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Started by upstream project "BIOFORMATS-test-repo" build number 217 originally caused by: Started by upstream project "Trigger" build number 244 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins10011218305118351385.sh + '[' jpeg = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34400_merge_ci -v /uod/idr/repos/curated/jpeg:/data -v /uod/idr-scratch/merge-ci/curated/jpeg:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:07:45,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:07:46,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:07:46,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:07:46,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:07:46,144 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:07:46,144 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:07:46,144 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:07:46,144 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:07:46,144 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1139b2f3 - End of configuration. [testng] 02:07:46,145 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3f197a46 - Registering current configuration as safe fallback point [testng] 02:07:46,145 |-INFO in ch.qos.logback.classic.util.ContextInitializer@636be97c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 524 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-11 02:07:46,155] [main] java.version = 1.8.0_342 [testng] 02:07:46,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:07:46,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:46,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-11_02-07-46.log] [testng] 02:07:46,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-11 02:07:46,266] [main] testng.directory = /data [testng] [2024-10-11 02:07:46,267] [main] testng.configDirectory = /config [testng] [2024-10-11 02:07:46,283] [main] testng.multiplier = 1.0 [testng] [2024-10-11 02:07:46,283] [main] testng.in-memory = false [testng] [2024-10-11 02:07:46,283] [main] testng.allow-missing = false [testng] [2024-10-11 02:07:46,283] [main] user.language = en [testng] [2024-10-11 02:07:46,283] [main] user.country = ${user.country} [testng] [2024-10-11 02:07:46,283] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-11 02:07:50,041] [main] ---------------------------------------- [testng] [2024-10-11 02:07:50,041] [main] Total files: 12 [testng] [2024-10-11 02:07:50,041] [main] Scan time: 3.758 s (313 ms/file) [testng] [2024-10-11 02:07:50,041] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 12 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-11 02:08:17,809] [pool-1-thread-1] Initializing /data/darwinjob/T1_3_1_SST11D_0059.jpg: [testng] 02:08:17,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:08:17,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:17,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-11_02-08-17.log] [testng] 02:08:17,811 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31d51a14 - End of configuration. [testng] [2024-10-11 02:08:19,927] [pool-1-thread-12] Initializing /data/gh-4061/magick1x2.jpg: [testng] 02:08:19,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:08:19,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:19,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-11_02-08-19.log] [testng] 02:08:19,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e51a264 - End of configuration. [testng] [2024-10-11 02:08:21,600] [pool-1-thread-11] Initializing /data/gh-4061/magick2x2.jpg: [testng] 02:08:21,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:08:21,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:21,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-11_02-08-21.log] [testng] 02:08:21,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a977392 - End of configuration. [testng] [2024-10-11 02:08:23,278] [pool-1-thread-10] Initializing /data/big-images/8kx8k.jpg: [testng] 02:08:23,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:08:23,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:23,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-11_02-08-23.log] [testng] 02:08:23,279 |-INFO in ch.qos.logback.core.sift.SiftProcessor@355cdc26 - End of configuration. [testng] [2024-10-11 02:08:25,777] [pool-1-thread-9] Initializing /data/human-embryology-2018-01-04/CS17_N365_491_whole.jpg: [testng] 02:08:25,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:08:25,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:25,778 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-11_02-08-25.log] [testng] 02:08:25,779 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25b9857a - End of configuration. [testng] [2024-10-11 02:08:32,011] [pool-1-thread-8] Initializing /data/gh-4061/magick2x1.jpg: [testng] 02:08:32,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:08:32,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:32,012 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-11_02-08-32.log] [testng] 02:08:32,013 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e38618a - End of configuration. [testng] [2024-10-11 02:08:33,567] [pool-1-thread-7] Initializing /data/big-images/2kx2k.jpg: [testng] 02:08:33,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:08:33,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:33,568 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-11_02-08-33.log] [testng] 02:08:33,569 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6831da68 - End of configuration. [testng] [2024-10-11 02:08:34,004] [pool-1-thread-6] Initializing /data/samples/d170 170C +GAL-2006-0006_c6.JPG: [testng] 02:08:34,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:08:34,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:34,006 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-11_02-08-34.log] [testng] 02:08:34,006 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ac08146 - End of configuration. [testng] [2024-10-11 02:08:34,116] [pool-1-thread-5] Initializing /data/big-images/PB_9217_Retina_04 - 2010-07-16 19.04.48.ndpi.jpg: [testng] 02:08:34,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:08:34,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:34,117 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-11_02-08-34.log] [testng] 02:08:34,117 |-INFO in ch.qos.logback.core.sift.SiftProcessor@659f4cf8 - End of configuration. [testng] [2024-10-11 02:08:37,857] [pool-1-thread-4] Initializing /data/samples/wall-e2.jpg: [testng] 02:08:37,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:08:37,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:37,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-11_02-08-37.log] [testng] 02:08:37,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@184d66b7 - End of configuration. [testng] [2024-10-11 02:08:38,004] [pool-1-thread-3] Initializing /data/big-images/4kx4k.jpg: [testng] 02:08:38,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:08:38,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:38,005 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-11_02-08-38.log] [testng] 02:08:38,005 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f512ae4 - End of configuration. [testng] [2024-10-11 02:08:38,688] [pool-1-thread-2] Initializing /data/samples/Face.jpg: [testng] 02:08:38,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:08:38,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:38,689 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-11_02-08-38.log] [testng] 02:08:38,690 |-INFO in ch.qos.logback.core.sift.SiftProcessor@337ed6ef - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 636, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 42 seconds Finished: SUCCESS