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Started by upstream project "BIOFORMATS-test-repo" build number 217 originally caused by: Started by upstream project "Trigger" build number 244 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins2814963668378531469.sh + '[' cellr = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34517_merge_ci -v /uod/idr/repos/curated/cellr:/data -v /uod/idr-scratch/merge-ci/curated/cellr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 08:45:38,082 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:45:38,083 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 08:45:38,083 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:45:38,084 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:45:38,085 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:45:38,085 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:45:38,085 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:45:38,085 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:45:38,085 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:45:38,086 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:45:38,086 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:45:38,086 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:45:38,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:45:38,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:45:38,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:45:38,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:45:38,328 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:45:38,328 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:45:38,328 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:45:38,329 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:45:38,329 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 08:45:38,330 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 08:45:38,330 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 245 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-11 08:45:38,339] [main] java.version = 1.8.0_342 [testng] 08:45:38,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:45:38,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:45:38,384 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-11_08-45-38.log] [testng] 08:45:38,386 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-11 08:45:38,388] [main] testng.directory = /data [testng] [2024-10-11 08:45:38,388] [main] testng.configDirectory = /config [testng] [2024-10-11 08:45:38,399] [main] testng.multiplier = 1.0 [testng] [2024-10-11 08:45:38,399] [main] testng.in-memory = false [testng] [2024-10-11 08:45:38,399] [main] testng.allow-missing = false [testng] [2024-10-11 08:45:38,399] [main] user.language = en [testng] [2024-10-11 08:45:38,400] [main] user.country = ${user.country} [testng] [2024-10-11 08:45:38,400] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-11 08:47:34,012] [main] ---------------------------------------- [testng] [2024-10-11 08:47:34,012] [main] Total files: 256 [testng] [2024-10-11 08:47:34,012] [main] Scan time: 115.612 s (451 ms/file) [testng] [2024-10-11 08:47:34,012] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-11 08:52:41,349] [pool-1-thread-1] Initializing /data/viktorie/090902/090902_d.mtb: [testng] 08:52:41,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:52:41,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:52:41,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-11_08-52-41.log] [testng] 08:52:41,351 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d8c6503 - End of configuration. [testng] [2024-10-11 08:52:42,120] [pool-1-thread-12] Initializing /data/viktorie/2Channels.tif: [testng] 08:52:42,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:52:42,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:52:42,121 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-11_08-52-42.log] [testng] 08:52:42,121 |-INFO in ch.qos.logback.core.sift.SiftProcessor@154075d7 - End of configuration. [testng] [2024-10-11 08:52:43,791] [pool-1-thread-11] Initializing /data/colin/08-10-09/08-10-09_d.mtb: [testng] 08:52:43,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:52:43,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:52:43,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-11_08-52-43.log] [testng] 08:52:43,794 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64c4f925 - End of configuration. [testng] [2024-10-11 08:52:48,930] [pool-1-thread-10] Initializing /data/viktorie/Structure.jpg: [testng] 08:52:48,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:52:48,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:52:48,931 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-11_08-52-48.log] [testng] 08:52:48,932 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f210a68 - End of configuration. [testng] [2024-10-11 08:52:49,100] [pool-1-thread-9] Initializing /data/qa-6659/12-07-05/12-07-05_d.mtb: [testng] 08:52:49,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:52:49,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:52:49,100 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-11_08-52-49.log] [testng] 08:52:49,101 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f379504 - End of configuration. [testng] [2024-10-11 08:52:51,878] [pool-1-thread-8] Initializing /data/clare/set_27_on_d.mtb: [testng] 08:52:51,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:52:51,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:52:51,880 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-11_08-52-51.log] [testng] 08:52:51,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2039c531 - End of configuration. [testng] [2024-10-11 08:52:53,061] [pool-1-thread-7] Initializing /data/qa-17107/plain/Plain_d.mtb: [testng] 08:52:53,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:52:53,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:52:53,062 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-11_08-52-53.log] [testng] 08:52:53,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f50c2ce - End of configuration. [testng] [2024-10-11 08:52:53,920] [pool-1-thread-6] Initializing /data/qa-17107/LifeScienceDemo/LifeScienceDemoSTAR_d.mtb: [testng] 08:52:53,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:52:53,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:52:53,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-11_08-52-53.log] [testng] 08:52:53,922 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6029c764 - End of configuration. [testng] [2024-10-11 08:52:54,627] [pool-1-thread-5] Initializing /data/qa-17107/example2/example2_d.mtb: [testng] 08:52:54,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:52:54,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:52:54,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-11_08-52-54.log] [testng] 08:52:54,628 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27f46b97 - End of configuration. [testng] [2024-10-11 08:52:55,474] [pool-1-thread-4] Initializing /data/qa-17107/MaterialsDemo/MaterialsDemo_d.mtb: [testng] 08:52:55,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:52:55,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:52:55,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-11_08-52-55.log] [testng] 08:52:55,475 |-INFO in ch.qos.logback.core.sift.SiftProcessor@738b120a - End of configuration. [testng] [2024-10-11 08:52:56,459] [pool-1-thread-3] Initializing /data/kees/Mariaelena_d.mtb: [testng] 08:52:56,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:52:56,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:52:56,460 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-11_08-52-56.log] [testng] 08:52:56,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d4a277f - End of configuration. [testng] [2024-10-11 08:52:58,481] [pool-1-thread-2] Initializing /data/colin/07-06-21/07-06-21_d.mtb: [testng] 08:52:58,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:52:58,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:52:58,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-11_08-52-58.log] [testng] 08:52:58,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5207424 - End of configuration. [testng] [2024-10-11 08:53:04,829] [pool-1-thread-10] Initializing /data/viktorie/test/test_d.mtb: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 minutes 31 seconds Finished: SUCCESS