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Started by upstream project "BIOFORMATS-test-repo" build number 217 originally caused by: Started by upstream project "Trigger" build number 244 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins5083673055924837987.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34496_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 07:27:45,301 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 07:27:45,303 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 07:27:45,303 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:27:45,304 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:27:45,304 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:27:45,304 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:27:45,304 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:27:45,304 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:27:45,305 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:27:45,305 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:27:45,305 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:27:45,305 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:27:45,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:27:45,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:27:45,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:27:45,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:27:45,566 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:27:45,566 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:27:45,566 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:27:45,567 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:27:45,567 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 07:27:45,567 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 07:27:45,568 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 263 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-11 07:27:45,577] [main] java.version = 1.8.0_342 [testng] 07:27:45,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:27:45,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:27:45,626 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-11_07-27-45.log] [testng] 07:27:45,628 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-11 07:27:45,630] [main] testng.directory = /data [testng] [2024-10-11 07:27:45,630] [main] testng.configDirectory = /config [testng] [2024-10-11 07:27:45,642] [main] testng.multiplier = 1.0 [testng] [2024-10-11 07:27:45,642] [main] testng.in-memory = false [testng] [2024-10-11 07:27:45,642] [main] testng.allow-missing = false [testng] [2024-10-11 07:27:45,642] [main] user.language = en [testng] [2024-10-11 07:27:45,642] [main] user.country = ${user.country} [testng] [2024-10-11 07:27:45,642] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-11 07:29:56,784] [main] ---------------------------------------- [testng] [2024-10-11 07:29:56,784] [main] Total files: 15735 [testng] [2024-10-11 07:29:56,784] [main] Scan time: 131.142 s (8 ms/file) [testng] [2024-10-11 07:29:56,784] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-11 07:32:44,340] [pool-1-thread-1] Initializing /data/converted/converted/mri-stack.tif: [testng] 07:32:44,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:32:44,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:32:44,341 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-11_07-32-44.log] [testng] 07:32:44,342 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50868994 - End of configuration. [testng] [2024-10-11 07:32:45,780] [pool-1-thread-12] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] 07:32:45,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:32:45,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:32:45,781 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-11_07-32-45.log] [testng] 07:32:45,782 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71c75587 - End of configuration. [testng] [2024-10-11 07:32:47,302] [pool-1-thread-11] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] 07:32:47,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:32:47,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:32:47,303 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-11_07-32-47.log] [testng] 07:32:47,303 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63385532 - End of configuration. [testng] [2024-10-11 07:32:48,279] [pool-1-thread-10] Initializing /data/converted/kelsey/432x342BW.tif: [testng] 07:32:48,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:32:48,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:32:48,280 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-11_07-32-48.log] [testng] 07:32:48,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b02a5c2 - End of configuration. [testng] [2024-10-11 07:32:49,247] [pool-1-thread-9] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] 07:32:49,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:32:49,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:32:49,248 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-11_07-32-49.log] [testng] 07:32:49,248 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49351f3d - End of configuration. [testng] [2024-10-11 07:32:50,739] [pool-1-thread-8] Initializing /data/converted/converted/2chz.tif: [testng] 07:32:50,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:32:50,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:32:50,739 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-11_07-32-50.log] [testng] 07:32:50,740 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43ca5cac - End of configuration. [testng] [2024-10-11 07:32:51,918] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] 07:32:51,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:32:51,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:32:51,919 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-11_07-32-51.log] [testng] 07:32:51,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f365c52 - End of configuration. [testng] [2024-10-11 07:32:53,361] [pool-1-thread-6] Initializing /data/converted/dietmar/138.tif: [testng] 07:32:53,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:32:53,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:32:53,361 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-11_07-32-53.log] [testng] 07:32:53,362 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25b15e10 - End of configuration. [testng] [2024-10-11 07:32:54,553] [pool-1-thread-5] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] 07:32:54,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:32:54,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:32:54,554 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-11_07-32-54.log] [testng] 07:32:54,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a0926e6 - End of configuration. [testng] [2024-10-11 07:32:56,724] [pool-1-thread-4] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] 07:32:56,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:32:56,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:32:56,725 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-11_07-32-56.log] [testng] 07:32:56,725 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f1986aa - End of configuration. [testng] [2024-10-11 07:32:58,242] [pool-1-thread-3] Initializing /data/converted/kelsey/650x514BW.tif: [testng] 07:32:58,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:32:58,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:32:58,242 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-11_07-32-58.log] [testng] 07:32:58,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5395d14b - End of configuration. [testng] [2024-10-11 07:32:59,251] [pool-1-thread-2] Initializing /data/converted/converted/damian.tif: [testng] 07:32:59,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:32:59,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:32:59,252 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-11_07-32-59.log] [testng] 07:32:59,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61a0f2d3 - End of configuration. [testng] [2024-10-11 07:33:21,034] [pool-1-thread-2] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-10-11 07:33:22,335] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-10-11 07:33:23,562] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] [2024-10-11 07:33:25,194] [pool-1-thread-3] Initializing /data/scott/Slide133-04.tif: [testng] [2024-10-11 07:33:48,624] [pool-1-thread-2] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-10-11 07:33:54,595] [pool-1-thread-3] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-10-11 07:34:13,284] [pool-1-thread-12] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-10-11 07:34:36,176] [pool-1-thread-2] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-10-11 07:34:41,766] [pool-1-thread-3] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-10-11 07:37:10,478] [pool-1-thread-8] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-10-11 07:37:55,528] [pool-1-thread-11] Initializing /data/scott/Slide133-11.tif: [testng] [2024-10-11 07:38:03,696] [pool-1-thread-4] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-10-11 07:38:06,246] [pool-1-thread-8] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-10-11 07:38:40,199] [pool-1-thread-11] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-10-11 07:38:55,133] [pool-1-thread-4] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-10-11 07:39:21,670] [pool-1-thread-11] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-10-11 07:39:27,172] [pool-1-thread-8] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-10-11 07:39:48,800] [pool-1-thread-1] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-10-11 07:40:04,595] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-10-11 07:42:15,308] [pool-1-thread-9] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-10-11 07:42:56,131] [pool-1-thread-9] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-10-11 07:43:13,244] [pool-1-thread-7] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-10-11 07:43:42,819] [pool-1-thread-9] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-10-11 07:44:03,169] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-10-11 07:44:09,287] [pool-1-thread-6] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-10-11 07:45:28,304] [pool-1-thread-10] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-10-11 07:47:33,381] [pool-1-thread-4] Initializing /data/othmar/mozaic.tif: [testng] [2024-10-11 07:49:15,162] [pool-1-thread-9] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-10-11 07:50:48,467] [pool-1-thread-3] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-10-11 07:51:12,062] [pool-1-thread-11] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-10-11 07:52:43,633] [pool-1-thread-4] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-10-11 07:53:13,819] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-10-11 07:53:27,872] [pool-1-thread-4] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-10-11 07:53:57,987] [pool-1-thread-4] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-10-11 07:54:58,178] [pool-1-thread-7] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-10-11 07:55:56,452] [pool-1-thread-11] Initializing /data/scott/Slide133-01.tif: [testng] [2024-10-11 07:56:27,232] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-10-11 07:56:31,801] [pool-1-thread-6] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-10-11 07:56:34,452] [pool-1-thread-11] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-10-11 07:57:06,732] [pool-1-thread-6] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] [2024-10-11 08:02:00,437] [pool-1-thread-6] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-10-11 08:02:39,326] [pool-1-thread-6] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-10-11 08:05:42,887] [pool-1-thread-7] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-10-11 08:06:04,254] [pool-1-thread-5] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-10-11 08:06:33,658] [pool-1-thread-10] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-10-11 08:06:47,639] [pool-1-thread-8] Initializing /data/converted/dietmar/137.tif: [testng] [2024-10-11 08:07:03,255] [pool-1-thread-5] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-10-11 08:07:14,864] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-10-11 08:10:14,633] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-10-11 08:14:27,125] [pool-1-thread-7] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] [2024-10-11 08:15:02,059] [pool-1-thread-9] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-10-11 08:16:05,594] [pool-1-thread-4] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-10-11 08:17:10,276] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] [2024-10-11 08:17:39,526] [pool-1-thread-10] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-10-11 08:18:32,724] [pool-1-thread-9] Initializing /data/converted/sebastien/test.tif: [testng] [2024-10-11 08:20:20,787] [pool-1-thread-3] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-10-11 08:21:34,437] [pool-1-thread-2] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-10-11 08:21:36,981] [pool-1-thread-10] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-10-11 08:22:52,994] [pool-1-thread-3] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-10-11 08:24:24,266] [pool-1-thread-10] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-10-11 08:27:07,359] [pool-1-thread-8] Initializing /data/converted/michel/c.tif: [testng] [2024-10-11 08:27:15,035] [pool-1-thread-1] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] [2024-10-11 08:27:57,190] [pool-1-thread-8] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-10-11 08:28:34,709] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-10-11 08:28:37,273] [pool-1-thread-8] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-10-11 08:28:44,566] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-10-11 08:29:23,049] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-10-11 08:29:45,067] [pool-1-thread-9] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-10-11 08:30:42,397] [pool-1-thread-2] Initializing /data/converted/michel/e.tif: [testng] [2024-10-11 08:30:44,736] [pool-1-thread-9] Initializing /data/converted/nicolas/image.tif: [testng] [2024-10-11 08:31:17,747] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-10-11 08:32:03,686] [pool-1-thread-2] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-10-11 08:32:55,165] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-10-11 08:32:57,904] [pool-1-thread-3] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-10-11 08:35:59,365] [pool-1-thread-3] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-10-11 08:36:34,610] [pool-1-thread-3] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-10-11 08:37:31,210] [pool-1-thread-10] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-10-11 08:37:46,693] [pool-1-thread-6] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-10-11 08:37:49,086] [pool-1-thread-3] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-10-11 08:38:13,519] [pool-1-thread-10] Initializing /data/converted/michel/a.tif: [testng] [2024-10-11 08:38:29,204] [pool-1-thread-4] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-10-11 08:38:49,340] [pool-1-thread-10] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] [2024-10-11 08:38:52,303] [pool-1-thread-6] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-10-11 08:39:00,394] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-10-11 08:39:22,645] [pool-1-thread-7] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-10-11 08:39:25,660] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] [2024-10-11 08:39:31,799] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-10-11 08:39:59,527] [pool-1-thread-8] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-10-11 08:40:14,716] [pool-1-thread-7] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-10-11 08:40:55,915] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-10-11 08:41:01,420] [pool-1-thread-9] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-10-11 08:41:26,461] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-10-11 08:42:26,525] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-10-11 08:43:38,514] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-10-11 08:47:31,771] [pool-1-thread-9] Initializing /data/converted/michel/b.tif: [testng] [2024-10-11 08:47:41,457] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-10-11 08:48:12,168] [pool-1-thread-9] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] 08:48:21,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:48:21,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:48:21,408 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-11_08-48-21.log] [testng] 08:48:21,409 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54e12974 - End of configuration. [testng] [2024-10-11 08:48:32,783] [pool-1-thread-6] Initializing /data/converted/michel/d.tif: [testng] [2024-10-11 08:48:43,720] [pool-1-thread-3] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-10-11 08:48:59,729] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-10-11 08:49:07,018] [pool-1-thread-6] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-10-11 08:49:14,161] [pool-1-thread-3] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-10-11 08:49:24,091] [pool-1-thread-3] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-10-11 08:49:42,549] [pool-1-thread-5] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-10-11 08:49:52,272] [pool-1-thread-7] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-10-11 08:49:58,247] [pool-1-thread-6] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-10-11 08:50:03,882] [pool-1-thread-8] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-10-11 08:50:26,098] [pool-1-thread-1] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-10-11 08:50:31,579] [pool-1-thread-10] Initializing /data/scott/Slide133-08.tif: [testng] [2024-10-11 08:50:54,674] [pool-1-thread-1] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-10-11 08:51:04,438] [pool-1-thread-10] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] [2024-10-11 08:51:37,502] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-10-11 08:51:43,118] [pool-1-thread-5] Initializing /data/converted/lior/live+cf5b.tif: [testng] 09:31:33,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:31:33,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:31:33,532 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-11_09-31-33.log] [testng] 09:31:33,532 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f74fa9b - End of configuration. [testng] 09:34:37,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:34:37,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:34:37,646 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-11_09-34-37.log] [testng] 09:34:37,646 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79059313 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 126 minutes 58 seconds Finished: SUCCESS