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Started by upstream project "BIOFORMATS-test-repo" build number 217 originally caused by: Started by upstream project "Trigger" build number 244 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins17548721557685836389.sh + '[' fei = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34395_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:58:34,413 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:58:34,414 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 01:58:34,414 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:58:34,415 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:58:34,416 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:58:34,416 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:58:34,416 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:58:34,416 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:58:34,417 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:58:34,417 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:58:34,417 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:58:34,417 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:58:34,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:58:34,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:58:35,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:58:35,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:58:35,229 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:58:35,229 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:58:35,229 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:58:35,230 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:58:35,230 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 01:58:35,231 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 01:58:35,231 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 814 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-11 01:58:35,240] [main] java.version = 1.8.0_342 [testng] 01:58:35,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:58:35,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:35,427 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-11_01-58-35.log] [testng] 01:58:35,429 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-11 01:58:35,430] [main] testng.directory = /data [testng] [2024-10-11 01:58:35,431] [main] testng.configDirectory = /config [testng] [2024-10-11 01:58:35,442] [main] testng.multiplier = 1.0 [testng] [2024-10-11 01:58:35,443] [main] testng.in-memory = false [testng] [2024-10-11 01:58:35,443] [main] testng.allow-missing = false [testng] [2024-10-11 01:58:35,443] [main] user.language = en [testng] [2024-10-11 01:58:35,443] [main] user.country = ${user.country} [testng] [2024-10-11 01:58:35,443] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-11 01:58:52,028] [main] ---------------------------------------- [testng] [2024-10-11 01:58:52,028] [main] Total files: 21 [testng] [2024-10-11 01:58:52,028] [main] Scan time: 16.585 s (789 ms/file) [testng] [2024-10-11 01:58:52,028] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-11 01:59:34,163] [pool-1-thread-1] Initializing /data/antoine/Tile_001-002-000_0-000.tif: [testng] 01:59:34,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:59:34,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:34,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-11_01-59-34.log] [testng] 01:59:34,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f82ddc4 - End of configuration. [testng] [2024-10-11 01:59:36,329] [pool-1-thread-12] Initializing /data/venu/VENU_Seven.TIF: [testng] 01:59:36,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:59:36,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:36,330 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-11_01-59-36.log] [testng] 01:59:36,331 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1057fa20 - End of configuration. [testng] [2024-10-11 01:59:38,262] [pool-1-thread-11] Initializing /data/venu/VENU_Four.TIF: [testng] 01:59:38,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:59:38,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:38,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-11_01-59-38.log] [testng] 01:59:38,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45025d2 - End of configuration. [testng] [2024-10-11 01:59:39,931] [pool-1-thread-10] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif: [testng] 01:59:39,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:59:39,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:39,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-11_01-59-39.log] [testng] 01:59:39,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44f84878 - End of configuration. [testng] [2024-10-11 01:59:42,087] [pool-1-thread-9] Initializing /data/venu/VENU03.IMG: [testng] 01:59:42,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:59:42,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:42,088 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-11_01-59-42.log] [testng] 01:59:42,088 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32cdef79 - End of configuration. [testng] [2024-10-11 01:59:42,771] [pool-1-thread-8] Initializing /data/qa-11061/Tile_020-009-000_0.tif: [testng] 01:59:42,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:59:42,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:42,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-11_01-59-42.log] [testng] 01:59:42,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67fb751b - End of configuration. [testng] [2024-10-11 01:59:44,520] [pool-1-thread-7] Initializing /data/venu/VENU01.IMG: [testng] 01:59:44,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:59:44,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:44,521 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-11_01-59-44.log] [testng] 01:59:44,521 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a95763d - End of configuration. [testng] [2024-10-11 01:59:45,171] [pool-1-thread-6] Initializing /data/venu/VENU_Six.TIF: [testng] 01:59:45,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:59:45,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:45,172 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-11_01-59-45.log] [testng] 01:59:45,172 |-INFO in ch.qos.logback.core.sift.SiftProcessor@681717c1 - End of configuration. [testng] [2024-10-11 01:59:47,689] [pool-1-thread-5] Initializing /data/venu/VENU02.TIF: [testng] 01:59:47,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:59:47,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:47,690 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-11_01-59-47.log] [testng] 01:59:47,691 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7438359d - End of configuration. [testng] [2024-10-11 01:59:49,683] [pool-1-thread-4] Initializing /data/steffen/Batman_008.tif: [testng] 01:59:49,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:59:49,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:49,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-11_01-59-49.log] [testng] 01:59:49,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dc444eb - End of configuration. [testng] [2024-10-11 01:59:51,742] [pool-1-thread-3] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif: [testng] 01:59:51,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:59:51,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:51,743 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-11_01-59-51.log] [testng] 01:59:51,743 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a7076a0 - End of configuration. [testng] [2024-10-11 01:59:53,454] [pool-1-thread-2] Initializing /data/venu/VENU_Five.TIF: [testng] 01:59:53,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:59:53,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:53,455 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-11_01-59-53.log] [testng] 01:59:53,456 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64e6936 - End of configuration. [testng] [2024-10-11 02:00:01,628] [pool-1-thread-7] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif: [testng] [2024-10-11 02:00:04,080] [pool-1-thread-9] Initializing /data/venu/VENU.TIF: [testng] [2024-10-11 02:00:08,782] [pool-1-thread-10] Initializing /data/venu/VENU_Eight.TIF: [testng] [2024-10-11 02:00:10,379] [pool-1-thread-3] Initializing /data/venu/VENU01.TIF: [testng] [2024-10-11 02:00:12,355] [pool-1-thread-4] Initializing /data/venu/VENU03.TIF: [testng] [2024-10-11 02:00:13,993] [pool-1-thread-5] Initializing /data/venu/VENU02.IMG: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 54 seconds Finished: SUCCESS