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Started by upstream project "BIOFORMATS-test-repo" build number 217 originally caused by: Started by upstream project "Trigger" build number 244 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins6141999250594508545.sh + '[' targa = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34405_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:09:28,621 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:09:28,622 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 02:09:28,622 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:09:28,623 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:09:28,623 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:09:28,624 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:09:28,624 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:09:28,624 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:09:28,625 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:09:28,625 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:09:28,625 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:09:28,625 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:09:28,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:09:28,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:09:28,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:09:28,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:09:28,889 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:09:28,890 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:09:28,890 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:09:28,891 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:09:28,891 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 02:09:28,892 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 02:09:28,892 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 267 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-11 02:09:28,903] [main] java.version = 1.8.0_342 [testng] 02:09:28,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:09:28,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:28,949 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-11_02-09-28.log] [testng] 02:09:28,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-11 02:09:28,952] [main] testng.directory = /data [testng] [2024-10-11 02:09:28,952] [main] testng.configDirectory = /config [testng] [2024-10-11 02:09:28,964] [main] testng.multiplier = 1.0 [testng] [2024-10-11 02:09:28,965] [main] testng.in-memory = false [testng] [2024-10-11 02:09:28,965] [main] testng.allow-missing = false [testng] [2024-10-11 02:09:28,965] [main] user.language = en [testng] [2024-10-11 02:09:28,965] [main] user.country = ${user.country} [testng] [2024-10-11 02:09:28,965] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-11 02:09:30,735] [main] ---------------------------------------- [testng] [2024-10-11 02:09:30,735] [main] Total files: 21 [testng] [2024-10-11 02:09:30,735] [main] Scan time: 1.77 s (84 ms/file) [testng] [2024-10-11 02:09:30,735] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-11 02:09:41,696] [pool-1-thread-1] Initializing /data/samples/UCM8.TGA: [testng] 02:09:41,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:09:41,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:41,697 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-11_02-09-41.log] [testng] 02:09:41,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@eb46b05 - End of configuration. [testng] [2024-10-11 02:09:41,891] [pool-1-thread-12] Initializing /data/samples/XING_B24.TGA: [testng] 02:09:41,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:09:41,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:41,892 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-11_02-09-41.log] [testng] 02:09:41,892 |-INFO in ch.qos.logback.core.sift.SiftProcessor@205ca225 - End of configuration. [testng] [2024-10-11 02:09:42,221] [pool-1-thread-11] Initializing /data/samples/MARBLES.TGA: [testng] 02:09:42,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:09:42,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:42,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-11_02-09-42.log] [testng] 02:09:42,224 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39f190a0 - End of configuration. [testng] [2024-10-11 02:09:42,623] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA: [testng] 02:09:42,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:09:42,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:42,624 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-11_02-09-42.log] [testng] 02:09:42,624 |-INFO in ch.qos.logback.core.sift.SiftProcessor@777111c7 - End of configuration. [testng] [2024-10-11 02:09:43,022] [pool-1-thread-9] Initializing /data/samples/FLAG_T16.TGA: [testng] 02:09:43,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:09:43,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:43,023 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-11_02-09-43.log] [testng] 02:09:43,024 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33526587 - End of configuration. [testng] [2024-10-11 02:09:43,245] [pool-1-thread-8] Initializing /data/samples/FLAG_B24.TGA: [testng] 02:09:43,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:09:43,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:43,246 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-11_02-09-43.log] [testng] 02:09:43,246 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34ca757f - End of configuration. [testng] [2024-10-11 02:09:43,634] [pool-1-thread-7] Initializing /data/samples/CTC16.TGA: [testng] 02:09:43,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:09:43,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:43,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-11_02-09-43.log] [testng] 02:09:43,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6585d43c - End of configuration. [testng] [2024-10-11 02:09:44,314] [pool-1-thread-6] Initializing /data/samples/XING_B16.TGA: [testng] 02:09:44,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:09:44,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:44,315 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-11_02-09-44.log] [testng] 02:09:44,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7571cc91 - End of configuration. [testng] [2024-10-11 02:09:44,530] [pool-1-thread-5] Initializing /data/samples/CCM8.TGA: [testng] 02:09:44,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:09:44,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:44,531 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-11_02-09-44.log] [testng] 02:09:44,531 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14fdfdb1 - End of configuration. [testng] [2024-10-11 02:09:44,967] [pool-1-thread-4] Initializing /data/samples/FLAG_B32.TGA: [testng] 02:09:44,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:09:44,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:44,968 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-11_02-09-44.log] [testng] 02:09:44,969 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e91038d - End of configuration. [testng] [2024-10-11 02:09:45,168] [pool-1-thread-3] Initializing /data/samples/FLAG_B16.TGA: [testng] 02:09:45,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:09:45,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:45,169 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-11_02-09-45.log] [testng] 02:09:45,169 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71ef9c72 - End of configuration. [testng] [2024-10-11 02:09:45,592] [pool-1-thread-2] Initializing /data/samples/XING_T24.TGA: [testng] 02:09:45,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:09:45,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:45,593 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-11_02-09-45.log] [testng] 02:09:45,593 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6188c4d3 - End of configuration. [testng] [2024-10-11 02:09:50,864] [pool-1-thread-2] Initializing /data/samples/CTC24.TGA: [testng] [2024-10-11 02:09:51,103] [pool-1-thread-8] Initializing /data/samples/FLAG_T32.TGA: [testng] [2024-10-11 02:09:51,416] [pool-1-thread-9] Initializing /data/samples/CBW8.TGA: [testng] [2024-10-11 02:09:51,672] [pool-1-thread-3] Initializing /data/samples/XING_B32.TGA: [testng] [2024-10-11 02:09:52,034] [pool-1-thread-4] Initializing /data/samples/UTC24.TGA: [testng] [2024-10-11 02:09:52,445] [pool-1-thread-6] Initializing /data/samples/UTC32.TGA: [testng] [2024-10-11 02:09:52,781] [pool-1-thread-10] Initializing /data/samples/UBW8.TGA: [testng] [2024-10-11 02:09:53,083] [pool-1-thread-12] Initializing /data/samples/XING_T32.TGA: [testng] [2024-10-11 02:09:53,290] [pool-1-thread-1] Initializing /data/samples/UTC16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 30 seconds Finished: SUCCESS