Skip to content

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 218
originally caused by:
 Started by upstream project "Trigger" build number 245
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10
[BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins5753741458617826227.sh
+ '[' micromanager = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34620_merge_ci -v /uod/idr/repos/curated/micromanager:/data -v /uod/idr-scratch/merge-ci/curated/micromanager:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 05:05:48,462 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 05:05:48,463 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 05:05:48,463 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 05:05:48,464 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 05:05:48,465 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 05:05:48,465 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 05:05:48,466 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 05:05:48,466 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 05:05:48,466 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 05:05:48,467 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 05:05:48,467 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 05:05:48,467 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 05:05:48,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 05:05:48,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 05:05:48,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 05:05:48,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 05:05:48,663 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 05:05:48,663 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 05:05:48,663 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 05:05:48,664 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 05:05:48,664 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 05:05:48,665 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 05:05:48,665 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 199 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-12 05:05:48,673] [main] java.version = 11.0.16
   [testng] 05:05:48,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 05:05:48,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:05:48,718 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-12_05-05-48.log]
   [testng] 05:05:48,719 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2024-10-12 05:05:48,721] [main] testng.directory = /data
   [testng] [2024-10-12 05:05:48,721] [main] testng.configDirectory = /config
   [testng] [2024-10-12 05:05:48,731] [main] testng.multiplier = 1.0
   [testng] [2024-10-12 05:05:48,732] [main] testng.in-memory = false
   [testng] [2024-10-12 05:05:48,732] [main] testng.allow-missing = false
   [testng] [2024-10-12 05:05:48,732] [main] user.language = en
   [testng] [2024-10-12 05:05:48,732] [main] user.country = ${user.country}
   [testng] [2024-10-12 05:05:48,732] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-12 05:13:55,000] [main] ----------------------------------------
   [testng] [2024-10-12 05:13:55,001] [main] Total files: 1686
   [testng] [2024-10-12 05:13:55,001] [main] Scan time: 486.268 s (288 ms/file)
   [testng] [2024-10-12 05:13:55,001] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 49 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-12 05:33:54,320] [pool-1-thread-1] Initializing /data/pr-3253/img_000000000__000.tif: 
   [testng] 05:33:54,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 05:33:54,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:33:54,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-12_05-33-54.log]
   [testng] 05:33:54,324 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41471f3d - End of configuration.
   [testng] [2024-10-12 05:33:57,102] [pool-1-thread-12] Initializing /data/nico/test2/img_000000000_Cy5_000.tif: 
   [testng] 05:33:57,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 05:33:57,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:33:57,103 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-12_05-33-57.log]
   [testng] 05:33:57,104 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29ba2388 - End of configuration.
   [testng] [2024-10-12 05:34:00,710] [pool-1-thread-11] Initializing /data/nico/test-ASI-Z_181/img_000000004_FITC_009.tif: 
   [testng] 05:34:00,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 05:34:00,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:34:00,711 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-12_05-34-00.log]
   [testng] 05:34:00,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50e8023f - End of configuration.
   [testng] [2024-10-12 05:34:11,902] [pool-1-thread-11] Used files list does not include base file
   [testng] [2024-10-12 05:34:11,905] [pool-1-thread-10] Initializing /data/nico/MM_test_0/img_0_Cy5_0.tif: 
   [testng] 05:34:11,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 05:34:11,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:34:11,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-12_05-34-11.log]
   [testng] 05:34:11,906 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53907ffa - End of configuration.
   [testng] [2024-10-12 05:34:17,455] [pool-1-thread-9] Initializing /data/eik/1-Pos_000_000/img_000000000_Blue_002.tif: 
   [testng] 05:34:17,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 05:34:17,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:34:17,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-12_05-34-17.log]
   [testng] 05:34:17,456 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6dbf0bf - End of configuration.
   [testng] [2024-10-12 05:34:22,322] [pool-1-thread-8] Initializing /data/nico/test-ASI-Z_181/img_000000004_FITC_007.tif: 
   [testng] 05:34:22,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 05:34:22,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:34:22,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-12_05-34-22.log]
   [testng] 05:34:22,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f4e58a6 - End of configuration.
   [testng] [2024-10-12 05:34:31,006] [pool-1-thread-8] Used files list does not include base file
   [testng] [2024-10-12 05:34:31,009] [pool-1-thread-7] Initializing /data/nico/S2-GFP-Histone-Cherry-tub_9_Great2/metadata.txt: 
   [testng] 05:34:31,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 05:34:31,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:34:31,010 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-12_05-34-31.log]
   [testng] 05:34:31,010 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6af357bd - End of configuration.
   [testng] [2024-10-12 05:35:56,895] [pool-1-thread-6] Initializing /data/pr-3229/1.4-large-acq-take-2_1_MMStack_Pos0_metadata.txt: 
   [testng] 05:35:56,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 05:35:56,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:35:56,896 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-12_05-35-56.log]
   [testng] 05:35:56,897 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2418165d - End of configuration.
   [testng] [2024-10-12 05:38:16,870] [pool-1-thread-5] Initializing /data/public/1.4.16/serge/Pos0/img_000000000_00-BF0_000.tif: 
   [testng] 05:38:16,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 05:38:16,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:38:16,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-12_05-38-16.log]
   [testng] 05:38:16,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17d0a998 - End of configuration.
   [testng] [2024-10-12 05:38:22,327] [pool-1-thread-4] Initializing /data/kally/img_000000000_Brightfield_000.tif: 
   [testng] 05:38:22,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 05:38:22,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:38:22,328 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-12_05-38-22.log]
   [testng] 05:38:22,328 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19fe2aa7 - End of configuration.
   [testng] [2024-10-12 05:38:34,483] [pool-1-thread-3] Initializing /data/eric/GFP-Aladin mCh-Tub_2/Acqusition.xml: 
   [testng] 05:38:34,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 05:38:34,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:38:34,484 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-12_05-38-34.log]
   [testng] 05:38:34,485 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54d5de75 - End of configuration.
   [testng] [2024-10-12 05:38:41,615] [pool-1-thread-2] Initializing /data/david/trial 2 part 3 40x_0/Acqusition.xml: 
   [testng] 05:38:41,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 05:38:41,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:38:41,616 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-12_05-38-41.log]
   [testng] 05:38:41,616 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6394e625 - End of configuration.
   [testng] [2024-10-12 05:39:33,108] [pool-1-thread-1] Initializing /data/nico/Untitled_4_multi_file/img_000000000_gfpFast_000.tif: 
   [testng] [2024-10-12 05:40:50,622] [pool-1-thread-12] Initializing /data/david/res test/res test.tif: 
   [testng] [2024-10-12 05:41:23,218] [pool-1-thread-12] Initializing /data/nico/test-ASI-Z_181/img_000000004_Cy3_006.tif: 
   [testng] [2024-10-12 05:41:38,823] [pool-1-thread-12] Used files list does not include base file
   [testng] [2024-10-12 05:41:50,755] [pool-1-thread-2] Initializing /data/qa-17040/hyper2.0_1_MMStack_1-Pos_001_000_metadata.txt: 
   [testng] [2024-10-12 05:42:39,727] [pool-1-thread-2] Initializing /data/public/1.4.22/thomas/test/test_sep/Pos0/img_000000000_FITC_000.tif: 
   [testng] [2024-10-12 05:43:27,101] [pool-1-thread-10] Initializing /data/qa-17040/hyper2.0_1_MMStack_1-Pos_001_001_metadata.txt: 
   [testng] [2024-10-12 05:44:24,966] [pool-1-thread-10] Initializing /data/qa-17040/hyper2.0_1_MMStack_1-Pos_000_000_metadata.txt: 
   [testng] [2024-10-12 05:44:49,791] [pool-1-thread-9] Initializing /data/scott/EMoffchanfurst2Time_0/img_000000000_491_000.tif: 
   [testng] [2024-10-12 05:45:15,438] [pool-1-thread-2] Initializing /data/scott/EMonchanfurst2Time_0/img_000000000_491_000.tif: 
   [testng] [2024-10-12 05:45:26,399] [pool-1-thread-10] Initializing /data/david/img_000000000_white_000.tif: 
   [testng] [2024-10-12 05:46:17,644] [pool-1-thread-10] Initializing /data/public/1.4.16/serge/Pos4/img_000000000_00-BF0_000.tif: 
   [testng] [2024-10-12 05:46:30,841] [pool-1-thread-5] Initializing /data/public/1.4.22/thomas/test/test_stack/test_stack_MMStack_Pos0_metadata.txt: 
   [testng] [2024-10-12 05:46:48,982] [pool-1-thread-3] Initializing /data/nico/test-ASI-Z_181/img_000000004_Cy3_008.tif: 
   [testng] [2024-10-12 05:47:03,625] [pool-1-thread-3] Used files list does not include base file
   [testng] [2024-10-12 05:47:29,203] [pool-1-thread-5] Initializing /data/eric/GFP-Aladin mCh-Tub_3/Acqusition.xml: 
   [testng] [2024-10-12 05:49:40,369] [pool-1-thread-9] Initializing /data/stanislav/s105-GFP-_0/img_000000000_GFP_000.tif: 
   [testng] [2024-10-12 05:50:08,436] [pool-1-thread-2] Initializing /data/public/1.4.16/serge/Pos2/img_000000000_00-BF0_000.tif: 
   [testng] [2024-10-12 05:51:32,635] [pool-1-thread-1] Initializing /data/public/1.4.23/jens/fucci_GFP-geminin_RFP-cdt1_2_MMStack_Pos0_metadata.txt: 
   [testng] [2024-10-12 05:52:23,432] [pool-1-thread-1] Initializing /data/public/1.4.16/serge/Pos5/img_000000000_00-BF0_000.tif: 
   [testng] [2024-10-12 05:53:24,685] [pool-1-thread-10] Initializing /data/eric/GFP-Aladin mCh-Tub_1/Acqusition.xml: 
   [testng] [2024-10-12 05:55:03,148] [pool-1-thread-4] Initializing /data/nico/test-ASI-Z_181/img_000000004_FITC_006.tif: 
   [testng] [2024-10-12 05:55:17,245] [pool-1-thread-4] Used files list does not include base file
   [testng] [2024-10-12 05:56:13,788] [pool-1-thread-9] Initializing /data/scott/EMoffslicefurst2Time_0/img_000000000_491_000.tif: 
   [testng] [2024-10-12 05:57:21,544] [pool-1-thread-2] Initializing /data/eric/GFP-Aladin mCh-Tub_4/Acqusition.xml: 
   [testng] [2024-10-12 05:58:36,842] [pool-1-thread-6] Initializing /data/eric/GFP-Aladin mCh-Tub_5/Acqusition.xml: 
   [testng] [2024-10-12 06:00:28,711] [pool-1-thread-5] Initializing /data/eric/GFP-Aladin mCh-Tub_0/Acqusition.xml: 
   [testng] [2024-10-12 06:00:42,065] [pool-1-thread-1] Initializing /data/public/1.4.22/sebastien/Test_Dataset_MultiPosition_Stack_1_MMStack_Pos0_metadata.txt: 
   [testng] [2024-10-12 06:02:04,135] [pool-1-thread-10] Initializing /data/qa-4984/img_000000000__000.tif: 
   [testng] [2024-10-12 06:02:45,553] [pool-1-thread-9] Initializing /data/nico/test_1/Acqusition.xml: 
   [testng] [2024-10-12 06:03:06,972] [pool-1-thread-10] Initializing /data/public/1.4.22/thomas/test/test2_sep/Pos0/metadata.txt: 
   [testng] [2024-10-12 06:04:04,647] [pool-1-thread-1] Initializing /data/scott/EMonslicefurst2Time_0/img_000000000_491_000.tif: 
   [testng] [2024-10-12 06:04:35,351] [pool-1-thread-10] Initializing /data/nico/test-ASI-Z_181/img_000000004_Cy3_007.tif: 
   [testng] [2024-10-12 06:04:49,052] [pool-1-thread-10] Used files list does not include base file
   [testng] [2024-10-12 06:08:13,698] [pool-1-thread-9] Initializing /data/nico/test-ASI-Z_181/img_000000004_Cy3_009.tif: 
   [testng] [2024-10-12 06:08:28,538] [pool-1-thread-9] Used files list does not include base file
   [testng] [2024-10-12 06:08:50,132] [pool-1-thread-1] Initializing /data/public/1.4.22/thomas/test/test2_stack/MMStack_Pos0_metadata.txt: 
   [testng] [2024-10-12 06:09:37,268] [pool-1-thread-1] Initializing /data/colin/20121205_H_rel_3c_0nm_1/img_000000000_Cy5_000.tif: 
   [testng] [2024-10-12 06:11:37,151] [pool-1-thread-11] Initializing /data/public/1.4.16/serge/Pos3/img_000000000_00-BF0_000.tif: 
   [testng] [2024-10-12 06:11:46,667] [pool-1-thread-8] Initializing /data/qa-17040/hyper2.0_1_MMStack_1-Pos_000_001_metadata.txt: 
   [testng] [2024-10-12 06:12:33,546] [pool-1-thread-8] Initializing /data/nico/test-ASI-Z_181/img_000000004_FITC_008.tif: 
   [testng] [2024-10-12 06:12:48,120] [pool-1-thread-8] Used files list does not include base file
   [testng] [2024-10-12 06:14:48,776] [pool-1-thread-12] Initializing /data/public/1.4.16/serge/Pos1/img_000000000_00-BF0_000.tif: 
   [testng] 07:06:34,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 07:06:34,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:06:34,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-12_07-06-34.log]
   [testng] 07:06:34,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7be6265f - End of configuration.
   [testng] 07:50:51,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 07:50:51,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:50:51,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-12_07-50-51.log]
   [testng] 07:50:51,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33a8c302 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 2597, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 165 minutes 8 seconds
Finished: SUCCESS