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Started by upstream project "BIOFORMATS-test-repo" build number 220 originally caused by: Started by upstream project "Trigger" build number 247 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins1895997301756609109.sh + '[' gatan-dm2 = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_34927_merge_ci -v /uod/idr/repos/curated/gatan-dm2:/data -v /uod/idr-scratch/merge-ci/curated/gatan-dm2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:39:45,862 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:39:45,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 02:39:45,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:39:45,865 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:39:45,865 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:39:45,865 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:39:45,866 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:39:45,866 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:39:45,866 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:39:45,867 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:39:45,867 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:39:45,867 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:39:46,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:39:46,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:39:46,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:39:46,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:39:46,134 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:39:46,134 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:39:46,134 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:39:46,135 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:39:46,135 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 02:39:46,136 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 02:39:46,136 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 270 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-14 02:39:46,146] [main] java.version = 1.8.0_342 [testng] 02:39:46,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:39:46,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:46,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-14_02-39-46.log] [testng] 02:39:46,196 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-14 02:39:46,198] [main] testng.directory = /data [testng] [2024-10-14 02:39:46,198] [main] testng.configDirectory = /config [testng] [2024-10-14 02:39:46,210] [main] testng.multiplier = 1.0 [testng] [2024-10-14 02:39:46,210] [main] testng.in-memory = false [testng] [2024-10-14 02:39:46,210] [main] testng.allow-missing = false [testng] [2024-10-14 02:39:46,211] [main] user.language = fr [testng] [2024-10-14 02:39:46,211] [main] user.country = FR [testng] [2024-10-14 02:39:46,211] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-14 02:40:02,502] [main] ---------------------------------------- [testng] [2024-10-14 02:40:02,502] [main] Total files: 25 [testng] [2024-10-14 02:40:02,502] [main] Scan time: 16.291 s (651 ms/file) [testng] [2024-10-14 02:40:02,502] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-14 02:40:21,186] [pool-1-thread-1] Initializing /data/imagic/TEM 10118.dm2: [testng] 02:40:21,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:40:21,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:40:21,187 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-14_02-40-21.log] [testng] 02:40:21,187 |-INFO in ch.qos.logback.core.sift.SiftProcessor@504ebfd1 - End of configuration. [testng] [2024-10-14 02:40:21,485] [pool-1-thread-12] Initializing /data/pang/DLMeD2E1_010500x03.dm2: [testng] 02:40:21,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:40:21,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:40:21,487 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-14_02-40-21.log] [testng] 02:40:21,488 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7054967c - End of configuration. [testng] [2024-10-14 02:40:21,774] [pool-1-thread-11] Initializing /data/pang/signed: [testng] 02:40:21,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:40:21,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:40:21,775 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-14_02-40-21.log] [testng] 02:40:21,775 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2da123a8 - End of configuration. [testng] [2024-10-14 02:40:22,103] [pool-1-thread-10] Initializing /data/imagic/not read correctly/Zucchini_preview.png: [testng] 02:40:22,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:40:22,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:40:22,104 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-14_02-40-22.log] [testng] 02:40:22,105 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d96353 - End of configuration. [testng] [2024-10-14 02:40:22,157] [pool-1-thread-9] Initializing /data/imagic/not read correctly/Zucchini.dm2: [testng] 02:40:22,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:40:22,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:40:22,158 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-14_02-40-22.log] [testng] 02:40:22,158 |-INFO in ch.qos.logback.core.sift.SiftProcessor@763a9d0f - End of configuration. [testng] [2024-10-14 02:40:22,427] [pool-1-thread-8] Initializing /data/pang/screen capture of metadata/tem_dm_microscope_info.png: [testng] 02:40:22,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:40:22,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:40:22,428 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-14_02-40-22.log] [testng] 02:40:22,428 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ca5412a - End of configuration. [testng] [2024-10-14 02:40:22,483] [pool-1-thread-7] Initializing /data/pang/screen capture of metadata/tem_dm_keywords_info.png: [testng] 02:40:22,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:40:22,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:40:22,484 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-14_02-40-22.log] [testng] 02:40:22,484 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cad303 - End of configuration. [testng] [2024-10-14 02:40:22,533] [pool-1-thread-6] Initializing /data/imagic/1-1.dm2: [testng] 02:40:22,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:40:22,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:40:22,534 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-14_02-40-22.log] [testng] 02:40:22,534 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e2cc3a3 - End of configuration. [testng] [2024-10-14 02:40:22,803] [pool-1-thread-5] Initializing /data/pang/screen capture of metadata/tem_dm_general_info.png: [testng] 02:40:22,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:40:22,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:40:22,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-14_02-40-22.log] [testng] 02:40:22,804 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e1d044f - End of configuration. [testng] [2024-10-14 02:40:22,854] [pool-1-thread-4] Initializing /data/pang/unproc-auto: [testng] 02:40:22,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:40:22,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:40:22,855 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-14_02-40-22.log] [testng] 02:40:22,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3597ecc4 - End of configuration. [testng] [2024-10-14 02:40:23,183] [pool-1-thread-3] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info2.png: [testng] 02:40:23,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:40:23,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:40:23,184 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-14_02-40-23.log] [testng] 02:40:23,184 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cb997f7 - End of configuration. [testng] [2024-10-14 02:40:23,232] [pool-1-thread-2] Initializing /data/pang/grating025k.dm2: [testng] 02:40:23,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:40:23,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:40:23,233 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-14_02-40-23.log] [testng] 02:40:23,233 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3572de15 - End of configuration. [testng] [2024-10-14 02:40:26,262] [pool-1-thread-10] Initializing /data/pang/10500x-o4: [testng] [2024-10-14 02:40:26,588] [pool-1-thread-8] Initializing /data/imagic/Histiocyte in Skin Dermis.dm2: [testng] [2024-10-14 02:40:26,863] [pool-1-thread-5] Initializing /data/imagic/not read correctly/Abeta Moon_preview.png: [testng] [2024-10-14 02:40:26,908] [pool-1-thread-3] Initializing /data/imagic/not read correctly/Abeta Moon.dm2: [testng] [2024-10-14 02:40:27,172] [pool-1-thread-7] Initializing /data/imagic/13008.dm2: [testng] [2024-10-14 02:40:27,788] [pool-1-thread-11] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info1.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 49 seconds Finished: SUCCESS