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Started by upstream project "BIOFORMATS-test-repo" build number 218 originally caused by: Started by upstream project "Trigger" build number 245 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins4310903925218771757.sh + '[' targa = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34570_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:03:01,324 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:03:01,326 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 02:03:01,326 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:03:01,327 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:03:01,327 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:03:01,328 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:03:01,328 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:03:01,328 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:03:01,329 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:03:01,330 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:03:01,330 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:03:01,331 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:03:01,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:03:01,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:03:01,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:03:01,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:03:01,538 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:03:01,538 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:03:01,538 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:03:01,538 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:03:01,538 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 02:03:01,539 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 02:03:01,539 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 210 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-12 02:03:01,548] [main] java.version = 11.0.16 [testng] 02:03:01,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:03:01,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:01,596 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-12_02-03-01.log] [testng] 02:03:01,598 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-10-12 02:03:01,601] [main] testng.directory = /data [testng] [2024-10-12 02:03:01,601] [main] testng.configDirectory = /config [testng] [2024-10-12 02:03:01,611] [main] testng.multiplier = 1.0 [testng] [2024-10-12 02:03:01,612] [main] testng.in-memory = false [testng] [2024-10-12 02:03:01,612] [main] testng.allow-missing = false [testng] [2024-10-12 02:03:01,612] [main] user.language = en [testng] [2024-10-12 02:03:01,613] [main] user.country = ${user.country} [testng] [2024-10-12 02:03:01,613] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-12 02:03:03,827] [main] ---------------------------------------- [testng] [2024-10-12 02:03:03,827] [main] Total files: 21 [testng] [2024-10-12 02:03:03,827] [main] Scan time: 2.214 s (105 ms/file) [testng] [2024-10-12 02:03:03,828] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-12 02:03:15,449] [pool-1-thread-1] Initializing /data/samples/XING_T24.TGA: [testng] 02:03:15,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:03:15,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:15,452 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-12_02-03-15.log] [testng] 02:03:15,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57ca4d96 - End of configuration. [testng] [2024-10-12 02:03:15,747] [pool-1-thread-12] Initializing /data/samples/FLAG_B24.TGA: [testng] 02:03:15,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:03:15,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:15,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-12_02-03-15.log] [testng] 02:03:15,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d90c5df - End of configuration. [testng] [2024-10-12 02:03:16,141] [pool-1-thread-11] Initializing /data/samples/MARBLES.TGA: [testng] 02:03:16,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:03:16,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:16,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-12_02-03-16.log] [testng] 02:03:16,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@504ca982 - End of configuration. [testng] [2024-10-12 02:03:16,688] [pool-1-thread-10] Initializing /data/samples/FLAG_T16.TGA: [testng] 02:03:16,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:03:16,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:16,689 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-12_02-03-16.log] [testng] 02:03:16,690 |-INFO in ch.qos.logback.core.sift.SiftProcessor@434888f3 - End of configuration. [testng] [2024-10-12 02:03:17,201] [pool-1-thread-9] Initializing /data/samples/UTC32.TGA: [testng] 02:03:17,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:03:17,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:17,202 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-12_02-03-17.log] [testng] 02:03:17,202 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1159b04 - End of configuration. [testng] [2024-10-12 02:03:17,397] [pool-1-thread-8] Initializing /data/samples/CCM8.TGA: [testng] 02:03:17,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:03:17,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:17,398 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-12_02-03-17.log] [testng] 02:03:17,398 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4905d351 - End of configuration. [testng] [2024-10-12 02:03:17,741] [pool-1-thread-7] Initializing /data/samples/UBW8.TGA: [testng] 02:03:17,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:03:17,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:17,742 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-12_02-03-17.log] [testng] 02:03:17,743 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a57d484 - End of configuration. [testng] [2024-10-12 02:03:18,201] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA: [testng] 02:03:18,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:03:18,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:18,202 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-12_02-03-18.log] [testng] 02:03:18,203 |-INFO in ch.qos.logback.core.sift.SiftProcessor@534c54d - End of configuration. [testng] [2024-10-12 02:03:18,577] [pool-1-thread-5] Initializing /data/samples/XING_B24.TGA: [testng] 02:03:18,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:03:18,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:18,578 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-12_02-03-18.log] [testng] 02:03:18,579 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5086bc88 - End of configuration. [testng] [2024-10-12 02:03:18,785] [pool-1-thread-4] Initializing /data/samples/FLAG_B16.TGA: [testng] 02:03:18,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:03:18,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:18,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-12_02-03-18.log] [testng] 02:03:18,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25af6311 - End of configuration. [testng] [2024-10-12 02:03:18,963] [pool-1-thread-3] Initializing /data/samples/CTC24.TGA: [testng] 02:03:18,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:03:18,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:18,964 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-12_02-03-18.log] [testng] 02:03:18,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50302d11 - End of configuration. [testng] [2024-10-12 02:03:19,468] [pool-1-thread-2] Initializing /data/samples/FLAG_B32.TGA: [testng] 02:03:19,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:03:19,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:19,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-12_02-03-19.log] [testng] 02:03:19,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ad9b20d - End of configuration. [testng] [2024-10-12 02:03:23,622] [pool-1-thread-8] Initializing /data/samples/UTC16.TGA: [testng] [2024-10-12 02:03:23,929] [pool-1-thread-7] Initializing /data/samples/XING_T32.TGA: [testng] [2024-10-12 02:03:24,566] [pool-1-thread-3] Initializing /data/samples/XING_B32.TGA: [testng] [2024-10-12 02:03:24,885] [pool-1-thread-5] Initializing /data/samples/FLAG_T32.TGA: [testng] [2024-10-12 02:03:25,081] [pool-1-thread-9] Initializing /data/samples/UCM8.TGA: [testng] [2024-10-12 02:03:25,355] [pool-1-thread-4] Initializing /data/samples/CBW8.TGA: [testng] [2024-10-12 02:03:25,903] [pool-1-thread-1] Initializing /data/samples/XING_T16.TGA: [testng] [2024-10-12 02:03:26,085] [pool-1-thread-10] Initializing /data/samples/XING_B16.TGA: [testng] [2024-10-12 02:03:26,598] [pool-1-thread-2] Initializing /data/samples/UTC24.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 32 seconds Finished: SUCCESS