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Started by upstream project "BIOFORMATS-test-repo" build number 221 originally caused by: Started by upstream project "Trigger" build number 248 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins9795889403108782265.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35036_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:31:28,114 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:31:28,116 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 01:31:28,116 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:31:28,117 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:31:28,117 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:31:28,118 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:31:28,118 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:31:28,118 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:31:28,118 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:31:28,119 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:31:28,119 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:31:28,120 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:31:28,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:31:28,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:31:28,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:31:28,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:31:28,323 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:31:28,323 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:31:28,324 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:31:28,324 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:31:28,324 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 01:31:28,325 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 01:31:28,325 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 207 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-15 01:31:28,334] [main] java.version = 11.0.16 [testng] 01:31:28,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:31:28,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:28,378 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-15_01-31-28.log] [testng] 01:31:28,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-10-15 01:31:28,382] [main] testng.directory = /data [testng] [2024-10-15 01:31:28,382] [main] testng.configDirectory = /config [testng] [2024-10-15 01:31:28,391] [main] testng.multiplier = 1.0 [testng] [2024-10-15 01:31:28,392] [main] testng.in-memory = false [testng] [2024-10-15 01:31:28,393] [main] testng.allow-missing = false [testng] [2024-10-15 01:31:28,393] [main] user.language = en [testng] [2024-10-15 01:31:28,393] [main] user.country = ${user.country} [testng] [2024-10-15 01:31:28,393] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-15 01:35:11,083] [main] ---------------------------------------- [testng] [2024-10-15 01:35:11,083] [main] Total files: 4426 [testng] [2024-10-15 01:35:11,084] [main] Scan time: 222.69 s (50 ms/file) [testng] [2024-10-15 01:35:11,084] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 722 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-15 02:24:33,312] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x64.tiff: [testng] 02:24:33,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:24:33,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:33,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-15_02-24-33.log] [testng] 02:24:33,315 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d2ac6a8 - End of configuration. [testng] [2024-10-15 02:24:34,039] [pool-1-thread-12] Initializing /data/misc/wtembryo.tiff: [testng] 02:24:34,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:24:34,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:34,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-15_02-24-34.log] [testng] 02:24:34,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45e4599f - End of configuration. [testng] [2024-10-15 02:24:35,558] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z022.tif: [testng] 02:24:35,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:24:35,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:35,559 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-15_02-24-35.log] [testng] 02:24:35,560 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dbe1014 - End of configuration. [testng] [2024-10-15 02:24:37,426] [pool-1-thread-10] Initializing /data/brian/Alx-488-pk.tif: [testng] 02:24:37,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:24:37,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:37,427 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-15_02-24-37.log] [testng] 02:24:37,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@411beb76 - End of configuration. [testng] [2024-10-15 02:24:38,682] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0255.TIF: [testng] 02:24:38,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:24:38,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:38,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-15_02-24-38.log] [testng] 02:24:38,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bfb9063 - End of configuration. [testng] [2024-10-15 02:24:39,565] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z046.tif: [testng] 02:24:39,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:24:39,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:39,566 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-15_02-24-39.log] [testng] 02:24:39,566 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72c9093e - End of configuration. [testng] [2024-10-15 02:24:40,421] [pool-1-thread-7] Initializing /data/ascb/FND-15_PorterFast_4800.tif: [testng] 02:24:40,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:24:40,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:40,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-15_02-24-40.log] [testng] 02:24:40,422 |-INFO in ch.qos.logback.core.sift.SiftProcessor@601ffa54 - End of configuration. [testng] [2024-10-15 02:24:43,620] [pool-1-thread-6] Initializing /data/public/libtiff/oxford.tif: [testng] 02:24:43,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:24:43,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:43,621 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-15_02-24-43.log] [testng] 02:24:43,621 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12dc6aa9 - End of configuration. [testng] [2024-10-15 02:24:45,216] [pool-1-thread-5] Initializing /data/brian/Ch1_fld1.tif: [testng] 02:24:45,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:24:45,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:45,217 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-15_02-24-45.log] [testng] 02:24:45,217 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59a25f84 - End of configuration. [testng] [2024-10-15 02:24:46,682] [pool-1-thread-4] Initializing /data/josiah/cell-Z17.C0.tiff: [testng] 02:24:46,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:24:46,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:46,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-15_02-24-46.log] [testng] 02:24:46,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47f9d87a - End of configuration. [testng] [2024-10-15 02:24:47,995] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z034.tif: [testng] 02:24:47,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:24:47,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:47,996 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-15_02-24-47.log] [testng] 02:24:47,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6451152a - End of configuration. [testng] [2024-10-15 02:24:49,687] [pool-1-thread-2] Initializing /data/jae/first image.tif: [testng] 02:24:49,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:24:49,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:49,688 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-15_02-24-49.log] [testng] 02:24:49,689 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19225dae - End of configuration. [testng] [2024-10-15 02:25:04,962] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x48.tiff: [testng] [2024-10-15 02:25:08,148] [pool-1-thread-10] Initializing /data/josiah/cell-Z6.C1.tiff: [testng] [2024-10-15 02:25:09,544] [pool-1-thread-9] Initializing /data/josiah/cell-Z20.C0.tiff: [testng] [2024-10-15 02:25:10,851] [pool-1-thread-4] Initializing /data/samples/melissa/imagej-units/1000cmx1000cm-test.tif: [testng] [2024-10-15 02:25:12,471] [pool-1-thread-12] Initializing /data/josiah/cell-Z16.C1.tiff: [testng] [2024-10-15 02:25:13,878] [pool-1-thread-3] Initializing /data/big-images/2kx2k.tif: [testng] [2024-10-15 02:25:15,996] [pool-1-thread-11] Initializing /data/josiah/cell-Z9.C0.tiff: [testng] [2024-10-15 02:25:17,761] [pool-1-thread-8] Initializing /data/kevino/_BF_00000.tif: [testng] [2024-10-15 02:25:19,530] [pool-1-thread-6] Initializing /data/josiah/cell-Z10.C0.tiff: [testng] [2024-10-15 02:25:20,970] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z040.tif: [testng] [2024-10-15 02:25:30,959] [pool-1-thread-7] Initializing /data/public/condensation/E4.pattern7.tif: [testng] [2024-10-15 02:25:34,217] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z041.tif: [testng] [2024-10-15 02:25:40,093] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z007.tif: [testng] [2024-10-15 02:25:42,739] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0212.TIF: [testng] [2024-10-15 02:25:46,497] [pool-1-thread-4] Initializing /data/josh/jnb1s1_raw0232.TIF: [testng] [2024-10-15 02:25:50,095] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z048.tif: [testng] [2024-10-15 02:25:52,518] [pool-1-thread-9] Initializing /data/josiah/cell-Z36.C0.tiff: [testng] [2024-10-15 02:25:54,230] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x64.tiff: [testng] [2024-10-15 02:25:56,406] [pool-1-thread-12] Initializing /data/public/libtiff/jim___gg.tif: [testng] [2024-10-15 02:25:58,885] [pool-1-thread-2] Initializing /data/kevino/_BF_00004.tif: [testng] [2024-10-15 02:26:00,026] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z017.tif: [testng] [2024-10-15 02:26:02,498] [pool-1-thread-5] Initializing /data/wayne/mBoeglin_lzw/mm_7.1.2.0.tif: [testng] [2024-10-15 02:26:08,938] [pool-1-thread-7] Initializing /data/unknown/epsImgColony.tif: [testng] [2024-10-15 02:26:09,776] [pool-1-thread-1] Initializing /data/imagesc-50416/_Fadeh_Alonzy_OD_Lower__M5_A8_F950nmD_I022_20130424115201.tiff: [testng] [2024-10-15 02:26:13,677] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z055.tif: [testng] [2024-10-15 02:26:14,968] [pool-1-thread-8] Initializing /data/josiah/cell-Z6.C0.tiff: [testng] [2024-10-15 02:26:16,472] [pool-1-thread-6] Initializing /data/glen/742015a20x3middle16bit.tif: [testng] [2024-10-15 02:26:17,819] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z005.tif: [testng] [2024-10-15 02:26:19,060] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z031.tif: [testng] [2024-10-15 02:26:20,260] [pool-1-thread-11] Initializing /data/ascb/CYT-91_PasolliMouse1a_4800.tif: [testng] [2024-10-15 02:26:21,488] [pool-1-thread-3] Initializing /data/tom/TLD - n000000_Stamp.tif: [testng] [2024-10-15 02:26:22,546] [pool-1-thread-12] Initializing /data/public/libtiff/cramps.tif: [testng] [2024-10-15 02:26:23,590] [pool-1-thread-2] Initializing /data/public/condensation/B12.pattern2.tif: [testng] [2024-10-15 02:26:25,271] [pool-1-thread-5] Initializing /data/tom-kazimiers/test_noexiftool.tiff: [testng] [2024-10-15 02:26:33,872] [pool-1-thread-7] Initializing /data/tamjid/Image_843.tif: [testng] [2024-10-15 02:26:35,210] [pool-1-thread-8] Initializing /data/koen/nt3_cortex_rots_thresh45.tif: [testng] [2024-10-15 02:26:36,571] [pool-1-thread-4] Initializing /data/josiah/cell-Z19.C1.tiff: [testng] [2024-10-15 02:26:38,638] [pool-1-thread-9] Initializing /data/ascb/FND-10_PorterMitochondria_4800.tif: [testng] [2024-10-15 02:26:40,436] [pool-1-thread-1] Initializing /data/ascb/CYT-77_PasolliMouse2_4800.tif: [testng] [2024-10-15 02:26:41,978] [pool-1-thread-10] Initializing /data/josiah/cell-Z23.C1.tiff: [testng] [2024-10-15 02:26:43,110] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z007.tif: [testng] [2024-10-15 02:26:44,021] [pool-1-thread-12] Initializing /data/ascb/CYT-49_FriendSecretoryPair_4800.tif: [testng] [2024-10-15 02:26:44,966] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0257.TIF: [testng] [2024-10-15 02:26:46,574] [pool-1-thread-2] Initializing /data/public/condensation/C4.pattern5.tif: [testng] [2024-10-15 02:26:47,669] [pool-1-thread-5] Initializing /data/damian/36m.tiff: [testng] [2024-10-15 02:26:56,323] [pool-1-thread-11] Initializing /data/qa-17411/_t20271.tif: [testng] [2024-10-15 02:27:04,714] [pool-1-thread-4] Initializing 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Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x16.tiff: [testng] [2024-10-15 03:13:43,659] [pool-1-thread-11] Initializing /data/josiah/cell-Z24.C0.tiff: [testng] [2024-10-15 03:13:51,061] [pool-1-thread-5] Initializing /data/public/cellprofiler/fruit-fly-cells/POS218.pattern/POS218.pattern: [testng] [2024-10-15 03:14:34,024] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z027.tif: [testng] [2024-10-15 03:14:42,608] [pool-1-thread-12] Initializing /data/tom-kazimiers/test_exiftool2_resave2.tiff: [testng] [2024-10-15 03:14:50,280] [pool-1-thread-3] Initializing /data/paulh/quickpollen4_w2_t1.tif: [testng] [2024-10-15 03:14:57,997] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0219.TIF: [testng] [2024-10-15 03:15:05,601] [pool-1-thread-10] Initializing /data/josiah/cell-Z37.C0.tiff: [testng] [2024-10-15 03:15:13,205] [pool-1-thread-1] Initializing /data/jerome/e346_plt1(m)_F1-6.tif: [testng] [2024-10-15 03:15:21,699] [pool-1-thread-2] Initializing /data/julien/Chadisoukkarieh.TIF: [testng] [2024-10-15 03:15:44,688] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z061.tif: [testng] [2024-10-15 03:15:52,499] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z009.tif: [testng] [2024-10-15 03:16:00,989] [pool-1-thread-4] Initializing /data/jayne/Zst_47/WTZER_Series47_z000_ch00.tif: [testng] [2024-10-15 03:16:12,114] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z032.tif: [testng] [2024-10-15 03:16:20,391] [pool-1-thread-3] Initializing /data/public/condensation/A5.pattern1.tif: [testng] [2024-10-15 03:16:28,791] [pool-1-thread-12] Initializing /data/stephane/test sortie_t0000_z0000.tif: [testng] [2024-10-15 03:16:37,150] [pool-1-thread-8] Initializing /data/josiah/cell-Z15.C1.tiff: [testng] [2024-10-15 03:16:42,923] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-01.tiff: [testng] [2024-10-15 03:16:51,826] [pool-1-thread-10] Initializing /data/josiah/cell-Z21.C0.tiff: [testng] [2024-10-15 03:16:57,958] [pool-1-thread-9] Initializing /data/josiah/cell-Z29.C1.tiff: [testng] [2024-10-15 03:17:04,112] [pool-1-thread-1] Initializing /data/misc/ms-paint.png: [testng] [2024-10-15 03:17:08,560] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C0_Z032.tif: [testng] [2024-10-15 03:17:16,184] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0204.TIF: [testng] [2024-10-15 03:17:30,954] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z024.tif: [testng] [2024-10-15 03:17:38,210] [pool-1-thread-8] Initializing /data/chris-lesiak/half-float.tiff: [testng] [2024-10-15 03:17:45,028] [pool-1-thread-11] Initializing /data/stephane/Copy of listeria + clathrin1_w3Cy5.tif: [testng] [2024-10-15 03:17:49,596] [pool-1-thread-3] Initializing /data/josh/NESa_C2_TP1.tiff: [testng] [2024-10-15 03:17:56,805] [pool-1-thread-12] Initializing /data/curtis/itk/MG63_0_1.tif: [testng] [2024-10-15 03:18:03,313] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z046.tif: [testng] [2024-10-15 03:18:14,320] [pool-1-thread-7] Initializing /data/josh/stack.tif: [testng] [2024-10-15 03:18:32,225] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C0_Z026.tif: [testng] [2024-10-15 03:18:41,646] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0239.TIF: [testng] [2024-10-15 03:19:05,002] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C1_Z035.tif: [testng] [2024-10-15 03:19:18,928] [pool-1-thread-6] Initializing /data/josiah/cell-Z36.C1.tiff: [testng] [2024-10-15 03:19:35,348] [pool-1-thread-11] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs010.TIF: [testng] [2024-10-15 03:19:49,481] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z045.tif: [testng] [2024-10-15 03:19:59,800] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z032.tif: [testng] [2024-10-15 03:20:20,602] [pool-1-thread-2] Initializing 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/data/samples/tiling-variants/data-layout-64x64-chunky-strips-60.tiff: [testng] [2024-10-15 03:26:34,660] [pool-1-thread-8] Initializing /data/ascb/CYT-57_HowellClatharinDetails_4800.tif: [testng] [2024-10-15 03:26:48,411] [pool-1-thread-3] Initializing /data/carolyn/tumor_4.tif: [testng] [2024-10-15 03:26:54,944] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x48.tiff: [testng] [2024-10-15 03:27:01,165] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z001.tif: [testng] [2024-10-15 03:27:10,436] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z017.tif: [testng] [2024-10-15 03:27:28,934] [pool-1-thread-5] Initializing /data/ascb/CYT-44_HowellAcinarLabeled_4800.tif: [testng] [2024-10-15 03:27:48,055] [pool-1-thread-9] Initializing /data/carolyn/tumor_2.tif: [testng] [2024-10-15 03:28:04,597] [pool-1-thread-6] Initializing /data/josiah/cell-Z5.C0.tiff: [testng] [2024-10-15 03:28:21,561] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x32.tiff: [testng] [2024-10-15 03:28:33,121] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-64x32.tiff: [testng] [2024-10-15 03:28:44,715] [pool-1-thread-7] Initializing /data/josh/jnb1s1_raw0236.TIF: [testng] [2024-10-15 03:28:57,098] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z006.tif: [testng] [2024-10-15 03:29:07,900] [pool-1-thread-2] Initializing /data/josiah/cell-Z22.C1.tiff: [testng] [2024-10-15 03:29:17,829] [pool-1-thread-11] Initializing /data/josiah/cell-Z0.C0.tiff: [testng] [2024-10-15 03:29:27,712] [pool-1-thread-3] Initializing /data/ascb/bad/FND-16_FawcettPrincipal_4800.tif: [testng] [2024-10-15 03:30:05,264] [pool-1-thread-4] Initializing /data/chris-wood/ticket-10050/cjw_stowers.tif: [testng] [2024-10-15 03:30:25,103] [pool-1-thread-5] Initializing /data/samples/cielab/Ski_TC8-03_sRGB_lab.tif: [testng] [2024-10-15 03:30:36,396] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z026.tif: [testng] [2024-10-15 03:31:01,386] [pool-1-thread-8] Initializing /data/public/condensation/E4.pattern6.tif: [testng] [2024-10-15 03:31:17,070] [pool-1-thread-7] Initializing /data/josiah/cell-Z34.C1.tiff: [testng] [2024-10-15 03:31:31,338] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-01.tiff: [testng] [2024-10-15 03:31:45,508] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0244.TIF: [testng] [2024-10-15 03:31:58,694] [pool-1-thread-2] Initializing /data/david/100umbeads_stack.tif: [testng] [2024-10-15 03:32:09,223] [pool-1-thread-6] Initializing /data/ascb/FND-24_GeorgeEPalade.tif: [testng] [2024-10-15 03:32:21,510] [pool-1-thread-11] Initializing /data/damian/damian.tif: [testng] [2024-10-15 03:32:47,753] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0246.TIF: [testng] [2024-10-15 03:33:32,246] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z002.tif: [testng] [2024-10-15 03:33:55,288] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z028.tif: [testng] [2024-10-15 03:34:09,381] [pool-1-thread-5] Initializing /data/brian/datamanager.tiff: [testng] [2024-10-15 03:34:21,075] [pool-1-thread-1] Initializing /data/qa-4968/twocars2.tif: [testng] [2024-10-15 03:34:30,768] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z051.tif: [testng] [2024-10-15 03:34:43,294] [pool-1-thread-12] Initializing /data/public/condensation/E4.pattern9.tif: [testng] 03:36:28,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:36:28,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:36:28,166 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-15_03-36-28.log] [testng] 03:36:28,167 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60781e90 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38266, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 125 minutes 14 seconds Finished: SUCCESS