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Started by upstream project "BIOFORMATS-test-repo" build number 217 originally caused by: Started by upstream project "Trigger" build number 244 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins15224397013790511826.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34525_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 09:03:49,655 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 09:03:49,657 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 09:03:49,657 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:03:49,658 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:03:49,658 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 09:03:49,658 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 09:03:49,659 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 09:03:49,659 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:03:49,659 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:03:49,659 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 09:03:49,659 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 09:03:49,659 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 09:03:49,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:03:49,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:03:49,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:03:49,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:03:49,925 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:03:49,926 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:03:49,926 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:03:49,926 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:03:49,926 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 09:03:49,927 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 09:03:49,927 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 268 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-11 09:03:49,937] [main] java.version = 1.8.0_342 [testng] 09:03:49,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:03:49,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:03:49,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-11_09-03-49.log] [testng] 09:03:49,987 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-11 09:03:49,989] [main] testng.directory = /data [testng] [2024-10-11 09:03:49,989] [main] testng.configDirectory = /config [testng] [2024-10-11 09:03:50,001] [main] testng.multiplier = 1.0 [testng] [2024-10-11 09:03:50,001] [main] testng.in-memory = false [testng] [2024-10-11 09:03:50,001] [main] testng.allow-missing = false [testng] [2024-10-11 09:03:50,001] [main] user.language = en [testng] [2024-10-11 09:03:50,001] [main] user.country = ${user.country} [testng] [2024-10-11 09:03:50,001] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-11 09:03:56,140] [main] ---------------------------------------- [testng] [2024-10-11 09:03:56,140] [main] Total files: 22 [testng] [2024-10-11 09:03:56,140] [main] Scan time: 6.138 s (279 ms/file) [testng] [2024-10-11 09:03:56,140] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-11 09:04:15,814] [pool-1-thread-1] Initializing /data/converted/NESb_C2_TP7.seq: [testng] 09:04:15,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:04:15,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:04:15,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-11_09-04-15.log] [testng] 09:04:15,815 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f61e0bf - End of configuration. [testng] [2024-10-11 09:04:16,284] [pool-1-thread-12] Initializing /data/converted/clown8c.tif: [testng] 09:04:16,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:04:16,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:04:16,285 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-11_09-04-16.log] [testng] 09:04:16,285 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21053a6f - End of configuration. [testng] [2024-10-11 09:04:17,242] [pool-1-thread-11] Initializing /data/samples/TISSUE.TIF: [testng] 09:04:17,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:04:17,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:04:17,244 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-11_09-04-17.log] [testng] 09:04:17,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d9b10d8 - End of configuration. [testng] [2024-10-11 09:04:18,207] [pool-1-thread-10] Initializing /data/converted/dub01.seq: [testng] 09:04:18,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:04:18,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:04:18,208 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-11_09-04-18.log] [testng] 09:04:18,209 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38df8878 - End of configuration. [testng] [2024-10-11 09:04:18,617] [pool-1-thread-9] Initializing /data/xiuwen/head2.seq: [testng] 09:04:18,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:04:18,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:04:18,618 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-11_09-04-18.log] [testng] 09:04:18,619 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10d031a8 - End of configuration. [testng] [2024-10-11 09:04:19,088] [pool-1-thread-8] Initializing /data/samples/PROBE.TIF: [testng] 09:04:19,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:04:19,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:04:19,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-11_09-04-19.log] [testng] 09:04:19,089 |-INFO in ch.qos.logback.core.sift.SiftProcessor@636932b8 - End of configuration. [testng] [2024-10-11 09:04:19,569] [pool-1-thread-7] Initializing /data/converted/clown.ipw: [testng] 09:04:19,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:04:19,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:04:19,570 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-11_09-04-19.log] [testng] 09:04:19,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b66d06f - End of configuration. [testng] [2024-10-11 09:04:19,982] [pool-1-thread-6] Initializing /data/samples/HEART.SEQ: [testng] 09:04:19,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:04:19,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:04:19,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-11_09-04-19.log] [testng] 09:04:19,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53f77d93 - End of configuration. [testng] [2024-10-11 09:04:20,371] [pool-1-thread-5] Initializing /data/converted/mitosis-test.seq: [testng] 09:04:20,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:04:20,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:04:20,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-11_09-04-20.log] [testng] 09:04:20,372 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ccb2476 - End of configuration. [testng] [2024-10-11 09:04:20,809] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 09:04:20,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:04:20,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:04:20,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-11_09-04-20.log] [testng] 09:04:20,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b00ce18 - End of configuration. [testng] [2024-10-11 09:04:21,223] [pool-1-thread-3] Initializing /data/converted/mitosis-test.tif: [testng] 09:04:21,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:04:21,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:04:21,224 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-11_09-04-21.log] [testng] 09:04:21,224 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e62f409 - End of configuration. [testng] [2024-10-11 09:04:22,414] [pool-1-thread-2] Initializing /data/converted/clown.tif: [testng] 09:04:22,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:04:22,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:04:22,415 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-11_09-04-22.log] [testng] 09:04:22,415 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dee9026 - End of configuration. [testng] [2024-10-11 09:04:29,238] [pool-1-thread-7] Initializing /data/converted/clown.seq: [testng] [2024-10-11 09:04:29,786] [pool-1-thread-2] Initializing /data/converted/clown8c.seq: [testng] [2024-10-11 09:04:30,335] [pool-1-thread-5] Initializing /data/converted/dub01.ipw: [testng] [2024-10-11 09:04:30,856] [pool-1-thread-8] Initializing /data/alex/AFAset0003.ips: [testng] [2024-10-11 09:04:31,345] [pool-1-thread-6] Initializing /data/converted/dub01.pic: [testng] [2024-10-11 09:04:31,796] [pool-1-thread-10] Initializing /data/converted/clown8c.ipw: [testng] [2024-10-11 09:04:32,268] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] [2024-10-11 09:04:33,254] [pool-1-thread-1] Initializing /data/converted/mitosis-test.ipw: [testng] [2024-10-11 09:04:34,281] [pool-1-thread-9] Initializing /data/samples/FLDUAL.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 3 minutes 15 seconds Finished: SUCCESS