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Started by upstream project "BIOFORMATS-test-repo" build number 217 originally caused by: Started by upstream project "Trigger" build number 244 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins15747623243877007767.sh + '[' ivision = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34522_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 08:55:09,658 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:55:09,660 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 08:55:09,660 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:55:09,661 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:55:09,661 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:55:09,661 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:55:09,662 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:55:09,662 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:55:09,662 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:55:09,662 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:55:09,663 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:55:09,663 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:55:09,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:55:09,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:55:09,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:55:09,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:55:09,913 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:55:09,913 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:55:09,913 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:55:09,914 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:55:09,914 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 08:55:09,915 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 08:55:09,915 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 253 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-11 08:55:09,924] [main] java.version = 1.8.0_342 [testng] 08:55:09,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:55:09,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:09,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-11_08-55-09.log] [testng] 08:55:09,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-11 08:55:09,974] [main] testng.directory = /data [testng] [2024-10-11 08:55:09,974] [main] testng.configDirectory = /config [testng] [2024-10-11 08:55:09,985] [main] testng.multiplier = 1.0 [testng] [2024-10-11 08:55:09,986] [main] testng.in-memory = false [testng] [2024-10-11 08:55:09,986] [main] testng.allow-missing = false [testng] [2024-10-11 08:55:09,986] [main] user.language = en [testng] [2024-10-11 08:55:09,986] [main] user.country = ${user.country} [testng] [2024-10-11 08:55:09,986] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-11 08:55:14,158] [main] ---------------------------------------- [testng] [2024-10-11 08:55:14,158] [main] Total files: 17 [testng] [2024-10-11 08:55:14,159] [main] Scan time: 4.172 s (245 ms/file) [testng] [2024-10-11 08:55:14,159] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 17 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-11 08:55:18,124] [pool-1-thread-1] Initializing /data/christopher/Color48 Copy.ipm: [testng] 08:55:18,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:55:18,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:18,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-11_08-55-18.log] [testng] 08:55:18,126 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29fb346a - End of configuration. [testng] [2024-10-11 08:55:18,338] [pool-1-thread-12] Initializing /data/samples/16bit 320x256x1.ipm: [testng] 08:55:18,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:55:18,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:18,339 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-11_08-55-18.log] [testng] 08:55:18,339 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69c2f5d1 - End of configuration. [testng] [2024-10-11 08:55:18,558] [pool-1-thread-11] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: [testng] 08:55:18,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:55:18,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:18,559 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-11_08-55-18.log] [testng] 08:55:18,560 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52ef61c1 - End of configuration. [testng] [2024-10-11 08:55:18,761] [pool-1-thread-10] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: [testng] 08:55:18,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:55:18,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:18,762 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-11_08-55-18.log] [testng] 08:55:18,762 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ffd3a09 - End of configuration. [testng] [2024-10-11 08:55:18,934] [pool-1-thread-9] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: [testng] 08:55:18,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:55:18,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:18,935 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-11_08-55-18.log] [testng] 08:55:18,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@114419f6 - End of configuration. [testng] [2024-10-11 08:55:19,131] [pool-1-thread-8] Initializing /data/samples/48bit 150x100x3.ipm: [testng] 08:55:19,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:55:19,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:19,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-11_08-55-19.log] [testng] 08:55:19,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e3e22d2 - End of configuration. [testng] [2024-10-11 08:55:19,312] [pool-1-thread-7] Initializing /data/samples/24bit 300x200x3.ipm: [testng] 08:55:19,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:55:19,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:19,313 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-11_08-55-19.log] [testng] 08:55:19,313 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14fb8cac - End of configuration. [testng] [2024-10-11 08:55:19,496] [pool-1-thread-6] Initializing /data/samples/16-bit 320x256x3.ipm: [testng] 08:55:19,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:55:19,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:19,497 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-11_08-55-19.log] [testng] 08:55:19,497 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38ffb7e7 - End of configuration. [testng] [2024-10-11 08:55:19,674] [pool-1-thread-5] Initializing /data/nigel/CD48_75_24hrColor.ipm: [testng] 08:55:19,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:55:19,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:19,675 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-11_08-55-19.log] [testng] 08:55:19,676 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3312989c - End of configuration. [testng] [2024-10-11 08:55:19,840] [pool-1-thread-4] Initializing /data/jcb/200810162/wt BA plus bio.ipm: [testng] 08:55:19,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:55:19,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:19,841 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-11_08-55-19.log] [testng] 08:55:19,841 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3684889 - End of configuration. [testng] [2024-10-11 08:55:20,017] [pool-1-thread-3] Initializing /data/samples/08Bit 320x256x1.ipm: [testng] 08:55:20,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:55:20,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:20,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-11_08-55-20.log] [testng] 08:55:20,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ff9a1ac - End of configuration. [testng] [2024-10-11 08:55:20,196] [pool-1-thread-2] Initializing /data/samples/08Bit 320x256xthree.ipm: [testng] 08:55:20,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:55:20,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:20,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-11_08-55-20.log] [testng] 08:55:20,198 |-INFO in ch.qos.logback.core.sift.SiftProcessor@715fd203 - End of configuration. [testng] [2024-10-11 08:55:24,078] [pool-1-thread-12] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: [testng] [2024-10-11 08:55:24,254] [pool-1-thread-3] Initializing /data/jcb/200810162/wt ba no bio.ipm: [testng] [2024-10-11 08:55:24,432] [pool-1-thread-7] Initializing /data/jcb/200810162/mutBA plus bio.ipm: [testng] [2024-10-11 08:55:24,607] [pool-1-thread-5] Initializing /data/jcb/200810162/mut BA no bio.ipm: [testng] [2024-10-11 08:55:24,789] [pool-1-thread-11] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 901, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 20 seconds Finished: SUCCESS