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Started by upstream project "BIOFORMATS-test-repo" build number 27
originally caused by:
 Started by upstream project "Trigger" build number 30
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins15011957197030843591.sh
+ '[' mrc = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_3476_merge_ci -v /uod/idr/repos/curated/mrc:/data -v /uod/idr-scratch/merge-ci/curated/mrc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 01:39:24,833 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:39:24,835 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
   [testng] 01:39:24,835 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:39:24,836 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:39:24,836 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:39:24,836 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:39:24,836 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:39:24,836 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:39:24,837 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:39:24,837 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:39:24,837 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:39:24,837 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:39:25,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:39:25,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:39:25,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:39:25,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:39:25,105 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:39:25,106 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:39:25,106 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:39:25,106 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:39:25,106 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
   [testng] 01:39:25,107 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
   [testng] 01:39:25,107 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 270 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-04-08 01:39:25,117] [main] java.version = 1.8.0_342
   [testng] 01:39:25,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:39:25,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:25,170 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-08_01-39-25.log]
   [testng] 01:39:25,173 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
   [testng] [2024-04-08 01:39:25,175] [main] testng.directory = /data
   [testng] [2024-04-08 01:39:25,176] [main] testng.configDirectory = /config
   [testng] [2024-04-08 01:39:25,187] [main] testng.multiplier = 1.0
   [testng] [2024-04-08 01:39:25,188] [main] testng.in-memory = false
   [testng] [2024-04-08 01:39:25,188] [main] testng.allow-missing = false
   [testng] [2024-04-08 01:39:25,188] [main] user.language = fr
   [testng] [2024-04-08 01:39:25,188] [main] user.country = FR
   [testng] [2024-04-08 01:39:25,188] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-04-08 01:39:26,620] [main] ----------------------------------------
   [testng] [2024-04-08 01:39:26,621] [main] Total files: 20
   [testng] [2024-04-08 01:39:26,621] [main] Scan time: 1.432 s (71 ms/file)
   [testng] [2024-04-08 01:39:26,621] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 20 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-04-08 01:39:27,207] [pool-1-thread-1] Initializing /data/ascb/c191.st: 
   [testng] 01:39:27,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:39:27,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:27,209 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-08_01-39-27.log]
   [testng] 01:39:27,209 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a2387e - End of configuration.
   [testng] [2024-04-08 01:39:27,238] [pool-1-thread-12] Initializing /data/dan/one.mrc: 
   [testng] 01:39:27,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:39:27,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:27,239 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-08_01-39-27.log]
   [testng] 01:39:27,240 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e4fde3e - End of configuration.
   [testng] [2024-04-08 01:39:27,250] [pool-1-thread-11] Initializing /data/bioformats2raw-198/test_uint8.mrc: 
   [testng] 01:39:27,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:39:27,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:27,251 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-08_01-39-27.log]
   [testng] 01:39:27,251 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62a5b0a - End of configuration.
   [testng] [2024-04-08 01:39:27,258] [pool-1-thread-10] Initializing /data/ascb/c191ali.mrc: 
   [testng] 01:39:27,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:39:27,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:27,259 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-08_01-39-27.log]
   [testng] 01:39:27,259 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22b5285c - End of configuration.
   [testng] [2024-04-08 01:39:27,271] [pool-1-thread-9] Initializing /data/strand/Series1_A.mrc: 
   [testng] 01:39:27,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:39:27,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:27,272 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-08_01-39-27.log]
   [testng] 01:39:27,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f31517f - End of configuration.
   [testng] [2024-04-08 01:39:27,282] [pool-1-thread-8] Initializing /data/dan/two.mrc: 
   [testng] 01:39:27,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:39:27,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:27,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-08_01-39-27.log]
   [testng] 01:39:27,284 |-INFO in ch.qos.logback.core.sift.SiftProcessor@121419fd - End of configuration.
   [testng] [2024-04-08 01:39:27,297] [pool-1-thread-7] Initializing /data/samples/golgi.mrc: 
   [testng] 01:39:27,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:39:27,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:27,298 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-08_01-39-27.log]
   [testng] 01:39:27,299 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44451871 - End of configuration.
   [testng] [2024-04-08 01:39:27,313] [pool-1-thread-6] Initializing /data/ticket-10073/wtjoin4.rec: 
   [testng] 01:39:27,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:39:27,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:27,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-08_01-39-27.log]
   [testng] 01:39:27,315 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f6e3595 - End of configuration.
   [testng] [2024-04-08 01:39:27,328] [pool-1-thread-5] Initializing /data/jcb/thyl-apr23-4.rec: 
   [testng] 01:39:27,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:39:27,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:27,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-08_01-39-27.log]
   [testng] 01:39:27,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e5071e7 - End of configuration.
   [testng] [2024-04-08 01:39:27,347] [pool-1-thread-4] Initializing /data/will/AMI-public-data/GroEL/05may19a_00013gr_00008sq_00002hl_00002ef.mrc: 
   [testng] 01:39:27,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:39:27,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:27,348 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-08_01-39-27.log]
   [testng] 01:39:27,348 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66549e - End of configuration.
   [testng] [2024-04-08 01:39:27,395] [pool-1-thread-3] Initializing /data/public/EMDB/EMD-2225/EMD-2225.map: 
   [testng] 01:39:27,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:39:27,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:27,396 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-08_01-39-27.log]
   [testng] 01:39:27,397 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5efa6fcf - End of configuration.
   [testng] [2024-04-08 01:39:27,433] [pool-1-thread-2] Initializing /data/ascb/514_9903.mrc: 
   [testng] 01:39:27,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:39:27,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:27,434 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-08_01-39-27.log]
   [testng] 01:39:27,434 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3916efee - End of configuration.
   [testng] [2024-04-08 01:39:29,154] [pool-1-thread-3] Initializing /data/dan/three.mrc: 
   [testng] [2024-04-08 01:39:29,163] [pool-1-thread-11] Initializing /data/will/CCDB-3587/wt_g21A2_bin3-ali.mrc: 
   [testng] [2024-04-08 01:39:29,173] [pool-1-thread-7] Initializing /data/will/AMI-public-data/GroEL/05may19a_00013gr_00008sq_00002hl.mrc: 
   [testng] [2024-04-08 01:39:29,183] [pool-1-thread-5] Initializing /data/jcb/thylakoid5.rec: 
   [testng] [2024-04-08 01:39:29,191] [pool-1-thread-1] Initializing /data/gh-3297/old-header/1160-no-endian-marker.mrc: 
   [testng] [2024-04-08 01:39:29,202] [pool-1-thread-10] Initializing /data/ascb/cfa1071.mrc: 
   [testng] [2024-04-08 01:39:29,716] [pool-1-thread-7] Initializing /data/samples/1160.mrc: 
   [testng] [2024-04-08 01:39:29,961] [pool-1-thread-11] Initializing /data/samples/agar-exttype/golgi-modified-AGAR.mrc: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1060, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 12 seconds
Finished: SUCCESS