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Started by upstream project "BIOFORMATS-test-repo" build number 220 originally caused by: Started by upstream project "Trigger" build number 247 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins593953219095941392.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_34994_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 05:32:01,011 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 05:32:01,013 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 05:32:01,013 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:32:01,014 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:32:01,014 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:32:01,014 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:32:01,014 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:32:01,014 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:32:01,015 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:32:01,015 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:32:01,015 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:32:01,015 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:32:01,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:32:01,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:32:01,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:32:01,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:32:01,298 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:32:01,298 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:32:01,298 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:32:01,299 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:32:01,299 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 05:32:01,300 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 05:32:01,301 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 286 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-14 05:32:01,312] [main] java.version = 1.8.0_342 [testng] 05:32:01,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:32:01,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:32:01,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-14_05-32-01.log] [testng] 05:32:01,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-14 05:32:01,372] [main] testng.directory = /data [testng] [2024-10-14 05:32:01,373] [main] testng.configDirectory = /config [testng] [2024-10-14 05:32:01,388] [main] testng.multiplier = 1.0 [testng] [2024-10-14 05:32:01,388] [main] testng.in-memory = false [testng] [2024-10-14 05:32:01,388] [main] testng.allow-missing = false [testng] [2024-10-14 05:32:01,388] [main] user.language = fr [testng] [2024-10-14 05:32:01,388] [main] user.country = FR [testng] [2024-10-14 05:32:01,388] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-14 05:32:06,993] [main] ---------------------------------------- [testng] [2024-10-14 05:32:06,993] [main] Total files: 32 [testng] [2024-10-14 05:32:06,993] [main] Scan time: 5.604 s (175 ms/file) [testng] [2024-10-14 05:32:06,994] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-14 05:32:35,578] [pool-1-thread-1] Initializing /data/samples/Criterion.1sc: [testng] 05:32:35,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:32:35,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:32:35,580 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-14_05-32-35.log] [testng] 05:32:35,581 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fc5ed7f - End of configuration. [testng] [2024-10-14 05:32:36,138] [pool-1-thread-12] Initializing /data/keith/test.1sc: [testng] 05:32:36,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:32:36,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:32:36,140 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-14_05-32-36.log] [testng] 05:32:36,140 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23a39483 - End of configuration. [testng] [2024-10-14 05:32:36,674] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] 05:32:36,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:32:36,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:32:36,675 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-14_05-32-36.log] [testng] 05:32:36,676 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b8d52b1 - End of configuration. [testng] [2024-10-14 05:32:39,092] [pool-1-thread-10] Initializing /data/geert/bad example1.1sc.jpg: [testng] 05:32:39,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:32:39,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:32:39,093 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-14_05-32-39.log] [testng] 05:32:39,093 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ecf34a2 - End of configuration. [testng] [2024-10-14 05:32:39,300] [pool-1-thread-9] Initializing /data/samples/imagesEight.1sc: [testng] 05:32:39,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:32:39,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:32:39,301 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-14_05-32-39.log] [testng] 05:32:39,302 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69a92e9f - End of configuration. [testng] [2024-10-14 05:32:39,814] [pool-1-thread-8] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] 05:32:39,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:32:39,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:32:39,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-14_05-32-39.log] [testng] 05:32:39,815 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6dfd3f1c - End of configuration. [testng] [2024-10-14 05:32:40,375] [pool-1-thread-7] Initializing /data/keith/PF020328saur v3.1sc: [testng] 05:32:40,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:32:40,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:32:40,376 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-14_05-32-40.log] [testng] 05:32:40,376 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2773a99e - End of configuration. [testng] [2024-10-14 05:32:40,952] [pool-1-thread-6] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] 05:32:40,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:32:40,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:32:40,953 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-14_05-32-40.log] [testng] 05:32:40,953 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fab45db - End of configuration. [testng] [2024-10-14 05:32:41,501] [pool-1-thread-5] Initializing /data/geert/bad example1.jpg: [testng] 05:32:41,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:32:41,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:32:41,502 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-14_05-32-41.log] [testng] 05:32:41,502 |-INFO in ch.qos.logback.core.sift.SiftProcessor@652f2830 - End of configuration. [testng] [2024-10-14 05:32:41,693] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] 05:32:41,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:32:41,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:32:41,694 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-14_05-32-41.log] [testng] 05:32:41,694 |-INFO in ch.qos.logback.core.sift.SiftProcessor@270816a3 - End of configuration. [testng] [2024-10-14 05:32:42,227] [pool-1-thread-3] Initializing /data/keith/test2.1sc: [testng] 05:32:42,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:32:42,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:32:42,228 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-14_05-32-42.log] [testng] 05:32:42,228 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26530c2b - End of configuration. [testng] [2024-10-14 05:32:42,704] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] 05:32:42,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:32:42,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:32:42,705 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-14_05-32-42.log] [testng] 05:32:42,706 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48c3625e - End of configuration. [testng] [2024-10-14 05:32:51,404] [pool-1-thread-9] Initializing /data/qa-16880/c-src v7.1sc: [testng] [2024-10-14 05:32:51,960] [pool-1-thread-7] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] [2024-10-14 05:32:53,715] [pool-1-thread-3] Initializing /data/qa-29469/bad3.1sc: [testng] [2024-10-14 05:32:54,200] [pool-1-thread-12] Initializing /data/qa-29469/good.1sc: [testng] [2024-10-14 05:32:54,684] [pool-1-thread-6] Initializing /data/keith/pg020410saur3.1sc: [testng] [2024-10-14 05:32:55,142] [pool-1-thread-4] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] [2024-10-14 05:32:55,618] [pool-1-thread-8] Initializing /data/geert/bad example1.1sc: [testng] [2024-10-14 05:32:56,128] [pool-1-thread-1] Initializing /data/adrian/test_img.1sc: [testng] [2024-10-14 05:32:56,620] [pool-1-thread-10] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] [2024-10-14 05:32:58,423] [pool-1-thread-5] Initializing /data/geert/good example1.1sc: [testng] [2024-10-14 05:33:03,893] [pool-1-thread-6] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] [2024-10-14 05:33:04,470] [pool-1-thread-9] Initializing /data/qa-29459/bad.jpg: [testng] [2024-10-14 05:33:04,720] [pool-1-thread-4] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] [2024-10-14 05:33:06,742] [pool-1-thread-12] Initializing /data/david/Opened in imageJ.tiff: [testng] [2024-10-14 05:33:08,607] [pool-1-thread-1] Initializing /data/geert/good example1.1sc.jpg: [testng] [2024-10-14 05:33:08,777] [pool-1-thread-3] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] [2024-10-14 05:33:09,320] [pool-1-thread-11] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] [2024-10-14 05:33:10,943] [pool-1-thread-2] Initializing /data/qa-29469/bad2.1sc: [testng] [2024-10-14 05:33:11,452] [pool-1-thread-5] Initializing /data/qa-29459/bad.1sc: [testng] [2024-10-14 05:33:11,923] [pool-1-thread-8] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 23 seconds Finished: SUCCESS