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Started by upstream project "BIOFORMATS-test-repo" build number 216 originally caused by: Started by upstream project "Trigger" build number 243 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins2449336767426459903.sh + '[' mrw = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34298_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 05:03:35,981 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 05:03:35,983 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 05:03:35,983 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:03:35,984 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:03:35,984 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:03:35,985 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:03:35,985 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:03:35,985 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:03:35,985 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:03:35,986 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:03:35,986 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:03:35,987 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:03:36,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:03:36,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:03:36,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:03:36,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:03:36,194 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:03:36,194 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:03:36,194 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:03:36,194 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:03:36,194 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 05:03:36,195 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 05:03:36,195 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 210 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-10 05:03:36,205] [main] java.version = 21 [testng] 05:03:36,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:03:36,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:36,251 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-10_05-03-36.log] [testng] 05:03:36,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-10 05:03:36,253] [main] testng.directory = /data [testng] [2024-10-10 05:03:36,253] [main] testng.configDirectory = /config [testng] [2024-10-10 05:03:36,263] [main] testng.multiplier = 1.0 [testng] [2024-10-10 05:03:36,264] [main] testng.in-memory = false [testng] [2024-10-10 05:03:36,264] [main] testng.allow-missing = false [testng] [2024-10-10 05:03:36,264] [main] user.language = en [testng] [2024-10-10 05:03:36,264] [main] user.country = ${user.country} [testng] [2024-10-10 05:03:36,264] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-10 05:03:37,446] [main] ---------------------------------------- [testng] [2024-10-10 05:03:37,446] [main] Total files: 19 [testng] [2024-10-10 05:03:37,446] [main] Scan time: 1.182 s (62 ms/file) [testng] [2024-10-10 05:03:37,446] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 19 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-10 05:03:48,539] [pool-1-thread-1] Initializing /data/samples/05-Sep-07_nyc_0531.mrw: [testng] 05:03:48,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:03:48,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:48,541 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-10_05-03-48.log] [testng] 05:03:48,541 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50f4a2c3 - End of configuration. [testng] [2024-10-10 05:03:49,127] [pool-1-thread-12] Initializing /data/samples/400R PICT0003.MRW: [testng] 05:03:49,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:03:49,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:49,129 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-10_05-03-49.log] [testng] 05:03:49,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d87562f - End of configuration. [testng] [2024-10-10 05:03:49,696] [pool-1-thread-11] Initializing /data/samples/1600R PICT0005.MRW: [testng] 05:03:49,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:03:49,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:49,698 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-10_05-03-49.log] [testng] 05:03:49,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@753f39c1 - End of configuration. [testng] [2024-10-10 05:03:50,251] [pool-1-thread-10] Initializing /data/samples/100R PICT0001.MRW: [testng] 05:03:50,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:03:50,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:50,253 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-10_05-03-50.log] [testng] 05:03:50,253 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2715c772 - End of configuration. [testng] [2024-10-10 05:03:50,729] [pool-1-thread-9] Initializing /data/samples/05-Sep-22_statua_0800.mrw: [testng] 05:03:50,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:03:50,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:50,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-10_05-03-50.log] [testng] 05:03:50,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67d52c4b - End of configuration. [testng] [2024-10-10 05:03:51,228] [pool-1-thread-8] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw: [testng] 05:03:51,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:03:51,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:51,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-10_05-03-51.log] [testng] 05:03:51,230 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5544db0d - End of configuration. [testng] [2024-10-10 05:03:51,740] [pool-1-thread-7] Initializing /data/samples/200R PICT0002.MRW: [testng] 05:03:51,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:03:51,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:51,741 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-10_05-03-51.log] [testng] 05:03:51,741 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3009379e - End of configuration. [testng] [2024-10-10 05:03:52,232] [pool-1-thread-6] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw: [testng] 05:03:52,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:03:52,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:52,233 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-10_05-03-52.log] [testng] 05:03:52,234 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b0af725 - End of configuration. [testng] [2024-10-10 05:03:52,753] [pool-1-thread-5] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw: [testng] 05:03:52,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:03:52,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:52,755 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-10_05-03-52.log] [testng] 05:03:52,755 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39103b8a - End of configuration. [testng] [2024-10-10 05:03:53,227] [pool-1-thread-4] Initializing /data/samples/800R PICT0010.MRW: [testng] 05:03:53,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:03:53,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:53,228 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-10_05-03-53.log] [testng] 05:03:53,228 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58964a50 - End of configuration. [testng] [2024-10-10 05:03:53,707] [pool-1-thread-3] Initializing /data/samples/05-Aug-21_duperele_0353.mrw: [testng] 05:03:53,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:03:53,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:53,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-10_05-03-53.log] [testng] 05:03:53,709 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10b5e7be - End of configuration. [testng] [2024-10-10 05:03:54,158] [pool-1-thread-2] Initializing /data/samples/05-Sep-22_statua_0818.mrw: [testng] 05:03:54,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:03:54,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:54,159 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-10_05-03-54.log] [testng] 05:03:54,160 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e7453fd - End of configuration. [testng] [2024-10-10 05:04:04,268] [pool-1-thread-7] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw: [testng] [2024-10-10 05:04:04,811] [pool-1-thread-10] Initializing /data/samples/05-Sep-14_sigma_0698.mrw: [testng] [2024-10-10 05:04:05,365] [pool-1-thread-4] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw: [testng] [2024-10-10 05:04:05,874] [pool-1-thread-5] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw: [testng] [2024-10-10 05:04:06,401] [pool-1-thread-6] Initializing /data/samples/05-Sep-22_statua_0837.mrw: [testng] [2024-10-10 05:04:06,956] [pool-1-thread-11] Initializing /data/samples/3200R PICT0006.MRW: [testng] [2024-10-10 05:04:07,542] [pool-1-thread-8] Initializing /data/samples/05-Sep-03_duperele_0472.mrw: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1007, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 42 seconds Finished: SUCCESS