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Started by upstream project "BIOFORMATS-test-repo" build number 217 originally caused by: Started by upstream project "Trigger" build number 244 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins18175854662997284483.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34456_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 04:44:21,840 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:44:21,842 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 04:44:21,842 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:44:21,843 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:44:21,843 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:44:21,843 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:44:21,844 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:44:21,844 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:44:21,844 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:44:21,845 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:44:21,845 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:44:21,845 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:44:22,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:44:22,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:44:22,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:44:22,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:44:22,103 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:44:22,103 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:44:22,103 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:44:22,104 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:44:22,104 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 04:44:22,105 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 04:44:22,105 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 261 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-11 04:44:22,114] [main] java.version = 1.8.0_342 [testng] 04:44:22,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:44:22,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:44:22,163 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-11_04-44-22.log] [testng] 04:44:22,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-11 04:44:22,166] [main] testng.directory = /data [testng] [2024-10-11 04:44:22,167] [main] testng.configDirectory = /config [testng] [2024-10-11 04:44:22,179] [main] testng.multiplier = 1.0 [testng] [2024-10-11 04:44:22,179] [main] testng.in-memory = false [testng] [2024-10-11 04:44:22,179] [main] testng.allow-missing = false [testng] [2024-10-11 04:44:22,179] [main] user.language = en [testng] [2024-10-11 04:44:22,179] [main] user.country = ${user.country} [testng] [2024-10-11 04:44:22,179] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-11 04:50:57,567] [main] ---------------------------------------- [testng] [2024-10-11 04:50:57,567] [main] Total files: 268 [testng] [2024-10-11 04:50:57,567] [main] Scan time: 395.388 s (1475 ms/file) [testng] [2024-10-11 04:50:57,567] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-11 05:00:16,882] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] 05:00:16,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:00:16,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:16,884 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-11_05-00-16.log] [testng] 05:00:16,884 |-INFO in ch.qos.logback.core.sift.SiftProcessor@934799d - End of configuration. [testng] [2024-10-11 05:00:20,518] [pool-1-thread-12] Initializing /data/steve/TIFF/HAFF SEM: [testng] 05:00:20,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:00:20,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:20,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-11_05-00-20.log] [testng] 05:00:20,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@138d4666 - End of configuration. [testng] [2024-10-11 05:00:23,434] [pool-1-thread-11] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] 05:00:23,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:00:23,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:23,435 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-11_05-00-23.log] [testng] 05:00:23,435 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d861691 - End of configuration. [testng] [2024-10-11 05:00:26,303] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] 05:00:26,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:00:26,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:26,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-11_05-00-26.log] [testng] 05:00:26,305 |-INFO in ch.qos.logback.core.sift.SiftProcessor@739296e8 - End of configuration. [testng] [2024-10-11 05:00:27,546] [pool-1-thread-9] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] 05:00:27,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:00:27,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:27,547 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-11_05-00-27.log] [testng] 05:00:27,547 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21f7c18b - End of configuration. [testng] [2024-10-11 05:00:28,651] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] 05:00:28,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:00:28,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:28,652 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-11_05-00-28.log] [testng] 05:00:28,652 |-INFO in ch.qos.logback.core.sift.SiftProcessor@267fdbe6 - End of configuration. [testng] [2024-10-11 05:00:29,746] [pool-1-thread-7] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] 05:00:29,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:00:29,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:29,747 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-11_05-00-29.log] [testng] 05:00:29,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e4dd4f6 - End of configuration. [testng] [2024-10-11 05:00:33,420] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] 05:00:33,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:00:33,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:33,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-11_05-00-33.log] [testng] 05:00:33,421 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10691535 - End of configuration. [testng] [2024-10-11 05:00:34,196] [pool-1-thread-5] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] 05:00:34,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:00:34,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:34,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-11_05-00-34.log] [testng] 05:00:34,198 |-INFO in ch.qos.logback.core.sift.SiftProcessor@501ed94f - End of configuration. [testng] [2024-10-11 05:00:35,704] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] 05:00:35,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:00:35,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:35,705 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-11_05-00-35.log] [testng] 05:00:35,705 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32ecb8e5 - End of configuration. [testng] [2024-10-11 05:00:36,906] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] 05:00:36,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:00:36,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:36,907 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-11_05-00-36.log] [testng] 05:00:36,907 |-INFO in ch.qos.logback.core.sift.SiftProcessor@625d3e37 - End of configuration. [testng] [2024-10-11 05:00:38,199] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] 05:00:38,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:00:38,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:38,200 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-11_05-00-38.log] [testng] 05:00:38,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@251b4fed - End of configuration. [testng] [2024-10-11 05:00:46,336] [pool-1-thread-6] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-10-11 05:00:47,430] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-10-11 05:00:48,853] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-10-11 05:00:50,191] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-10-11 05:00:53,656] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-10-11 05:00:57,803] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-10-11 05:00:59,050] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-10-11 05:01:07,563] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-10-11 05:01:08,269] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-10-11 05:01:09,619] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-10-11 05:01:10,641] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-10-11 05:01:11,558] [pool-1-thread-1] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-10-11 05:01:13,338] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-10-11 05:01:16,534] [pool-1-thread-5] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-10-11 05:01:17,143] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-10-11 05:01:20,212] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-10-11 05:01:22,420] [pool-1-thread-9] Initializing /data/steve/FITS/M51.fits: [testng] [2024-10-11 05:01:23,490] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-10-11 05:01:25,295] [pool-1-thread-5] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-10-11 05:01:27,152] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-10-11 05:01:29,032] [pool-1-thread-8] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-10-11 05:01:32,394] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-10-11 05:01:33,290] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-10-11 05:01:36,180] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-10-11 05:01:36,914] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-10-11 05:01:37,668] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-10-11 05:01:38,464] [pool-1-thread-2] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-10-11 05:01:42,846] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-10-11 05:01:44,480] [pool-1-thread-10] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-10-11 05:01:47,164] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-10-11 05:01:49,423] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-10-11 05:01:52,801] [pool-1-thread-4] Initializing /data/steve/FITS/M104.fits: [testng] [2024-10-11 05:01:53,353] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-10-11 05:01:54,886] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-10-11 05:01:56,124] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-10-11 05:01:57,309] [pool-1-thread-11] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-10-11 05:02:00,069] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-10-11 05:02:01,938] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-10-11 05:02:03,741] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-10-11 05:02:04,400] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-10-11 05:02:05,902] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-10-11 05:02:06,461] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-10-11 05:02:07,399] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-10-11 05:02:11,761] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-10-11 05:02:16,205] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-10-11 05:02:20,822] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-10-11 05:02:24,518] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-10-11 05:02:26,595] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-10-11 05:02:27,901] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-10-11 05:02:31,955] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-10-11 05:02:33,146] [pool-1-thread-7] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-10-11 05:02:34,218] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-10-11 05:02:38,370] [pool-1-thread-10] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-10-11 05:02:40,258] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-10-11 05:02:41,538] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-10-11 05:02:42,873] [pool-1-thread-1] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-10-11 05:02:44,760] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-10-11 05:02:45,512] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-10-11 05:02:49,814] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-10-11 05:02:50,900] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-10-11 05:02:52,503] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-10-11 05:02:54,412] [pool-1-thread-4] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-10-11 05:02:58,785] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-10-11 05:03:03,245] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-10-11 05:03:04,234] [pool-1-thread-11] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-10-11 05:03:06,444] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-10-11 05:03:07,916] [pool-1-thread-6] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-10-11 05:03:12,542] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-10-11 05:03:14,566] [pool-1-thread-5] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-10-11 05:03:16,733] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-10-11 05:03:18,219] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-10-11 05:03:19,529] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-10-11 05:03:20,990] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-10-11 05:03:22,623] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-10-11 05:03:25,309] [pool-1-thread-1] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-10-11 05:03:27,291] [pool-1-thread-2] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-10-11 05:03:31,280] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-10-11 05:03:34,894] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-10-11 05:03:36,192] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-10-11 05:03:37,421] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-10-11 05:03:38,061] [pool-1-thread-3] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-10-11 05:03:39,552] [pool-1-thread-6] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-10-11 05:03:44,220] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-10-11 05:03:48,175] [pool-1-thread-9] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-10-11 05:03:49,868] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-10-11 05:03:55,882] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-10-11 05:04:00,955] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-10-11 05:04:01,864] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-10-11 05:04:03,078] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-10-11 05:04:04,504] [pool-1-thread-8] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-10-11 05:04:05,917] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-10-11 05:04:06,959] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-10-11 05:04:07,954] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-10-11 05:04:08,898] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-10-11 05:04:15,941] [pool-1-thread-3] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-10-11 05:04:20,447] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-10-11 05:04:25,151] [pool-1-thread-4] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-10-11 05:04:29,564] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-10-11 05:04:31,593] [pool-1-thread-6] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-10-11 05:04:35,845] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-10-11 05:04:36,910] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-10-11 05:04:38,353] [pool-1-thread-1] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-10-11 05:04:39,618] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-10-11 05:04:40,557] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-10-11 05:04:42,160] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-10-11 05:04:49,241] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-10-11 05:04:55,842] [pool-1-thread-2] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-10-11 05:04:59,997] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-10-11 05:05:04,118] [pool-1-thread-9] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-10-11 05:05:04,621] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-10-11 05:05:13,970] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-10-11 05:05:20,820] [pool-1-thread-10] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-10-11 05:05:22,178] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-10-11 05:05:23,709] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-10-11 05:05:30,403] [pool-1-thread-12] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-10-11 05:05:34,508] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-10-11 05:05:36,605] [pool-1-thread-11] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-10-11 05:05:40,735] [pool-1-thread-5] Initializing /data/steve/FITS/M13.fits: [testng] [2024-10-11 05:05:41,154] [pool-1-thread-3] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-10-11 05:05:48,109] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-10-11 05:05:49,566] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-10-11 05:05:50,981] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-10-11 05:05:52,316] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-10-11 05:05:53,565] [pool-1-thread-10] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-10-11 05:05:54,430] [pool-1-thread-7] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-10-11 05:05:55,614] [pool-1-thread-9] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-10-11 05:06:01,454] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-10-11 05:06:02,986] [pool-1-thread-9] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-10-11 05:06:04,844] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-10-11 05:06:07,646] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-10-11 05:06:17,290] [pool-1-thread-7] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-10-11 05:06:18,769] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-10-11 05:06:20,283] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-10-11 05:06:21,879] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-10-11 05:06:22,574] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-10-11 05:06:24,143] [pool-1-thread-8] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-10-11 05:06:28,167] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-10-11 05:06:31,914] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-10-11 05:06:37,954] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-10-11 05:06:42,220] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-10-11 05:06:43,586] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-10-11 05:06:47,326] [pool-1-thread-4] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-10-11 05:06:49,411] [pool-1-thread-1] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-10-11 05:06:53,210] [pool-1-thread-7] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-10-11 05:06:56,332] [pool-1-thread-10] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-10-11 05:06:57,770] [pool-1-thread-6] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-10-11 05:07:00,882] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-10-11 05:07:04,485] [pool-1-thread-2] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 23 minutes 10 seconds Finished: SUCCESS