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Started by upstream project "BIOFORMATS-test-repo" build number 217 originally caused by: Started by upstream project "Trigger" build number 244 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins15212995411622114406.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34383_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:39:17,281 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:39:17,283 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 01:39:17,283 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:39:17,284 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:39:17,284 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:39:17,284 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:39:17,284 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:39:17,284 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:39:17,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:39:17,285 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:39:17,285 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:39:17,285 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:39:17,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:39:17,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:39:17,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:39:17,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:39:17,525 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:39:17,525 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:39:17,525 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:39:17,526 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:39:17,526 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 01:39:17,527 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 01:39:17,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 242 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-11 01:39:17,536] [main] java.version = 1.8.0_342 [testng] 01:39:17,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:39:17,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:39:17,581 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-11_01-39-17.log] [testng] 01:39:17,582 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-11 01:39:17,584] [main] testng.directory = /data [testng] [2024-10-11 01:39:17,584] [main] testng.configDirectory = /config [testng] [2024-10-11 01:39:17,595] [main] testng.multiplier = 1.0 [testng] [2024-10-11 01:39:17,596] [main] testng.in-memory = false [testng] [2024-10-11 01:39:17,596] [main] testng.allow-missing = false [testng] [2024-10-11 01:39:17,596] [main] user.language = en [testng] [2024-10-11 01:39:17,596] [main] user.country = ${user.country} [testng] [2024-10-11 01:39:17,596] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-11 01:40:10,717] [main] ---------------------------------------- [testng] [2024-10-11 01:40:10,718] [main] Total files: 21 [testng] [2024-10-11 01:40:10,718] [main] Scan time: 53.121 s (2529 ms/file) [testng] [2024-10-11 01:40:10,718] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-11 01:41:29,175] [pool-1-thread-1] Initializing /data/stefan/001_q04.txt: [testng] 01:41:29,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:41:29,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:41:29,177 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-11_01-41-29.log] [testng] 01:41:29,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@327d59d2 - End of configuration. [testng] [2024-10-11 01:41:32,519] [pool-1-thread-12] Initializing /data/stefan/001_q11.txt: [testng] 01:41:32,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:41:32,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:41:32,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-11_01-41-32.log] [testng] 01:41:32,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12d78790 - End of configuration. [testng] [2024-10-11 01:41:39,729] [pool-1-thread-11] Initializing /data/stefan/001_q03.txt: [testng] 01:41:39,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:41:39,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:41:39,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-11_01-41-39.log] [testng] 01:41:39,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25a08da6 - End of configuration. [testng] [2024-10-11 01:41:42,874] [pool-1-thread-10] Initializing /data/stefan/001_q07.txt: [testng] 01:41:42,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:41:42,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:41:42,875 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-11_01-41-42.log] [testng] 01:41:42,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e896bbb - End of configuration. [testng] [2024-10-11 01:41:48,737] [pool-1-thread-9] Initializing /data/stefan/001_q13.txt: [testng] 01:41:48,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:41:48,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:41:48,738 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-11_01-41-48.log] [testng] 01:41:48,739 |-INFO in ch.qos.logback.core.sift.SiftProcessor@680499b5 - End of configuration. [testng] [2024-10-11 01:41:52,138] [pool-1-thread-8] Initializing /data/stefan/001_q18.txt: [testng] 01:41:52,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:41:52,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:41:52,138 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-11_01-41-52.log] [testng] 01:41:52,139 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f86da0c - End of configuration. [testng] [2024-10-11 01:41:55,442] [pool-1-thread-7] Initializing /data/stefan/001_q01.txt: [testng] 01:41:55,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:41:55,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:41:55,443 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-11_01-41-55.log] [testng] 01:41:55,443 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dc36da5 - End of configuration. [testng] [2024-10-11 01:41:58,053] [pool-1-thread-6] Initializing /data/stefan/001_q15.txt: [testng] 01:41:58,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:41:58,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:41:58,054 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-11_01-41-58.log] [testng] 01:41:58,055 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78e886b0 - End of configuration. [testng] [2024-10-11 01:42:00,715] [pool-1-thread-5] Initializing /data/stefan/001_q10.txt: [testng] 01:42:00,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:42:00,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:00,716 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-11_01-42-00.log] [testng] 01:42:00,716 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38c39606 - End of configuration. [testng] [2024-10-11 01:42:07,643] [pool-1-thread-4] Initializing /data/stefan/001_q05.txt: [testng] 01:42:07,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:42:07,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:07,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-11_01-42-07.log] [testng] 01:42:07,644 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fdf92a7 - End of configuration. [testng] [2024-10-11 01:42:10,532] [pool-1-thread-3] Initializing /data/stefan/001_q09.txt: [testng] 01:42:10,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:42:10,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:10,533 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-11_01-42-10.log] [testng] 01:42:10,534 |-INFO in ch.qos.logback.core.sift.SiftProcessor@522011cd - End of configuration. [testng] [2024-10-11 01:42:17,538] [pool-1-thread-2] Initializing /data/stefan/001_q06.txt: [testng] 01:42:17,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:42:17,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:17,538 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-11_01-42-17.log] [testng] 01:42:17,539 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b823c83 - End of configuration. [testng] [2024-10-11 01:42:59,023] [pool-1-thread-11] Initializing /data/stefan/001_q14.txt: [testng] [2024-10-11 01:43:02,409] [pool-1-thread-1] Initializing /data/stefan/001_q16.txt: [testng] [2024-10-11 01:43:06,632] [pool-1-thread-7] Initializing /data/stefan/001_q08.txt: [testng] [2024-10-11 01:43:12,785] [pool-1-thread-8] Initializing /data/stefan/001_q12.txt: [testng] [2024-10-11 01:43:19,105] [pool-1-thread-2] Initializing /data/stefan/001_q02.txt: [testng] [2024-10-11 01:43:22,227] [pool-1-thread-9] Initializing /data/stefan/001_q17.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 5 minutes 1 second Finished: SUCCESS