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Started by upstream project "BIOFORMATS-test-repo" build number 219 originally caused by: Started by upstream project "Trigger" build number 246 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins9130561543753878449.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34825_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 05:32:18,226 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 05:32:18,227 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 05:32:18,227 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:32:18,228 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:32:18,229 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:32:18,229 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:32:18,229 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:32:18,229 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:32:18,230 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:32:18,230 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:32:18,230 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:32:18,231 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:32:18,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:32:18,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:32:18,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:32:18,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:32:18,414 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:32:18,414 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:32:18,414 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:32:18,415 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:32:18,415 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 05:32:18,416 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 05:32:18,416 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-13 05:32:18,424] [main] java.version = 17.0.2 [testng] 05:32:18,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:32:18,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:32:18,465 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-13_05-32-18.log] [testng] 05:32:18,467 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-13 05:32:18,468] [main] testng.directory = /data [testng] [2024-10-13 05:32:18,469] [main] testng.configDirectory = /config [testng] [2024-10-13 05:32:18,477] [main] testng.multiplier = 1.0 [testng] [2024-10-13 05:32:18,477] [main] testng.in-memory = false [testng] [2024-10-13 05:32:18,477] [main] testng.allow-missing = false [testng] [2024-10-13 05:32:18,478] [main] user.language = en [testng] [2024-10-13 05:32:18,478] [main] user.country = ${user.country} [testng] [2024-10-13 05:32:18,478] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-13 05:35:17,772] [main] ---------------------------------------- [testng] [2024-10-13 05:35:17,772] [main] Total files: 15735 [testng] [2024-10-13 05:35:17,773] [main] Scan time: 179.294 s (11 ms/file) [testng] [2024-10-13 05:35:17,773] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-13 05:37:29,998] [pool-1-thread-1] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] 05:37:29,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:37:29,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:37:30,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-13_05-37-30.log] [testng] 05:37:30,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6939bf0d - End of configuration. [testng] [2024-10-13 05:37:30,585] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] 05:37:30,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:37:30,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:37:30,586 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-13_05-37-30.log] [testng] 05:37:30,586 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fc21711 - End of configuration. [testng] [2024-10-13 05:37:31,638] [pool-1-thread-11] Initializing /data/converted/converted/damian.tif: [testng] 05:37:31,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:37:31,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:37:31,639 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-13_05-37-31.log] [testng] 05:37:31,640 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cbea213 - End of configuration. [testng] [2024-10-13 05:37:32,343] [pool-1-thread-10] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] 05:37:32,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:37:32,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:37:32,345 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-13_05-37-32.log] [testng] 05:37:32,345 |-INFO in ch.qos.logback.core.sift.SiftProcessor@189bbe5c - End of configuration. [testng] [2024-10-13 05:37:34,085] [pool-1-thread-9] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] 05:37:34,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:37:34,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:37:34,086 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-13_05-37-34.log] [testng] 05:37:34,086 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e3c886b - End of configuration. [testng] [2024-10-13 05:37:34,900] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] 05:37:34,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:37:34,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:37:34,901 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-13_05-37-34.log] [testng] 05:37:34,901 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d1dbe20 - End of configuration. [testng] [2024-10-13 05:37:35,766] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] 05:37:35,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:37:35,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:37:35,767 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-13_05-37-35.log] [testng] 05:37:35,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4032987e - End of configuration. [testng] [2024-10-13 05:37:36,548] [pool-1-thread-6] Initializing /data/converted/sebastien/test.tif: [testng] 05:37:36,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:37:36,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:37:36,549 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-13_05-37-36.log] [testng] 05:37:36,550 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74fa9a51 - End of configuration. [testng] [2024-10-13 05:37:37,292] [pool-1-thread-5] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] 05:37:37,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:37:37,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:37:37,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-13_05-37-37.log] [testng] 05:37:37,293 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b511c76 - End of configuration. [testng] [2024-10-13 05:37:38,036] [pool-1-thread-4] Initializing /data/othmar/mozaic.tif: [testng] 05:37:38,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:37:38,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:37:38,036 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-13_05-37-38.log] [testng] 05:37:38,037 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b6cb122 - End of configuration. [testng] [2024-10-13 05:37:38,749] [pool-1-thread-3] Initializing /data/converted/michel/b.tif: [testng] 05:37:38,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:37:38,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:37:38,750 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-13_05-37-38.log] [testng] 05:37:38,751 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66c3fa18 - End of configuration. [testng] [2024-10-13 05:37:39,407] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] 05:37:39,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:37:39,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:37:39,407 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-13_05-37-39.log] [testng] 05:37:39,408 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18b1697e - End of configuration. [testng] [2024-10-13 05:37:59,583] [pool-1-thread-11] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-10-13 05:38:06,251] [pool-1-thread-1] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2024-10-13 05:38:07,544] [pool-1-thread-3] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-10-13 05:38:33,154] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-10-13 05:40:42,176] [pool-1-thread-5] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-10-13 05:40:47,046] [pool-1-thread-4] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-10-13 05:41:00,798] [pool-1-thread-1] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-10-13 05:41:18,826] [pool-1-thread-1] Initializing /data/converted/michel/e.tif: [testng] [2024-10-13 05:42:00,703] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-10-13 05:42:26,804] [pool-1-thread-4] Initializing /data/converted/michel/a.tif: [testng] [2024-10-13 05:42:33,892] [pool-1-thread-11] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-10-13 05:42:47,021] [pool-1-thread-4] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-10-13 05:43:01,160] [pool-1-thread-11] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-10-13 05:43:19,171] [pool-1-thread-2] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-10-13 05:43:31,465] [pool-1-thread-7] Initializing /data/converted/kelsey/432x342BW.tif: [testng] [2024-10-13 05:43:50,999] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-10-13 05:43:57,425] [pool-1-thread-2] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-10-13 05:44:02,290] [pool-1-thread-12] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-10-13 05:44:23,546] [pool-1-thread-6] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-10-13 05:44:25,074] [pool-1-thread-7] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-10-13 05:44:54,676] [pool-1-thread-6] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-10-13 05:45:17,102] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-10-13 05:45:18,838] [pool-1-thread-3] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-10-13 05:45:38,659] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-10-13 05:46:03,376] [pool-1-thread-9] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-10-13 05:46:11,202] [pool-1-thread-7] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-10-13 05:46:26,780] [pool-1-thread-2] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-10-13 05:46:35,878] [pool-1-thread-8] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-10-13 05:46:52,592] [pool-1-thread-11] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-10-13 05:47:14,463] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-10-13 05:47:46,823] [pool-1-thread-12] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-10-13 05:48:18,426] [pool-1-thread-12] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-10-13 05:48:41,088] [pool-1-thread-12] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-10-13 05:48:58,072] [pool-1-thread-3] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-10-13 05:49:04,782] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-10-13 05:53:36,683] [pool-1-thread-6] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-10-13 05:54:34,431] [pool-1-thread-11] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-10-13 05:55:16,850] [pool-1-thread-4] Initializing /data/scott/Slide133-08.tif: [testng] [2024-10-13 05:55:49,177] [pool-1-thread-1] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-10-13 05:55:51,169] [pool-1-thread-4] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-10-13 05:56:35,731] [pool-1-thread-1] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-10-13 05:56:52,300] [pool-1-thread-11] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-10-13 05:57:10,866] [pool-1-thread-9] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-10-13 05:57:31,622] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-10-13 05:57:45,171] [pool-1-thread-9] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-10-13 06:00:15,169] [pool-1-thread-12] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-10-13 06:02:26,808] [pool-1-thread-6] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-10-13 06:05:31,241] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-10-13 06:06:38,658] [pool-1-thread-8] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-10-13 06:08:01,629] [pool-1-thread-11] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-10-13 06:09:42,812] [pool-1-thread-1] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-10-13 06:10:23,018] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-10-13 06:16:19,973] [pool-1-thread-10] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-10-13 06:17:05,147] [pool-1-thread-10] Initializing /data/converted/converted/mri-stack.tif: [testng] [2024-10-13 06:17:29,500] [pool-1-thread-3] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-10-13 06:17:45,792] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-10-13 06:18:46,762] [pool-1-thread-3] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-10-13 06:21:30,111] [pool-1-thread-4] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-10-13 06:22:15,657] [pool-1-thread-4] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-10-13 06:22:19,379] [pool-1-thread-8] Initializing /data/scott/Slide133-04.tif: [testng] [2024-10-13 06:23:08,314] [pool-1-thread-8] Initializing /data/converted/converted/2chz.tif: [testng] [2024-10-13 06:23:28,579] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-10-13 06:26:17,226] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-10-13 06:28:18,456] [pool-1-thread-4] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-10-13 06:28:21,263] [pool-1-thread-5] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-10-13 06:28:24,148] [pool-1-thread-8] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-10-13 06:29:22,183] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-10-13 06:29:34,892] [pool-1-thread-5] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-10-13 06:29:44,157] [pool-1-thread-6] Initializing /data/converted/michel/c.tif: [testng] [2024-10-13 06:30:15,317] [pool-1-thread-5] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-10-13 06:30:30,617] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-10-13 06:30:39,537] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-10-13 06:30:45,313] [pool-1-thread-6] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-10-13 06:31:41,556] [pool-1-thread-5] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-10-13 06:33:53,974] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-10-13 06:35:35,227] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-10-13 06:35:38,334] [pool-1-thread-7] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-10-13 06:36:45,297] [pool-1-thread-3] Initializing /data/converted/dietmar/138.tif: [testng] [2024-10-13 06:38:14,565] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-10-13 06:39:26,751] [pool-1-thread-9] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-10-13 06:42:20,530] [pool-1-thread-4] Initializing /data/converted/dietmar/137.tif: [testng] [2024-10-13 06:42:44,995] [pool-1-thread-10] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-10-13 06:42:58,053] [pool-1-thread-8] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-10-13 06:44:02,627] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-10-13 06:45:17,135] [pool-1-thread-6] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-10-13 06:45:26,815] [pool-1-thread-10] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-10-13 06:45:57,316] [pool-1-thread-1] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2024-10-13 06:46:00,191] [pool-1-thread-5] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-10-13 06:46:12,290] [pool-1-thread-6] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-10-13 06:46:36,443] [pool-1-thread-10] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-10-13 06:46:38,809] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-10-13 06:46:52,526] [pool-1-thread-6] Initializing /data/scott/Slide133-11.tif: [testng] [2024-10-13 06:47:29,184] [pool-1-thread-3] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-10-13 06:47:32,570] [pool-1-thread-10] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-10-13 06:47:38,455] [pool-1-thread-6] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-10-13 06:48:40,158] [pool-1-thread-10] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-10-13 06:49:12,986] [pool-1-thread-10] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-10-13 06:49:32,503] [pool-1-thread-7] Initializing /data/converted/michel/d.tif: [testng] [2024-10-13 06:49:44,242] [pool-1-thread-12] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-10-13 06:50:13,296] [pool-1-thread-7] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-10-13 06:50:22,401] [pool-1-thread-12] Initializing /data/scott/Slide133-01.tif: [testng] [2024-10-13 06:50:45,057] [pool-1-thread-7] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-10-13 06:50:57,872] [pool-1-thread-12] Initializing /data/converted/lior/live+cf5b.tif: [testng] [2024-10-13 06:51:05,009] [pool-1-thread-1] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-10-13 06:51:39,365] [pool-1-thread-1] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-10-13 06:51:59,951] [pool-1-thread-12] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-10-13 06:52:20,467] [pool-1-thread-1] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-10-13 06:52:27,573] [pool-1-thread-4] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-10-13 06:52:56,312] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-10-13 06:53:06,755] [pool-1-thread-9] Initializing /data/converted/nicolas/image.tif: [testng] [2024-10-13 06:53:12,097] [pool-1-thread-4] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-10-13 06:53:26,012] [pool-1-thread-4] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-10-13 06:53:39,417] [pool-1-thread-9] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] 07:39:53,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:39:53,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:39:53,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-13_07-39-53.log] [testng] 07:39:53,373 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a8120 - End of configuration. [testng] 07:44:54,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:44:54,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:44:54,880 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-13_07-44-54.log] [testng] 07:44:54,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5039de18 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 132 minutes 42 seconds Finished: SUCCESS