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Started by upstream project "BIOFORMATS-test-repo" build number 219 originally caused by: Started by upstream project "Trigger" build number 246 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins9950554875344414506.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34738_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:47:52,539 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:47:52,540 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 01:47:52,540 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:47:52,541 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:47:52,541 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:47:52,542 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:47:52,542 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:47:52,542 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:47:52,542 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:47:52,543 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:47:52,543 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:47:52,543 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:47:52,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:47:52,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:47:52,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:47:52,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:47:52,735 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:47:52,736 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:47:52,736 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:47:52,736 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:47:52,736 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 01:47:52,737 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 01:47:52,738 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-13 01:47:52,746] [main] java.version = 17.0.2 [testng] 01:47:52,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:47:52,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:52,791 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-13_01-47-52.log] [testng] 01:47:52,792 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-13 01:47:52,795] [main] testng.directory = /data [testng] [2024-10-13 01:47:52,795] [main] testng.configDirectory = /config [testng] [2024-10-13 01:47:52,803] [main] testng.multiplier = 1.0 [testng] [2024-10-13 01:47:52,804] [main] testng.in-memory = false [testng] [2024-10-13 01:47:52,804] [main] testng.allow-missing = false [testng] [2024-10-13 01:47:52,804] [main] user.language = en [testng] [2024-10-13 01:47:52,804] [main] user.country = ${user.country} [testng] [2024-10-13 01:47:52,804] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-13 01:48:49,257] [main] ---------------------------------------- [testng] [2024-10-13 01:48:49,257] [main] Total files: 259 [testng] [2024-10-13 01:48:49,258] [main] Scan time: 56.452 s (217 ms/file) [testng] [2024-10-13 01:48:49,258] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-13 01:58:20,417] [pool-1-thread-1] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] 01:58:20,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:58:20,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:20,418 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-13_01-58-20.log] [testng] 01:58:20,419 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63109b71 - End of configuration. [testng] [2024-10-13 01:58:45,441] [pool-1-thread-12] Initializing /data/yasunori/series_1.oib: [testng] 01:58:45,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:58:45,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:45,443 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-13_01-58-45.log] [testng] 01:58:45,443 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67a4a550 - End of configuration. [testng] [2024-10-13 01:58:46,256] [pool-1-thread-11] Initializing /data/simon/never_worked.oib: [testng] 01:58:46,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:58:46,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:46,257 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-13_01-58-46.log] [testng] 01:58:46,258 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38a39334 - End of configuration. [testng] [2024-10-13 01:58:46,626] [pool-1-thread-10] Initializing /data/satoshi/60x_5x_1.oif: [testng] 01:58:46,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:58:46,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:46,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-13_01-58-46.log] [testng] 01:58:46,628 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5039a518 - End of configuration. [testng] [2024-10-13 01:58:47,722] [pool-1-thread-9] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] 01:58:47,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:58:47,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:47,724 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-13_01-58-47.log] [testng] 01:58:47,724 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38de452b - End of configuration. [testng] [2024-10-13 01:58:48,304] [pool-1-thread-8] Initializing /data/david/Image0016.oif: [testng] 01:58:48,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:58:48,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:48,305 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-13_01-58-48.log] [testng] 01:58:48,306 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b8d9f03 - End of configuration. [testng] [2024-10-13 01:58:48,763] [pool-1-thread-7] Initializing /data/brian/PA-GFP-3.oib: [testng] 01:58:48,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:58:48,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:48,764 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-13_01-58-48.log] [testng] 01:58:48,764 |-INFO in ch.qos.logback.core.sift.SiftProcessor@409059a8 - End of configuration. [testng] [2024-10-13 01:58:49,454] [pool-1-thread-6] Initializing /data/stefan/cytosol_03e.oib: [testng] 01:58:49,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:58:49,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:49,455 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-13_01-58-49.log] [testng] 01:58:49,455 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18b33c67 - End of configuration. [testng] [2024-10-13 01:58:50,229] [pool-1-thread-5] Initializing /data/johannes/Image0010/Image0010.oif: [testng] 01:58:50,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:58:50,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:50,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-13_01-58-50.log] [testng] 01:58:50,230 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ddc5575 - End of configuration. [testng] [2024-10-13 01:58:50,800] [pool-1-thread-4] Initializing /data/brian/CFP-GFP2.oib: [testng] 01:58:50,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:58:50,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:50,801 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-13_01-58-50.log] [testng] 01:58:50,801 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44859c38 - End of configuration. [testng] [2024-10-13 01:58:51,166] [pool-1-thread-3] Initializing /data/glen/seqlinestack.oif: [testng] 01:58:51,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:58:51,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:51,167 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-13_01-58-51.log] [testng] 01:58:51,168 |-INFO in ch.qos.logback.core.sift.SiftProcessor@88b8aa - End of configuration. [testng] [2024-10-13 01:58:55,357] [pool-1-thread-2] Initializing /data/glen/Null file/test no change.oif: [testng] 01:58:55,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:58:55,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:55,358 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-13_01-58-55.log] [testng] 01:58:55,358 |-INFO in ch.qos.logback.core.sift.SiftProcessor@377b66b4 - End of configuration. [testng] [2024-10-13 01:59:00,985] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-10-13 01:59:01,979] [pool-1-thread-11] Initializing /data/molly/11OCT7.OIF: [testng] [2024-10-13 01:59:10,664] [pool-1-thread-4] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-10-13 01:59:11,303] [pool-1-thread-12] Initializing /data/marc/V0606L.oib: [testng] [2024-10-13 01:59:13,310] [pool-1-thread-7] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-10-13 01:59:15,389] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-10-13 01:59:20,311] [pool-1-thread-4] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-10-13 01:59:21,912] [pool-1-thread-9] Initializing /data/glen/simulstack.oib: [testng] [2024-10-13 01:59:23,025] [pool-1-thread-6] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-10-13 01:59:28,289] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-10-13 01:59:30,786] [pool-1-thread-9] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-10-13 01:59:31,522] [pool-1-thread-7] Initializing /data/marc/V0606J.oib: [testng] [2024-10-13 01:59:33,385] [pool-1-thread-12] Initializing /data/glen/simulstack.oif: [testng] [2024-10-13 01:59:35,792] [pool-1-thread-2] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2024-10-13 01:59:39,058] [pool-1-thread-4] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-10-13 01:59:39,920] [pool-1-thread-9] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-10-13 01:59:47,507] [pool-1-thread-4] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-10-13 01:59:55,982] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-10-13 02:00:01,716] [pool-1-thread-8] Initializing /data/glen/singlesimul.oib: [testng] [2024-10-13 02:00:03,041] [pool-1-thread-7] Initializing /data/glen/seqlinestack.oib: [testng] [2024-10-13 02:00:06,434] [pool-1-thread-8] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-10-13 02:00:08,343] [pool-1-thread-7] Initializing /data/allan/62909#1.oib: [testng] [2024-10-13 02:00:09,946] [pool-1-thread-8] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-10-13 02:00:11,455] [pool-1-thread-7] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-10-13 02:00:13,866] [pool-1-thread-8] Initializing /data/tom/zseries-test.oib: [testng] [2024-10-13 02:00:15,793] [pool-1-thread-7] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-10-13 02:00:16,778] [pool-1-thread-2] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-10-13 02:00:24,478] [pool-1-thread-4] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-10-13 02:00:28,901] [pool-1-thread-8] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-10-13 02:00:29,452] [pool-1-thread-7] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-10-13 02:00:30,104] [pool-1-thread-4] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-10-13 02:00:34,000] [pool-1-thread-4] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-10-13 02:00:34,896] [pool-1-thread-8] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-10-13 02:00:35,865] [pool-1-thread-7] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-10-13 02:00:38,282] [pool-1-thread-4] Initializing /data/molly/11OCT10.OIF: [testng] [2024-10-13 02:00:56,129] [pool-1-thread-7] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-10-13 02:00:59,461] [pool-1-thread-8] Initializing /data/molly/11OCT6.OIF: [testng] [2024-10-13 02:01:12,407] [pool-1-thread-7] Initializing /data/glen/singleseqframe.oif: [testng] [2024-10-13 02:01:16,629] [pool-1-thread-5] Initializing /data/molly/11OCT4.OIF: [testng] [2024-10-13 02:01:43,831] [pool-1-thread-10] Initializing /data/molly/11OCT8.OIF: [testng] [2024-10-13 02:01:57,753] [pool-1-thread-7] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-10-13 02:02:01,364] [pool-1-thread-7] Initializing /data/david/Image0016.oib: [testng] [2024-10-13 02:02:04,481] [pool-1-thread-7] Initializing /data/glen/singleseqline.oif: [testng] [2024-10-13 02:02:46,762] [pool-1-thread-7] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-10-13 02:02:50,296] [pool-1-thread-7] Initializing /data/aryeh/control_test.oib: [testng] [2024-10-13 02:03:15,363] [pool-1-thread-7] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-10-13 02:03:20,120] [pool-1-thread-7] Initializing /data/jae/Image0001.oib: [testng] [2024-10-13 02:03:24,541] [pool-1-thread-7] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-10-13 02:03:30,584] [pool-1-thread-7] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-10-13 02:03:55,583] [pool-1-thread-7] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-10-13 02:03:59,330] [pool-1-thread-7] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-10-13 02:04:00,675] [pool-1-thread-7] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-10-13 02:04:07,813] [pool-1-thread-7] Initializing /data/johannes/step5b.bmp: [testng] [2024-10-13 02:04:09,987] [pool-1-thread-7] Initializing /data/molly/11OCT9.OIF: [testng] [2024-10-13 02:06:12,381] [pool-1-thread-6] Initializing /data/johannes/step4.bmp: [testng] [2024-10-13 02:06:15,029] [pool-1-thread-6] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-10-13 02:06:20,525] [pool-1-thread-6] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-10-13 02:06:28,738] [pool-1-thread-6] Initializing /data/tom/RGB-1.avi: [testng] [2024-10-13 02:06:32,322] [pool-1-thread-6] Initializing /data/yoshihito/XY.oif: [testng] [2024-10-13 02:06:57,791] [pool-1-thread-6] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-10-13 02:07:01,797] [pool-1-thread-6] Initializing /data/glen/4205basal106072.oif: [testng] [2024-10-13 02:14:26,548] [pool-1-thread-12] Initializing /data/sten/01.oib: [testng] [2024-10-13 02:14:35,050] [pool-1-thread-12] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-10-13 02:14:47,938] [pool-1-thread-12] Initializing /data/molly/11OCT3.OIF: [testng] [2024-10-13 02:17:34,082] [pool-1-thread-9] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-10-13 02:17:41,555] [pool-1-thread-9] Initializing /data/glen/singlesimul.oif: [testng] [2024-10-13 02:19:42,301] [pool-1-thread-9] Initializing /data/simon/used_to_work.oib: [testng] [2024-10-13 02:19:51,209] [pool-1-thread-9] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-10-13 02:19:58,074] [pool-1-thread-9] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-10-13 02:20:05,467] [pool-1-thread-9] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-10-13 02:20:12,437] [pool-1-thread-9] Initializing /data/aryeh/1h.oib: [testng] [2024-10-13 02:20:24,000] [pool-1-thread-9] Initializing /data/glen/111407.oif: [testng] [2024-10-13 02:21:24,484] [pool-1-thread-11] Initializing /data/chris/missegragation-15.oib: [testng] [2024-10-13 02:21:32,558] [pool-1-thread-11] Initializing /data/glen/singleseqframe.oib: [testng] [2024-10-13 02:21:39,301] [pool-1-thread-11] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-10-13 02:26:47,409] [pool-1-thread-5] Initializing /data/monica/Image0056.oif: [testng] [2024-10-13 02:28:37,312] [pool-1-thread-5] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-10-13 02:28:47,462] [pool-1-thread-5] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-10-13 02:28:57,395] [pool-1-thread-5] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-10-13 02:29:06,729] [pool-1-thread-5] Initializing /data/yoshihito/XY.oib: [testng] [2024-10-13 02:29:17,966] [pool-1-thread-5] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-10-13 02:32:38,333] [pool-1-thread-10] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-10-13 02:33:21,425] [pool-1-thread-8] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-10-13 02:33:31,807] [pool-1-thread-3] Initializing /data/christian/20min.oif: [testng] [2024-10-13 02:34:00,709] [pool-1-thread-8] Initializing /data/glen/Null file/test change.oif: [testng] [2024-10-13 02:34:26,451] [pool-1-thread-3] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-10-13 02:34:37,332] [pool-1-thread-3] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-10-13 02:35:13,110] [pool-1-thread-2] Initializing /data/glen/notsaturated.oib: [testng] [2024-10-13 02:35:24,022] [pool-1-thread-2] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-10-13 02:35:26,617] [pool-1-thread-8] Initializing /data/brian/Kaede15.oib: [testng] [2024-10-13 02:35:39,022] [pool-1-thread-8] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-10-13 02:36:33,647] [pool-1-thread-2] Initializing /data/glen/Image0002.oif: [testng] [2024-10-13 02:37:36,738] [pool-1-thread-5] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-10-13 02:37:39,786] [pool-1-thread-5] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-10-13 02:37:48,688] [pool-1-thread-5] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-10-13 02:37:59,996] [pool-1-thread-5] Initializing /data/brian/lambda02nm.oib: [testng] [2024-10-13 02:38:08,908] [pool-1-thread-5] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-10-13 02:38:17,875] [pool-1-thread-5] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-10-13 02:38:26,180] [pool-1-thread-5] Initializing /data/michael/CELL3.oib: [testng] [2024-10-13 02:38:33,917] [pool-1-thread-5] Initializing /data/brian/FLIP.oib: [testng] [2024-10-13 02:38:43,468] [pool-1-thread-5] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-10-13 02:38:52,349] [pool-1-thread-5] Initializing /data/johannes/step1.bmp: [testng] [2024-10-13 02:38:56,036] [pool-1-thread-5] Initializing /data/molly/11OCT5.OIF: [testng] [2024-10-13 02:39:36,051] [pool-1-thread-3] Initializing /data/glen/singleseqline.oib: [testng] [2024-10-13 02:39:43,160] [pool-1-thread-3] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-10-13 02:40:14,317] [pool-1-thread-8] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-10-13 02:40:22,501] [pool-1-thread-8] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-10-13 02:40:30,184] [pool-1-thread-8] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-10-13 02:40:40,683] [pool-1-thread-8] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-10-13 02:41:03,371] [pool-1-thread-11] Initializing /data/johannes/step4b.bmp: [testng] [2024-10-13 02:41:06,819] [pool-1-thread-11] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-10-13 02:42:49,874] [pool-1-thread-4] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-10-13 02:42:52,144] [pool-1-thread-11] Initializing /data/molly/11OCT11.OIF: [testng] [2024-10-13 02:43:35,643] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-10-13 02:43:43,772] [pool-1-thread-4] Initializing /data/karl/Image0009.oib: [testng] [2024-10-13 02:43:50,779] [pool-1-thread-4] Initializing /data/molly/11OCT2.OIF: [testng] [2024-10-13 02:46:06,142] [pool-1-thread-9] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-10-13 02:46:13,622] [pool-1-thread-9] Initializing /data/johannes/step3.bmp: [testng] [2024-10-13 02:46:17,151] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-10-13 02:46:26,233] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-10-13 02:46:34,804] [pool-1-thread-9] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-10-13 02:46:43,079] [pool-1-thread-9] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-10-13 02:50:08,897] [pool-1-thread-6] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-10-13 02:50:22,569] [pool-1-thread-6] Initializing /data/glen/notsaturated.oif: [testng] [2024-10-13 02:51:02,443] [pool-1-thread-10] Initializing /data/kay/IM2pg.oib: [testng] [2024-10-13 02:51:11,904] [pool-1-thread-10] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-10-13 02:52:04,566] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-10-13 02:52:13,022] [pool-1-thread-10] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-10-13 03:01:39,654] [pool-1-thread-6] Initializing /data/pedro/plv-test.oib: [testng] [2024-10-13 03:01:47,613] [pool-1-thread-6] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-10-13 03:01:56,376] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-10-13 03:01:59,887] [pool-1-thread-2] Initializing /data/johannes/step2.bmp: [testng] 03:21:24,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:21:24,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:21:24,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-13_03-21-24.log] [testng] 03:21:24,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c66b75d - End of configuration. [testng] 04:07:01,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:07:01,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:07:01,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-13_04-07-01.log] [testng] 04:07:01,867 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cb50e6 - End of configuration. [testng] 04:45:28,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:45:28,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:45:28,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-13_04-45-28.log] [testng] 04:45:28,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c05640 - End of configuration. [testng] 04:54:14,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:54:14,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:54:14,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-13_04-54-14.log] [testng] 04:54:14,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f467bb9 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 186 minutes 27 seconds Finished: SUCCESS