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Started by upstream project "BIOFORMATS-test-repo" build number 220 originally caused by: Started by upstream project "Trigger" build number 247 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins10625021410436733405.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_34945_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 03:08:23,559 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:08:23,561 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 03:08:23,561 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:08:23,562 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:08:23,562 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:08:23,562 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:08:23,562 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:08:23,562 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:08:23,563 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:08:23,563 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:08:23,563 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:08:23,563 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:08:23,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:08:23,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:08:23,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:08:23,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:08:23,815 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:08:23,815 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:08:23,816 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:08:23,816 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:08:23,816 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 03:08:23,817 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 03:08:23,817 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 254 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-14 03:08:23,826] [main] java.version = 1.8.0_342 [testng] 03:08:23,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:08:23,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:08:23,873 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-14_03-08-23.log] [testng] 03:08:23,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-14 03:08:23,876] [main] testng.directory = /data [testng] [2024-10-14 03:08:23,877] [main] testng.configDirectory = /config [testng] [2024-10-14 03:08:23,888] [main] testng.multiplier = 1.0 [testng] [2024-10-14 03:08:23,889] [main] testng.in-memory = false [testng] [2024-10-14 03:08:23,889] [main] testng.allow-missing = false [testng] [2024-10-14 03:08:23,889] [main] user.language = fr [testng] [2024-10-14 03:08:23,889] [main] user.country = FR [testng] [2024-10-14 03:08:23,889] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-14 03:21:13,324] [main] ---------------------------------------- [testng] [2024-10-14 03:21:13,325] [main] Total files: 7329 [testng] [2024-10-14 03:21:13,325] [main] Scan time: 769.435 s (104 ms/file) [testng] [2024-10-14 03:21:13,325] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-14 03:32:32,698] [pool-1-thread-1] Initializing /data/ascb/golgi marker.tif: [testng] 03:32:32,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:32:32,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:32,699 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-14_03-32-32.log] [testng] 03:32:32,700 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14fbcd7 - End of configuration. [testng] [2024-10-14 03:32:34,157] [pool-1-thread-12] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] 03:32:34,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:32:34,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:34,158 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-14_03-32-34.log] [testng] 03:32:34,159 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b51be5b - End of configuration. [testng] [2024-10-14 03:32:35,412] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] 03:32:35,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:32:35,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:35,413 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-14_03-32-35.log] [testng] 03:32:35,413 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68e413d9 - End of configuration. [testng] [2024-10-14 03:32:36,768] [pool-1-thread-10] Initializing /data/pang/z-stack/Z Series.tif: [testng] 03:32:36,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:32:36,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:36,769 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-14_03-32-36.log] [testng] 03:32:36,769 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27a3cba2 - End of configuration. [testng] [2024-10-14 03:32:38,100] [pool-1-thread-9] Initializing /data/chris/Stream-2(partial).stk: [testng] 03:32:38,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:32:38,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:38,101 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-14_03-32-38.log] [testng] 03:32:38,101 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ce44452 - End of configuration. [testng] [2024-10-14 03:32:42,892] [pool-1-thread-8] Initializing /data/thomas/test.tif: [testng] 03:32:42,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:32:42,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:42,892 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-14_03-32-42.log] [testng] 03:32:42,893 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ec9b5a8 - End of configuration. [testng] [2024-10-14 03:32:44,634] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] 03:32:44,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:32:44,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:44,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-14_03-32-44.log] [testng] 03:32:44,636 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f0ba2a4 - End of configuration. [testng] [2024-10-14 03:33:04,405] [pool-1-thread-6] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] 03:33:04,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:33:04,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:33:04,407 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-14_03-33-04.log] [testng] 03:33:04,407 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c886409 - End of configuration. [testng] [2024-10-14 03:33:05,787] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] 03:33:05,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:33:05,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:33:05,788 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-14_03-33-05.log] [testng] 03:33:05,788 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a7a44e4 - End of configuration. [testng] [2024-10-14 03:33:07,256] [pool-1-thread-4] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] 03:33:07,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:33:07,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:33:07,257 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-14_03-33-07.log] [testng] 03:33:07,257 |-INFO in ch.qos.logback.core.sift.SiftProcessor@429ab20c - End of configuration. [testng] [2024-10-14 03:33:09,595] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] 03:33:09,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:33:09,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:33:09,596 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-14_03-33-09.log] [testng] 03:33:09,597 |-INFO in ch.qos.logback.core.sift.SiftProcessor@222a749f - End of configuration. [testng] [2024-10-14 03:33:11,238] [pool-1-thread-3] Used files list does not include base file [testng] [2024-10-14 03:33:11,240] [pool-1-thread-2] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] 03:33:11,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:33:11,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:33:11,241 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-14_03-33-11.log] [testng] 03:33:11,241 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58976654 - End of configuration. [testng] [2024-10-14 03:33:23,803] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-10-14 03:33:26,926] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-10-14 03:33:28,242] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-10-14 03:33:30,439] [pool-1-thread-10] Used files list does not include base file [testng] [2024-10-14 03:33:30,440] [pool-1-thread-5] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-10-14 03:33:34,699] [pool-1-thread-4] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-10-14 03:33:36,106] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-14 03:33:37,521] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-10-14 03:33:39,085] [pool-1-thread-2] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-10-14 03:33:48,454] [pool-1-thread-8] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-10-14 03:33:50,515] [pool-1-thread-2] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-10-14 03:33:52,675] [pool-1-thread-6] Initializing /data/alex/Selected FITC.stk: [testng] [2024-10-14 03:33:56,589] [pool-1-thread-3] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-10-14 03:33:58,693] [pool-1-thread-9] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-10-14 03:34:02,682] [pool-1-thread-12] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-10-14 03:34:06,329] [pool-1-thread-8] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-10-14 03:34:10,982] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-10-14 03:34:13,905] [pool-1-thread-6] Used files list does not include base file [testng] [2024-10-14 03:34:13,956] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-10-14 03:34:17,411] [pool-1-thread-1] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-10-14 03:34:19,008] [pool-1-thread-4] Initializing /data/samples/diatoms3d.stk: [testng] [2024-10-14 03:34:24,826] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-10-14 03:34:27,708] [pool-1-thread-2] Initializing /data/josh/2101to800.stk: [testng] [2024-10-14 03:34:37,872] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-10-14 03:34:39,744] [pool-1-thread-1] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-10-14 03:34:43,534] [pool-1-thread-4] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-10-14 03:34:49,234] [pool-1-thread-3] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-10-14 03:35:07,231] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-10-14 03:35:09,227] [pool-1-thread-12] Initializing /data/josh/2101to600e.stk: [testng] [2024-10-14 03:35:18,472] [pool-1-thread-8] Initializing /data/samples/zserEight.stk: [testng] [2024-10-14 03:35:20,042] [pool-1-thread-10] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-10-14 03:35:52,317] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-10-14 03:36:11,805] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-10-14 03:36:15,288] [pool-1-thread-9] Used files list does not include base file [testng] [2024-10-14 03:36:15,448] [pool-1-thread-1] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-10-14 03:36:17,954] [pool-1-thread-8] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-10-14 03:36:22,081] [pool-1-thread-6] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-10-14 03:36:24,361] [pool-1-thread-4] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-10-14 03:36:37,399] [pool-1-thread-4] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-10-14 03:36:41,010] [pool-1-thread-8] Initializing /data/josh/2101to400astk.stk: [testng] [2024-10-14 03:37:01,125] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-10-14 03:37:16,337] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-14 03:37:25,477] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-10-14 03:37:28,505] [pool-1-thread-1] Used files list does not include base file [testng] [2024-10-14 03:37:31,383] [pool-1-thread-6] Initializing /data/qa-16887/m-01.tif: [testng] [2024-10-14 03:37:44,335] [pool-1-thread-2] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-10-14 03:37:46,909] [pool-1-thread-7] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-10-14 03:37:50,725] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-10-14 03:37:53,192] [pool-1-thread-6] Used files list does not include base file [testng] [2024-10-14 03:37:53,254] [pool-1-thread-12] Initializing /data/qa-16915/m-04.tif: [testng] [2024-10-14 03:38:03,474] [pool-1-thread-7] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-10-14 03:38:07,630] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-10-14 03:38:10,725] [pool-1-thread-2] Used files list does not include base file [testng] [2024-10-14 03:38:10,725] [pool-1-thread-3] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-10-14 03:38:14,551] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-10-14 03:38:25,485] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-10-14 03:38:28,758] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-10-14 03:38:32,991] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-10-14 03:38:41,989] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-10-14 03:38:44,103] [pool-1-thread-9] Initializing /data/steve/Experiment2.stk: [testng] [2024-10-14 03:38:50,804] [pool-1-thread-6] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-10-14 03:38:57,684] [pool-1-thread-9] Initializing 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Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-10-14 03:39:30,361] [pool-1-thread-4] Used files list does not include base file [testng] [2024-10-14 03:39:30,406] [pool-1-thread-8] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-10-14 03:39:33,055] [pool-1-thread-6] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-10-14 03:39:34,575] [pool-1-thread-1] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-10-14 03:39:36,812] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-10-14 03:39:43,961] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-10-14 03:39:45,749] [pool-1-thread-3] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-10-14 03:39:47,525] [pool-1-thread-1] Initializing /data/josh/2101to600b.stk: [testng] [2024-10-14 03:40:02,911] [pool-1-thread-2] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-10-14 03:40:04,978] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-10-14 03:40:06,467] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-10-14 03:40:19,876] [pool-1-thread-6] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-10-14 03:40:23,416] [pool-1-thread-9] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-10-14 03:40:26,960] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-10-14 03:40:30,234] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-10-14 03:40:33,697] [pool-1-thread-2] Initializing 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03:41:46,364] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-10-14 03:41:48,826] [pool-1-thread-7] Used files list does not include base file [testng] [2024-10-14 03:41:53,825] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-10-14 03:41:55,831] [pool-1-thread-1] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-10-14 03:41:58,993] [pool-1-thread-4] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-10-14 03:42:09,266] [pool-1-thread-1] Initializing /data/samples/zseries.stk: [testng] [2024-10-14 03:42:11,940] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-10-14 03:42:15,087] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-10-14 03:42:17,012] [pool-1-thread-4] Used files list does not include base file [testng] [2024-10-14 03:42:20,145] [pool-1-thread-3] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-10-14 03:42:23,591] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-10-14 03:42:29,043] [pool-1-thread-6] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-10-14 03:42:31,214] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-10-14 03:42:38,025] [pool-1-thread-1] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-10-14 03:42:40,979] [pool-1-thread-3] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-10-14 03:42:45,287] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-10-14 03:42:50,725] [pool-1-thread-12] Initializing /data/jerome/deconv.STK: [testng] [2024-10-14 03:42:52,802] [pool-1-thread-4] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-10-14 03:42:58,239] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-10-14 03:43:00,220] [pool-1-thread-11] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-10-14 03:43:06,190] [pool-1-thread-12] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-10-14 03:43:08,528] [pool-1-thread-5] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-10-14 03:43:11,586] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-10-14 03:43:14,321] [pool-1-thread-4] Used files list does not include base file [testng] [2024-10-14 03:43:14,359] [pool-1-thread-2] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-10-14 03:43:18,495] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-14 03:43:23,008] [pool-1-thread-6] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-10-14 03:43:30,651] [pool-1-thread-5] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-10-14 03:43:34,465] [pool-1-thread-7] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-10-14 03:43:37,905] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-14 03:43:40,085] [pool-1-thread-2] Initializing /data/jae/RGB_s34.tif: [testng] [2024-10-14 03:43:47,728] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-10-14 03:44:00,241] [pool-1-thread-9] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-10-14 03:44:02,395] [pool-1-thread-1] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-10-14 03:44:09,325] [pool-1-thread-2] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-10-14 03:44:13,246] [pool-1-thread-7] Initializing /data/thomas/t_test2001.tif: [testng] [2024-10-14 03:44:17,968] [pool-1-thread-11] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-10-14 03:44:23,059] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-14 03:44:26,797] [pool-1-thread-7] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-10-14 03:44:30,789] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-10-14 03:44:33,282] [pool-1-thread-12] Used files list does not include base file [testng] [2024-10-14 03:44:34,343] [pool-1-thread-11] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-10-14 03:44:38,841] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-10-14 03:44:57,143] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-10-14 03:44:59,647] [pool-1-thread-5] Used files list does not include base file [testng] [2024-10-14 03:44:59,736] [pool-1-thread-4] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-10-14 03:45:07,292] [pool-1-thread-7] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-10-14 03:45:28,130] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-10-14 03:45:37,666] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-10-14 03:45:39,383] [pool-1-thread-4] Initializing /data/aaron/metamorph.stk: [testng] [2024-10-14 03:45:41,027] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-10-14 03:45:50,643] [pool-1-thread-4] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-10-14 03:45:54,228] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-10-14 03:45:59,001] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-10-14 03:46:02,431] [pool-1-thread-5] Initializing /data/cumol-test-series/23.001: [testng] [2024-10-14 03:46:06,577] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-10-14 03:46:08,491] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-10-14 03:46:22,150] [pool-1-thread-12] Initializing /data/samples/10xcalib.stk: [testng] [2024-10-14 03:46:25,249] [pool-1-thread-3] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-10-14 03:46:27,962] [pool-1-thread-9] Initializing /data/josh/2101to600f.stk: [testng] [2024-10-14 03:46:51,702] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-10-14 03:46:56,080] [pool-1-thread-12] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-10-14 03:47:04,022] [pool-1-thread-11] Initializing /data/ascb/mt aim.tif: [testng] [2024-10-14 03:47:07,487] [pool-1-thread-4] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-10-14 03:47:12,526] [pool-1-thread-12] Initializing /data/qa-16915/m-02.tif: [testng] [2024-10-14 03:47:20,114] [pool-1-thread-11] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-10-14 03:47:26,995] [pool-1-thread-3] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-10-14 03:47:30,725] [pool-1-thread-5] Initializing /data/josh/2101to600astk.stk: [testng] [2024-10-14 03:48:10,384] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-10-14 03:48:12,145] [pool-1-thread-2] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-10-14 03:48:19,895] [pool-1-thread-11] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-10-14 03:48:24,918] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-10-14 03:48:26,717] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-10-14 03:48:33,354] [pool-1-thread-11] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-10-14 03:48:38,433] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-14 03:48:40,277] [pool-1-thread-2] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-10-14 03:48:45,492] [pool-1-thread-11] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-10-14 03:49:28,861] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-10-14 03:49:39,751] [pool-1-thread-2] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-10-14 03:49:43,342] [pool-1-thread-12] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-10-14 03:49:46,578] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-14 03:49:55,333] [pool-1-thread-12] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-10-14 03:50:05,089] [pool-1-thread-12] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-10-14 03:50:11,617] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-10-14 03:50:18,908] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-10-14 03:50:29,803] [pool-1-thread-4] Initializing /data/grant/X.STK: [testng] [2024-10-14 03:50:32,616] [pool-1-thread-2] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-10-14 03:50:40,368] [pool-1-thread-9] Initializing /data/david/tl4.tif: [testng] [2024-10-14 03:50:50,065] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-10-14 03:50:57,623] [pool-1-thread-9] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-10-14 03:51:01,578] [pool-1-thread-4] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-10-14 03:51:25,392] [pool-1-thread-2] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-10-14 03:51:43,019] [pool-1-thread-2] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-10-14 03:51:49,293] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-10-14 03:51:52,435] [pool-1-thread-2] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-10-14 03:51:55,350] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-14 03:52:04,221] [pool-1-thread-2] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-10-14 03:52:08,473] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-10-14 03:52:18,619] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-10-14 03:52:23,371] [pool-1-thread-3] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-10-14 03:52:29,137] [pool-1-thread-9] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-10-14 03:52:38,674] [pool-1-thread-9] Initializing /data/samples/zser24.stk: [testng] [2024-10-14 03:52:46,921] [pool-1-thread-9] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-10-14 03:52:54,573] [pool-1-thread-3] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-10-14 03:53:00,591] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-10-14 03:53:03,642] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-10-14 03:53:08,531] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-10-14 03:53:21,638] [pool-1-thread-5] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-10-14 03:53:23,393] [pool-1-thread-9] Initializing /data/steve/Experiment2.tif: [testng] 07:19:54,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:19:54,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:19:54,960 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-14_07-19-54.log] [testng] 07:19:54,960 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51b7ad1 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 251 minutes 36 seconds Finished: SUCCESS