![[Jenkins]](/jenkins/static/f5fa13f0/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 220 originally caused by: Started by upstream project "Trigger" build number 247 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins9730648207998076002.sh + '[' imspector = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_34982_merge_ci -v /uod/idr/repos/curated/imspector:/data -v /uod/idr-scratch/merge-ci/curated/imspector:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 05:02:40,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:02:40,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:02:40,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:02:40,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:02:40,677 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:02:40,678 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:02:40,678 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:02:40,679 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:02:40,679 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1139b2f3 - End of configuration. [testng] 05:02:40,680 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3f197a46 - Registering current configuration as safe fallback point [testng] 05:02:40,680 |-INFO in ch.qos.logback.classic.util.ContextInitializer@636be97c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 494 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-14 05:02:40,693] [main] java.version = 1.8.0_342 [testng] 05:02:40,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:02:40,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:02:40,776 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-14_05-02-40.log] [testng] 05:02:40,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-14 05:02:40,780] [main] testng.directory = /data [testng] [2024-10-14 05:02:40,780] [main] testng.configDirectory = /config [testng] [2024-10-14 05:02:40,909] [main] testng.multiplier = 1.0 [testng] [2024-10-14 05:02:40,909] [main] testng.in-memory = false [testng] [2024-10-14 05:02:40,909] [main] testng.allow-missing = false [testng] [2024-10-14 05:02:40,909] [main] user.language = fr [testng] [2024-10-14 05:02:40,909] [main] user.country = FR [testng] [2024-10-14 05:02:40,909] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-14 05:02:57,920] [main] ---------------------------------------- [testng] [2024-10-14 05:02:57,920] [main] Total files: 29 [testng] [2024-10-14 05:02:57,921] [main] Scan time: 17.011 s (586 ms/file) [testng] [2024-10-14 05:02:57,921] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-14 05:03:22,254] [pool-1-thread-1] Initializing /data/qa-7992/ArrayIndexOutOfBoundsException.msr: [testng] 05:03:22,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:03:22,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:22,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-14_05-03-22.log] [testng] 05:03:22,256 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33d9af79 - End of configuration. [testng] [2024-10-14 05:03:22,824] [pool-1-thread-12] Initializing /data/qa-27309/181109_e3_cut.msr: [testng] 05:03:22,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:03:22,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:22,825 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-14_05-03-22.log] [testng] 05:03:22,825 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d5cf032 - End of configuration. [testng] [2024-10-14 05:03:23,412] [pool-1-thread-11] Initializing /data/qa-7992/NegativeArraySizeException_small.msr: [testng] 05:03:23,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:03:23,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:23,413 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-14_05-03-23.log] [testng] 05:03:23,414 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e741401 - End of configuration. [testng] [2024-10-14 05:03:24,029] [pool-1-thread-10] Initializing /data/qa-7992/IllegalArgumentException.msr: [testng] 05:03:24,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:03:24,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:24,030 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-14_05-03-24.log] [testng] 05:03:24,031 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27af67ec - End of configuration. [testng] [2024-10-14 05:03:24,609] [pool-1-thread-9] Initializing /data/paul/msr files - Paul Thomas UEA/Lifetime file.msr: [testng] 05:03:24,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:03:24,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:24,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-14_05-03-24.log] [testng] 05:03:24,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37c93bc8 - End of configuration. [testng] [2024-10-14 05:03:25,230] [pool-1-thread-8] Initializing /data/qa-9468/HPDR10467U-40-VD0191-red-100pc-without-tube.msr: [testng] 05:03:25,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:03:25,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:25,231 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-14_05-03-25.log] [testng] 05:03:25,232 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ead0d30 - End of configuration. [testng] [2024-10-14 05:03:25,875] [pool-1-thread-7] Initializing /data/qa-11369/01 - 770nm FITC - HybridPMT.msr: [testng] 05:03:25,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:03:25,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:25,875 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-14_05-03-25.log] [testng] 05:03:25,876 |-INFO in ch.qos.logback.core.sift.SiftProcessor@153895cc - End of configuration. [testng] [2024-10-14 05:03:26,296] [pool-1-thread-6] Initializing /data/qa-7936/02 - not working.msr: [testng] 05:03:26,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:03:26,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:26,298 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-14_05-03-26.log] [testng] 05:03:26,298 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35d51427 - End of configuration. [testng] [2024-10-14 05:03:26,826] [pool-1-thread-5] Initializing /data/qa-4929/OMERO data/01 - 27hpf_f2-GFP-wt1b+rfp-flk1 - 3channel-z-stack.msr: [testng] 05:03:26,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:03:26,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:26,826 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-14_05-03-26.log] [testng] 05:03:26,827 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6577f752 - End of configuration. [testng] [2024-10-14 05:03:27,388] [pool-1-thread-4] Initializing /data/qa-7702/trim- scope msr z-stacks/02 - Arf_FLIM_z-stack_1.msr: [testng] 05:03:27,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:03:27,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:27,389 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-14_05-03-27.log] [testng] 05:03:27,389 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37d436cd - End of configuration. [testng] [2024-10-14 05:03:27,946] [pool-1-thread-3] Initializing /data/qa-11369/02 - 70 - 1 - tp1 - x16 TCSPC.msr: [testng] 05:03:27,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:03:27,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:27,947 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-14_05-03-27.log] [testng] 05:03:27,962 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c5d9ae7 - End of configuration. [testng] [2024-10-14 05:03:28,491] [pool-1-thread-2] Initializing /data/qa-7668/01 - RhodamineB - FLIM test - 4 binning.msr: [testng] 05:03:28,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:03:28,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:28,491 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-14_05-03-28.log] [testng] 05:03:28,492 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6441ed2b - End of configuration. [testng] [2024-10-14 05:03:35,347] [pool-1-thread-12] Initializing /data/qa-7668/01 - RhodamineB - FLIM test - 4 binning_12-08-53_TCSPC_C0.ome.tif: [testng] [2024-10-14 05:03:36,493] [pool-1-thread-9] Initializing /data/qa-7702/trim- scope msr z-stacks/02 - 500x500x105_1046x1046x57_1.875um_steps.msr: [testng] [2024-10-14 05:03:37,161] [pool-1-thread-4] Initializing /data/qa-7658/Document1_13-09-25.msr: [testng] [2024-10-14 05:03:37,751] [pool-1-thread-11] Initializing /data/paul/msr files - Paul Thomas UEA/Single channel single slice 4 tiles.msr: [testng] [2024-10-14 05:03:38,386] [pool-1-thread-3] Initializing /data/qa-7936/z-TC - for LOCI.msr: [testng] [2024-10-14 05:03:38,946] [pool-1-thread-6] Initializing /data/qa-4929/OMERO data/01 - urea_irf_image_TCSPC-data.msr: [testng] [2024-10-14 05:03:39,352] [pool-1-thread-7] Initializing /data/paul/msr files - Paul Thomas UEA/Single channel Zstack.msr: [testng] [2024-10-14 05:03:39,889] [pool-1-thread-1] Initializing /data/qa-17102/1 channel binning 4 time series.msr: [testng] [2024-10-14 05:03:40,532] [pool-1-thread-10] Initializing /data/qa-17102/2 channels FLIM z stack.msr: [testng] [2024-10-14 05:03:41,103] [pool-1-thread-5] Initializing /data/qa-17102/2 channels FLIM time series.msr: [testng] [2024-10-14 05:03:41,584] [pool-1-thread-8] Initializing /data/qa-7702/trim- scope msr z-stacks/02 - Arf_z-stack_FLIM_TDC_C0.ome.tif: [testng] [2024-10-14 05:03:42,758] [pool-1-thread-2] Initializing /data/paul/msr files - Paul Thomas UEA/Two channel Zstack.msr: [testng] [2024-10-14 05:03:48,470] [pool-1-thread-5] Initializing /data/qa-7702/trim- scope msr z-stacks/02 - 500x500x105_1046x1046x57_1.875um_steps/02 - 500x500x105_1046x1046x57_1_875um_steps_11-34-02_PMT - PMT [PMT1] _C0.ome.tif: [testng] [2024-10-14 05:03:51,494] [pool-1-thread-10] Initializing /data/qa-7936/01 - working.msr: [testng] [2024-10-14 05:03:52,260] [pool-1-thread-1] Initializing /data/qa-17102/1 channel binning 8 time series.msr: [testng] [2024-10-14 05:03:52,871] [pool-1-thread-9] Initializing /data/paul/msr files - Paul Thomas UEA/Two channel single slice.msr: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 42 seconds Finished: SUCCESS