,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:06:27,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:27,188 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-10_04-06-27.log] [testng] 04:06:27,188 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4203f11b - End of configuration. [testng] [2024-10-10 04:06:34,717] [pool-1-thread-10] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-10-10 04:06:37,669] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-10-10 04:06:38,486] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-10-10 04:06:38,855] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-10-10 04:06:41,378] [pool-1-thread-12] Initializing /data/steve/FITS/M13.fits: [testng] [2024-10-10 04:06:41,697] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-10-10 04:06:42,717] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-10-10 04:06:43,557] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-10-10 04:06:47,662] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-10-10 04:06:49,514] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-10-10 04:06:50,519] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-10-10 04:06:51,555] [pool-1-thread-5] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-10-10 04:06:52,828] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-10-10 04:06:54,148] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-10-10 04:06:56,699] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-10-10 04:06:59,639] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-10-10 04:07:00,560] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-10-10 04:07:01,446] [pool-1-thread-10] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-10-10 04:07:01,772] [pool-1-thread-6] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-10-10 04:07:04,807] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-10-10 04:07:06,705] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-10-10 04:07:07,924] [pool-1-thread-8] Initializing /data/steve/FITS/M51.fits: [testng] [2024-10-10 04:07:08,818] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-10-10 04:07:11,717] [pool-1-thread-10] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-10-10 04:07:14,492] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-10-10 04:07:15,025] [pool-1-thread-4] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-10-10 04:07:15,341] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-10-10 04:07:18,487] [pool-1-thread-9] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-10-10 04:07:21,593] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-10-10 04:07:22,838] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-10-10 04:07:25,536] [pool-1-thread-2] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-10-10 04:07:28,669] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-10-10 04:07:31,438] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-10-10 04:07:32,135] [pool-1-thread-6] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-10-10 04:07:33,622] [pool-1-thread-1] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-10-10 04:07:34,438] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-10-10 04:07:38,884] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-10-10 04:07:42,483] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-10-10 04:07:43,425] [pool-1-thread-10] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-10-10 04:07:46,323] [pool-1-thread-11] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-10-10 04:07:49,542] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-10-10 04:07:50,911] [pool-1-thread-9] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-10-10 04:07:53,351] [pool-1-thread-4] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-10-10 04:07:54,653] [pool-1-thread-1] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-10-10 04:07:55,184] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-10-10 04:07:58,962] [pool-1-thread-8] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-10-10 04:07:59,798] [pool-1-thread-2] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-10-10 04:08:02,706] [pool-1-thread-6] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-10-10 04:08:04,659] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-10-10 04:08:05,492] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-10-10 04:08:06,550] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-10-10 04:08:09,661] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-10-10 04:08:10,228] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-10-10 04:08:12,582] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-10-10 04:08:13,883] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-10-10 04:08:14,706] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-10-10 04:08:17,572] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-10-10 04:08:18,261] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-10-10 04:08:18,815] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-10-10 04:08:19,216] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-10-10 04:08:19,811] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-10-10 04:08:22,675] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-10-10 04:08:24,376] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-10-10 04:08:26,064] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-10-10 04:08:26,736] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-10-10 04:08:27,514] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-10-10 04:08:28,210] [pool-1-thread-10] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-10-10 04:08:28,876] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-10-10 04:08:29,548] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-10-10 04:08:32,126] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-10-10 04:08:34,726] [pool-1-thread-7] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-10-10 04:08:35,426] [pool-1-thread-6] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-10-10 04:08:40,062] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-10-10 04:08:41,619] [pool-1-thread-12] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-10-10 04:08:42,876] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-10-10 04:08:44,139] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-10-10 04:08:45,965] [pool-1-thread-7] Initializing /data/steve/FITS/M104.fits: [testng] [2024-10-10 04:08:46,269] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-10-10 04:08:47,106] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-10-10 04:08:47,630] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-10-10 04:08:48,524] [pool-1-thread-3] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-10-10 04:08:52,041] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-10-10 04:08:53,268] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-10-10 04:08:54,791] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-10-10 04:08:55,922] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-10-10 04:08:56,622] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-10-10 04:08:59,061] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-10-10 04:08:59,915] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-10-10 04:09:00,395] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-10-10 04:09:01,251] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-10-10 04:09:03,420] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-10-10 04:09:04,909] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-10-10 04:09:07,590] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-10-10 04:09:09,638] [pool-1-thread-4] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-10-10 04:09:10,839] [pool-1-thread-11] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-10-10 04:09:13,203] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-10-10 04:09:13,602] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-10-10 04:09:16,308] [pool-1-thread-12] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-10-10 04:09:17,775] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-10-10 04:09:18,603] [pool-1-thread-5] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-10-10 04:09:20,607] [pool-1-thread-10] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-10-10 04:09:21,623] [pool-1-thread-9] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-10-10 04:09:23,944] [pool-1-thread-8] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-10-10 04:09:27,247] [pool-1-thread-7] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-10-10 04:09:28,562] [pool-1-thread-4] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-10-10 04:09:29,256] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-10-10 04:09:32,852] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-10-10 04:09:36,098] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-10-10 04:09:36,397] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-10-10 04:09:37,100] [pool-1-thread-12] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-10-10 04:09:39,989] [pool-1-thread-7] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-10-10 04:09:42,379] [pool-1-thread-4] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-10-10 04:09:44,630] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-10-10 04:09:47,381] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-10-10 04:09:49,470] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-10-10 04:09:50,340] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-10-10 04:09:52,505] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-10-10 04:09:53,444] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-10-10 04:09:57,346] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-10-10 04:09:58,363] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-10-10 04:09:59,358] [pool-1-thread-6] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-10-10 04:10:00,317] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-10-10 04:10:00,879] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-10-10 04:10:01,166] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-10-10 04:10:01,488] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-10-10 04:10:02,047] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-10-10 04:10:04,689] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-10-10 04:10:05,462] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-10-10 04:10:07,864] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-10-10 04:10:08,683] [pool-1-thread-3] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-10-10 04:10:11,113] [pool-1-thread-8] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-10-10 04:10:11,364] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-10-10 04:10:12,147] [pool-1-thread-1] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-10-10 04:10:14,497] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-10-10 04:10:14,959] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-10-10 04:10:15,389] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-10-10 04:10:16,271] [pool-1-thread-5] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-10-10 04:10:17,076] [pool-1-thread-7] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-10-10 04:10:18,553] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-10-10 04:10:21,160] [pool-1-thread-9] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-10-10 04:10:22,119] [pool-1-thread-11] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-10-10 04:10:24,085] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-10-10 04:10:26,638] [pool-1-thread-4] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-10-10 04:10:28,921] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-10-10 04:10:29,709] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-10-10 04:10:30,880] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-10-10 04:10:32,174] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-10-10 04:10:33,470] [pool-1-thread-6] Initializing /data/steve/SBIG/M81 M 40s: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 16 minutes 46 seconds Finished: SUCCESS