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Started by upstream project "BIOFORMATS-test-repo" build number 217 originally caused by: Started by upstream project "Trigger" build number 244 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins15372621642849991759.sh + '[' apng = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34494_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 07:26:34,803 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 07:26:34,804 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 07:26:34,804 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:26:34,806 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:26:34,806 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:26:34,806 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:26:34,806 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:26:34,806 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:26:34,807 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:26:34,807 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:26:34,807 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:26:34,807 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:26:35,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:26:35,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:26:35,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:26:35,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:26:35,075 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:26:35,076 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:26:35,076 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:26:35,076 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:26:35,076 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 07:26:35,077 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 07:26:35,077 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 270 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-11 07:26:35,087] [main] java.version = 1.8.0_342 [testng] 07:26:35,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:26:35,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:26:35,136 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-11_07-26-35.log] [testng] 07:26:35,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-11 07:26:35,140] [main] testng.directory = /data [testng] [2024-10-11 07:26:35,140] [main] testng.configDirectory = /config [testng] [2024-10-11 07:26:35,157] [main] testng.multiplier = 1.0 [testng] [2024-10-11 07:26:35,157] [main] testng.in-memory = false [testng] [2024-10-11 07:26:35,157] [main] testng.allow-missing = false [testng] [2024-10-11 07:26:35,157] [main] user.language = en [testng] [2024-10-11 07:26:35,157] [main] user.country = ${user.country} [testng] [2024-10-11 07:26:35,157] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-11 07:26:35,855] [main] ---------------------------------------- [testng] [2024-10-11 07:26:35,855] [main] Total files: 21 [testng] [2024-10-11 07:26:35,855] [main] Scan time: 0.698 s (33 ms/file) [testng] [2024-10-11 07:26:35,855] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-11 07:26:37,781] [pool-1-thread-1] Initializing /data/samples/daniel_coltri_two.png: [testng] 07:26:37,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:26:37,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:26:37,783 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-11_07-26-37.log] [testng] 07:26:37,783 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b41670c - End of configuration. [testng] [2024-10-11 07:26:37,843] [pool-1-thread-12] Initializing /data/samples/atom.png: [testng] 07:26:37,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:26:37,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:26:37,844 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-11_07-26-37.log] [testng] 07:26:37,844 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3938bde7 - End of configuration. [testng] [2024-10-11 07:26:37,858] [pool-1-thread-11] Initializing /data/colin/test.sfstdge.png: [testng] 07:26:37,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:26:37,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:26:37,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-11_07-26-37.log] [testng] 07:26:37,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11a04798 - End of configuration. [testng] [2024-10-11 07:26:37,874] [pool-1-thread-10] Initializing /data/samples/william_wong01.png: [testng] 07:26:37,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:26:37,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:26:37,875 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-11_07-26-37.log] [testng] 07:26:37,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51b4dc2c - End of configuration. [testng] [2024-10-11 07:26:37,893] [pool-1-thread-9] Initializing /data/samples/william_wong05.png: [testng] 07:26:37,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:26:37,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:26:37,894 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-11_07-26-37.log] [testng] 07:26:37,895 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69c2f5d1 - End of configuration. [testng] [2024-10-11 07:26:37,918] [pool-1-thread-8] Initializing /data/qa-7473/n.tif: [testng] 07:26:37,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:26:37,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:26:37,919 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-11_07-26-37.log] [testng] 07:26:37,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17ede5f8 - End of configuration. [testng] [2024-10-11 07:26:38,390] [pool-1-thread-7] Initializing /data/samples/monkey_apng.png: [testng] 07:26:38,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:26:38,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:26:38,391 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-11_07-26-38.log] [testng] 07:26:38,392 |-INFO in ch.qos.logback.core.sift.SiftProcessor@de2ffe - End of configuration. [testng] [2024-10-11 07:26:38,416] [pool-1-thread-6] Initializing /data/samples/phug_logo.png: [testng] 07:26:38,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:26:38,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:26:38,417 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-11_07-26-38.log] [testng] 07:26:38,418 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dc86abe - End of configuration. [testng] [2024-10-11 07:26:38,431] [pool-1-thread-5] Initializing /data/samples/spinfox.png: [testng] 07:26:38,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:26:38,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:26:38,432 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-11_07-26-38.log] [testng] 07:26:38,432 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42ab0c96 - End of configuration. [testng] [2024-10-11 07:26:38,459] [pool-1-thread-4] Initializing /data/samples/MoonPhases.png: [testng] 07:26:38,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:26:38,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:26:38,460 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-11_07-26-38.log] [testng] 07:26:38,461 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aa9fcbe - End of configuration. [testng] [2024-10-11 07:26:38,479] [pool-1-thread-3] Initializing /data/samples/orbit.png: [testng] 07:26:38,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:26:38,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:26:38,480 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-11_07-26-38.log] [testng] 07:26:38,480 |-INFO in ch.qos.logback.core.sift.SiftProcessor@652c9f5 - End of configuration. [testng] [2024-10-11 07:26:38,499] [pool-1-thread-2] Initializing /data/samples/joanna_viera01.png: [testng] 07:26:38,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:26:38,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:26:38,500 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-11_07-26-38.log] [testng] 07:26:38,501 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1980ed5 - End of configuration. [testng] [2024-10-11 07:26:40,549] [pool-1-thread-2] Initializing /data/qa-7473/x.png: [testng] [2024-10-11 07:26:40,562] [pool-1-thread-1] Initializing /data/samples/PhugAnimation3.png: [testng] [2024-10-11 07:26:40,594] [pool-1-thread-4] Initializing /data/samples/StarV838.png: [testng] [2024-10-11 07:26:40,612] [pool-1-thread-6] Initializing /data/samples/chompy2.png: [testng] [2024-10-11 07:26:40,633] [pool-1-thread-12] Initializing /data/samples/william_wong02.png: [testng] [2024-10-11 07:26:40,651] [pool-1-thread-3] Initializing /data/samples/daniel_coltri_one.png: [testng] [2024-10-11 07:26:40,665] [pool-1-thread-5] Initializing /data/samples/william_wong04.png: [testng] [2024-10-11 07:26:40,675] [pool-1-thread-10] Initializing /data/samples/Sun.png: [testng] [2024-10-11 07:26:40,692] [pool-1-thread-7] Initializing /data/samples/Matrix.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 seconds Finished: SUCCESS