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Started by upstream project "BIOFORMATS-test-repo" build number 218 originally caused by: Started by upstream project "Trigger" build number 245 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins12620270673049485251.sh + '[' ultraview = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34623_merge_ci -v /uod/idr/repos/curated/ultraview:/data -v /uod/idr-scratch/merge-ci/curated/ultraview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 05:49:41,313 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 05:49:41,315 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 05:49:41,315 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:49:41,316 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:49:41,316 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:49:41,317 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:49:41,317 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:49:41,317 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:49:41,317 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:49:41,318 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:49:41,318 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:49:41,318 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:49:41,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:49:41,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:49:41,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:49:41,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:49:41,630 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:49:41,630 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:49:41,630 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:49:41,631 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:49:41,631 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 05:49:41,632 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 05:49:41,632 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 315 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-12 05:49:41,641] [main] java.version = 11.0.16 [testng] 05:49:41,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:49:41,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:49:41,721 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-12_05-49-41.log] [testng] 05:49:41,723 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-10-12 05:49:41,725] [main] testng.directory = /data [testng] [2024-10-12 05:49:41,725] [main] testng.configDirectory = /config [testng] [2024-10-12 05:49:41,735] [main] testng.multiplier = 1.0 [testng] [2024-10-12 05:49:41,736] [main] testng.in-memory = false [testng] [2024-10-12 05:49:41,736] [main] testng.allow-missing = false [testng] [2024-10-12 05:49:41,736] [main] user.language = en [testng] [2024-10-12 05:49:41,736] [main] user.country = ${user.country} [testng] [2024-10-12 05:49:41,736] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-12 05:51:49,666] [main] ---------------------------------------- [testng] [2024-10-12 05:51:49,667] [main] Total files: 19 [testng] [2024-10-12 05:51:49,667] [main] Scan time: 127.929 s (6733 ms/file) [testng] [2024-10-12 05:51:49,667] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-12 05:52:48,239] [pool-1-thread-1] Initializing /data/chad/UltraViewExamples/Bug/CHAD200820080724120123.HTM: [testng] 05:52:48,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:52:48,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:52:48,241 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-12_05-52-48.log] [testng] 05:52:48,242 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c56b3e7 - End of configuration. [testng] [2024-10-12 05:52:50,212] [pool-1-thread-12] Initializing /data/chad/DIC/EZRA200820080626102637.HTM: [testng] 05:52:50,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:52:50,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:52:50,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-12_05-52-50.log] [testng] 05:52:50,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75df628f - End of configuration. [testng] [2024-10-12 05:52:52,911] [pool-1-thread-11] Initializing /data/kate/GreenRedNoZ3T/GreenRedNoZ5T.htm: [testng] 05:52:52,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:52:52,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:52:52,912 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-12_05-52-52.log] [testng] 05:52:52,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dfa20f9 - End of configuration. [testng] [2024-10-12 05:52:55,903] [pool-1-thread-10] Initializing /data/kate/GreenRedNoZnoT/GreenRedNoZNoT.htm: [testng] 05:52:55,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:52:55,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:52:55,904 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-12_05-52-55.log] [testng] 05:52:55,904 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c5f7124 - End of configuration. [testng] [2024-10-12 05:52:59,290] [pool-1-thread-9] Initializing /data/chad/UltraViewExample/doesNot/CHAD200920090331181253.HTM: [testng] 05:52:59,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:52:59,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:52:59,291 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-12_05-52-59.log] [testng] 05:52:59,291 |-INFO in ch.qos.logback.core.sift.SiftProcessor@446d5c89 - End of configuration. [testng] [2024-10-12 05:53:02,326] [pool-1-thread-8] Initializing /data/helio/2 copy Cnn g-tubGFP 111221#20/2 copy Cnn g-tubGFP 111221#20.htm: [testng] 05:53:02,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:53:02,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:53:02,327 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-12_05-53-02.log] [testng] 05:53:02,328 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bbafb1a - End of configuration. [testng] [2024-10-12 05:53:05,787] [pool-1-thread-7] Initializing /data/kate/Neutrophils#18/Neutrophils#18.htm: [testng] 05:53:05,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:53:05,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:53:05,788 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-12_05-53-05.log] [testng] 05:53:05,788 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ccd0076 - End of configuration. [testng] [2024-10-12 05:53:09,013] [pool-1-thread-6] Initializing /data/chad/UltraViewExamples/DIC_200820080724115245/CHAD200820080724115245.HTM: [testng] 05:53:09,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:53:09,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:53:09,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-12_05-53-09.log] [testng] 05:53:09,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@240cd427 - End of configuration. [testng] [2024-10-12 05:53:12,020] [pool-1-thread-5] Initializing /data/chad/20080107130850/IREN200820080107130850.HTM: [testng] 05:53:12,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:53:12,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:53:12,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-12_05-53-12.log] [testng] 05:53:12,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@197090c - End of configuration. [testng] [2024-10-12 05:53:14,317] [pool-1-thread-4] Initializing /data/chad/UltraViewSamples/series 3/RAJE200820080619090142.HTM: [testng] 05:53:14,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:53:14,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:53:14,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-12_05-53-14.log] [testng] 05:53:14,319 |-INFO in ch.qos.logback.core.sift.SiftProcessor@367fbac9 - End of configuration. [testng] [2024-10-12 05:53:17,112] [pool-1-thread-3] Initializing /data/kate/GreenOnlyNoZnoT/GreenOnlyNoZnoT.htm: [testng] 05:53:17,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:53:17,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:53:17,113 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-12_05-53-17.log] [testng] 05:53:17,113 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62c3565d - End of configuration. [testng] [2024-10-12 05:53:19,225] [pool-1-thread-2] Initializing /data/kate/Neutrophils#18/tiffs/Neutrophils#18.htm: [testng] 05:53:19,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:53:19,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:53:19,225 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-12_05-53-19.log] [testng] 05:53:19,226 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f250c58 - End of configuration. [testng] [2024-10-12 05:54:21,371] [pool-1-thread-6] Initializing /data/kate/GreenRed6ZnoT/GreenRed5ZNoT.htm: [testng] [2024-10-12 05:54:23,562] [pool-1-thread-12] Initializing /data/chad/UltraViewExample/works/CHAD200920090331181355.HTM: [testng] [2024-10-12 05:54:46,837] [pool-1-thread-3] Initializing /data/kate/GreenRed6Z3T/GreenRed5Z5T.htm: [testng] [2024-10-12 05:55:01,364] [pool-1-thread-10] Initializing /data/chad/UltraViewExamples/Works/CHAD200820080724121453.HTM: [testng] [2024-10-12 05:55:33,772] [pool-1-thread-11] Initializing /data/todd/movement-1.htm: [testng] [2024-10-12 05:56:35,732] [pool-1-thread-1] Initializing /data/chad/DIC_IREN200820080107120042/IREN200820080107120042.HTM: [testng] 06:55:17,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:55:17,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:55:17,883 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-12_06-55-17.log] [testng] 06:55:17,884 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65453a96 - End of configuration. [testng] 06:57:26,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:57:26,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:57:26,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-12_06-57-26.log] [testng] 06:57:26,393 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cfa8227 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 67 minutes 49 seconds Finished: SUCCESS