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Started by upstream project "BIOFORMATS-test-repo" build number 221 originally caused by: Started by upstream project "Trigger" build number 248 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins3343839935444518128.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35066_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:20:54,926 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:20:54,928 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 02:20:54,928 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:20:54,929 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:20:54,929 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:20:54,929 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:20:54,930 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:20:54,930 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:20:54,930 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:20:54,931 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:20:54,931 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:20:54,931 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:20:55,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:20:55,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:20:55,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:20:55,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:20:55,124 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:20:55,124 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:20:55,124 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:20:55,124 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:20:55,124 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 02:20:55,125 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 02:20:55,125 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 195 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-15 02:20:55,134] [main] java.version = 11.0.16 [testng] 02:20:55,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:20:55,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:55,180 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-15_02-20-55.log] [testng] 02:20:55,182 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-10-15 02:20:55,184] [main] testng.directory = /data [testng] [2024-10-15 02:20:55,184] [main] testng.configDirectory = /config [testng] [2024-10-15 02:20:55,194] [main] testng.multiplier = 1.0 [testng] [2024-10-15 02:20:55,195] [main] testng.in-memory = false [testng] [2024-10-15 02:20:55,195] [main] testng.allow-missing = false [testng] [2024-10-15 02:20:55,195] [main] user.language = en [testng] [2024-10-15 02:20:55,195] [main] user.country = ${user.country} [testng] [2024-10-15 02:20:55,195] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-15 02:22:21,811] [main] ---------------------------------------- [testng] [2024-10-15 02:22:21,811] [main] Total files: 259 [testng] [2024-10-15 02:22:21,812] [main] Scan time: 86.615 s (334 ms/file) [testng] [2024-10-15 02:22:21,812] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-15 03:02:56,527] [pool-1-thread-1] Initializing /data/brian/CagedATP CaG7.oib: [testng] 03:02:56,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:02:56,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:02:56,530 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-15_03-02-56.log] [testng] 03:02:56,531 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50034a43 - End of configuration. [testng] [2024-10-15 03:02:58,614] [pool-1-thread-12] Initializing /data/aryeh/030408 2 1.oib: [testng] 03:02:58,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:02:58,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:02:58,615 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-15_03-02-58.log] [testng] 03:02:58,616 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e8e0760 - End of configuration. [testng] [2024-10-15 03:03:00,012] [pool-1-thread-11] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] 03:03:00,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:03:00,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:03:00,013 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-15_03-03-00.log] [testng] 03:03:00,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70b2b0fe - End of configuration. [testng] [2024-10-15 03:03:01,735] [pool-1-thread-10] Initializing /data/marc/V0606J.oib: [testng] 03:03:01,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:03:01,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:03:01,735 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-15_03-03-01.log] [testng] 03:03:01,736 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bb1b58e - End of configuration. [testng] [2024-10-15 03:03:05,763] [pool-1-thread-9] Initializing /data/johannes/step4.bmp: [testng] 03:03:05,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:03:05,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:03:05,764 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-15_03-03-05.log] [testng] 03:03:05,764 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d8f6 - End of configuration. [testng] [2024-10-15 03:03:06,569] [pool-1-thread-8] Initializing /data/karl/Image0009.oib: [testng] 03:03:06,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:03:06,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:03:06,570 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-15_03-03-06.log] [testng] 03:03:06,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@719feb65 - End of configuration. [testng] [2024-10-15 03:03:09,272] [pool-1-thread-7] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] 03:03:09,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:03:09,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:03:09,273 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-15_03-03-09.log] [testng] 03:03:09,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45fbce87 - End of configuration. [testng] [2024-10-15 03:03:11,801] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] 03:03:11,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:03:11,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:03:11,803 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-15_03-03-11.log] [testng] 03:03:11,803 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34c1597 - End of configuration. [testng] [2024-10-15 03:03:14,828] [pool-1-thread-5] Initializing /data/molly/11OCT2.OIF: [testng] 03:03:14,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:03:14,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:03:14,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-15_03-03-14.log] [testng] 03:03:14,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c5ecdb4 - End of configuration. [testng] [2024-10-15 03:05:33,298] [pool-1-thread-4] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] 03:05:33,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:05:33,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:05:33,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-15_03-05-33.log] [testng] 03:05:33,299 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f58a692 - End of configuration. [testng] [2024-10-15 03:05:37,819] [pool-1-thread-3] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] 03:05:37,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:05:37,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:05:37,820 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-15_03-05-37.log] [testng] 03:05:37,820 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45900233 - End of configuration. [testng] [2024-10-15 03:05:40,773] [pool-1-thread-2] Initializing /data/brian/Lambda10nm.oib: [testng] 03:05:40,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:05:40,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:05:40,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-15_03-05-40.log] [testng] 03:05:40,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4adee77c - End of configuration. [testng] [2024-10-15 03:05:52,829] [pool-1-thread-9] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-10-15 03:06:04,124] [pool-1-thread-2] Initializing /data/glen/simulstack.oif: [testng] [2024-10-15 03:06:24,710] [pool-1-thread-8] Initializing /data/molly/11OCT4.OIF: [testng] [2024-10-15 03:07:48,735] [pool-1-thread-1] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-10-15 03:07:53,509] [pool-1-thread-12] Initializing /data/glen/notsaturated.oib: [testng] [2024-10-15 03:07:57,499] [pool-1-thread-3] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-10-15 03:08:00,721] [pool-1-thread-7] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-10-15 03:08:04,176] [pool-1-thread-6] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-10-15 03:08:06,887] [pool-1-thread-11] Initializing /data/glen/simulstack.oib: [testng] [2024-10-15 03:08:10,313] [pool-1-thread-10] Initializing /data/david/Image0016.oif: [testng] [2024-10-15 03:08:28,331] [pool-1-thread-9] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-10-15 03:09:05,777] [pool-1-thread-1] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-10-15 03:09:10,384] [pool-1-thread-11] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-10-15 03:09:12,415] [pool-1-thread-3] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-10-15 03:09:15,394] [pool-1-thread-7] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-10-15 03:09:18,344] [pool-1-thread-6] Initializing /data/simon/used_to_work.oib: [testng] [2024-10-15 03:09:22,199] [pool-1-thread-12] Initializing /data/chris/missegragation-15.oib: [testng] [2024-10-15 03:09:41,506] [pool-1-thread-12] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-10-15 03:09:44,563] [pool-1-thread-3] Initializing /data/johannes/step5b.bmp: [testng] [2024-10-15 03:09:45,919] [pool-1-thread-6] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-10-15 03:09:48,844] [pool-1-thread-11] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-10-15 03:09:58,831] [pool-1-thread-1] Initializing /data/molly/11OCT9.OIF: [testng] [2024-10-15 03:12:42,954] [pool-1-thread-7] Initializing /data/molly/11OCT10.OIF: [testng] [2024-10-15 03:14:45,126] [pool-1-thread-4] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-10-15 03:15:00,357] [pool-1-thread-3] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-10-15 03:15:10,777] [pool-1-thread-6] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-10-15 03:15:19,692] [pool-1-thread-12] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-10-15 03:15:30,342] [pool-1-thread-3] Initializing /data/molly/11OCT3.OIF: [testng] [2024-10-15 03:23:07,271] [pool-1-thread-12] Initializing /data/molly/11OCT7.OIF: [testng] [2024-10-15 03:25:24,475] [pool-1-thread-10] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-10-15 03:35:43,778] [pool-1-thread-11] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-10-15 03:36:15,292] [pool-1-thread-6] Initializing /data/allan/62909#1.oib: [testng] [2024-10-15 03:36:20,716] [pool-1-thread-4] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-10-15 03:36:57,554] [pool-1-thread-11] Initializing /data/molly/11OCT5.OIF: [testng] [2024-10-15 03:38:59,293] [pool-1-thread-6] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-10-15 03:39:40,164] [pool-1-thread-6] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-10-15 03:56:02,394] [pool-1-thread-10] Initializing /data/tom/RGB-1.avi: [testng] [2024-10-15 03:56:21,587] [pool-1-thread-10] Initializing /data/glen/singleseqframe.oif: [testng] [2024-10-15 04:03:25,889] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-10-15 04:04:01,570] [pool-1-thread-10] Initializing /data/jae/Image0001.oib: [testng] [2024-10-15 04:04:40,963] [pool-1-thread-10] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-10-15 04:09:39,712] [pool-1-thread-10] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-10-15 04:10:14,906] [pool-1-thread-10] Initializing /data/glen/singlesimul.oif: [testng] [2024-10-15 04:16:32,751] [pool-1-thread-10] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-10-15 04:17:16,155] [pool-1-thread-10] Initializing /data/michael/CELL3.oib: [testng] [2024-10-15 04:17:50,644] [pool-1-thread-10] Initializing /data/simon/never_worked.oib: [testng] [2024-10-15 04:18:22,046] [pool-1-thread-10] Initializing /data/aryeh/control_test.oib: [testng] [2024-10-15 04:19:13,575] [pool-1-thread-10] Initializing /data/brian/lambda02nm.oib: [testng] [2024-10-15 04:19:45,881] [pool-1-thread-10] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-10-15 04:20:13,727] [pool-1-thread-10] Initializing /data/johannes/step1.bmp: [testng] [2024-10-15 04:20:26,354] [pool-1-thread-10] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-10-15 04:20:51,303] [pool-1-thread-10] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-10-15 04:21:16,623] [pool-1-thread-10] Initializing /data/yoshihito/XY.oif: [testng] [2024-10-15 04:23:59,216] [pool-1-thread-10] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-10-15 04:24:39,478] [pool-1-thread-10] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-10-15 04:41:54,063] [pool-1-thread-2] Initializing /data/glen/111407.oif: [testng] 04:50:10,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:50:10,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:50:10,602 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-15_04-50-10.log] [testng] 04:50:10,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35b5aff1 - End of configuration. [testng] [2024-10-15 04:55:34,072] [pool-1-thread-8] Initializing /data/brian/FLIP.oib: [testng] [2024-10-15 04:55:49,051] [pool-1-thread-8] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-10-15 04:56:05,790] [pool-1-thread-8] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-10-15 04:56:16,778] [pool-1-thread-8] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-10-15 04:56:28,416] [pool-1-thread-8] Initializing /data/glen/Null file/test change.oif: [testng] [2024-10-15 04:56:38,547] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-10-15 04:56:52,338] [pool-1-thread-4] Initializing /data/molly/11OCT8.OIF: [testng] 04:57:39,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:57:39,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:57:39,332 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-15_04-57-39.log] [testng] 04:57:39,332 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47f6dbbe - End of configuration. [testng] [2024-10-15 04:58:37,320] [pool-1-thread-8] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-10-15 04:58:50,450] [pool-1-thread-8] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-10-15 04:59:00,151] [pool-1-thread-8] Initializing /data/molly/11OCT6.OIF: [testng] 05:00:38,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:00:38,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:38,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-15_05-00-38.log] [testng] 05:00:38,498 |-INFO in ch.qos.logback.core.sift.SiftProcessor@518eb6a7 - End of configuration. [testng] [2024-10-15 05:01:21,841] [pool-1-thread-10] Initializing /data/glen/singlesimul.oib: [testng] [2024-10-15 05:01:29,955] [pool-1-thread-10] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-10-15 05:02:09,373] [pool-1-thread-10] Initializing /data/christian/20min.oif: [testng] [2024-10-15 05:02:47,165] [pool-1-thread-10] Initializing /data/marc/V0606L.oib: [testng] [2024-10-15 05:02:50,968] [pool-1-thread-12] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-10-15 05:03:12,554] [pool-1-thread-10] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-10-15 05:04:11,129] [pool-1-thread-10] Initializing /data/johannes/step4b.bmp: [testng] [2024-10-15 05:04:14,976] [pool-1-thread-10] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-10-15 05:04:22,650] [pool-1-thread-10] Initializing /data/aryeh/1h.oib: [testng] [2024-10-15 05:04:34,796] [pool-1-thread-10] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-10-15 05:04:44,383] [pool-1-thread-10] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-10-15 05:06:31,636] [pool-1-thread-9] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-10-15 05:06:34,486] [pool-1-thread-9] Initializing /data/david/Image0016.oib: [testng] [2024-10-15 05:06:43,077] [pool-1-thread-9] Initializing /data/monica/Image0056.oif: [testng] [2024-10-15 05:07:08,824] [pool-1-thread-11] Initializing /data/glen/Image0002.oif: [testng] [2024-10-15 05:08:05,327] [pool-1-thread-9] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-10-15 05:08:13,526] [pool-1-thread-9] Initializing /data/yasunori/series_1.oib: [testng] [2024-10-15 05:08:21,312] [pool-1-thread-9] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-10-15 05:08:47,996] [pool-1-thread-9] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-10-15 05:08:56,225] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-10-15 05:09:05,418] [pool-1-thread-9] Initializing /data/johannes/step3.bmp: [testng] [2024-10-15 05:09:09,337] [pool-1-thread-9] Initializing /data/satoshi/60x_5x_1.oif: [testng] 05:09:49,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:09:49,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:09:49,840 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-15_05-09-49.log] [testng] 05:09:49,841 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e172c69 - End of configuration. [testng] [2024-10-15 05:13:59,194] [pool-1-thread-2] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-10-15 05:14:04,820] [pool-1-thread-2] Initializing /data/kay/IM2pg.oib: [testng] [2024-10-15 05:14:12,711] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-10-15 05:14:19,762] [pool-1-thread-2] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-10-15 05:14:23,299] [pool-1-thread-7] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-10-15 05:14:26,799] [pool-1-thread-2] Initializing /data/glen/4205basal106072.oif: [testng] [2024-10-15 05:14:40,615] [pool-1-thread-7] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-10-15 05:14:59,352] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-10-15 05:15:08,853] [pool-1-thread-9] Initializing /data/glen/seqlinestack.oif: [testng] [2024-10-15 05:16:26,235] [pool-1-thread-12] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-10-15 05:16:32,581] [pool-1-thread-12] Initializing /data/glen/singleseqframe.oib: [testng] [2024-10-15 05:16:38,163] [pool-1-thread-12] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-10-15 05:16:45,949] [pool-1-thread-12] Initializing /data/pedro/plv-test.oib: [testng] [2024-10-15 05:16:51,996] [pool-1-thread-12] Initializing /data/glen/LUT issue/60x11.oif: [testng] 05:18:48,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:18:48,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:18:48,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-15_05-18-48.log] [testng] 05:18:48,942 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f8ac000 - End of configuration. [testng] [2024-10-15 05:22:59,962] [pool-1-thread-10] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] 05:23:19,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:23:19,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:23:19,578 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-15_05-23-19.log] [testng] 05:23:19,578 |-INFO in ch.qos.logback.core.sift.SiftProcessor@697cbd06 - End of configuration. [testng] [2024-10-15 05:26:35,362] [pool-1-thread-5] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-10-15 05:26:43,139] [pool-1-thread-5] Initializing /data/yoshihito/XY.oib: [testng] [2024-10-15 05:26:50,186] [pool-1-thread-5] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-10-15 05:26:59,099] [pool-1-thread-5] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-10-15 05:27:13,601] [pool-1-thread-5] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-10-15 05:27:21,282] [pool-1-thread-5] Initializing /data/glen/seqlinestack.oib: [testng] [2024-10-15 05:27:31,689] [pool-1-thread-5] Initializing /data/sten/01.oib: [testng] [2024-10-15 05:27:42,038] [pool-1-thread-5] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-10-15 05:27:50,972] [pool-1-thread-5] Initializing /data/johannes/step2.bmp: [testng] [2024-10-15 05:27:55,755] [pool-1-thread-5] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-10-15 05:32:13,927] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-10-15 05:32:21,245] [pool-1-thread-1] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-10-15 05:32:27,753] [pool-1-thread-1] Initializing /data/glen/Null file/test no change.oif: [testng] [2024-10-15 05:33:12,524] [pool-1-thread-1] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-10-15 05:33:19,077] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-10-15 05:33:26,779] [pool-1-thread-1] Initializing /data/glen/singleseqline.oib: [testng] [2024-10-15 05:33:32,493] [pool-1-thread-4] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-10-15 05:33:33,521] [pool-1-thread-1] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-10-15 05:33:40,047] [pool-1-thread-4] Initializing /data/glen/singleseqline.oif: [testng] [2024-10-15 05:33:41,612] [pool-1-thread-1] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-10-15 05:34:24,306] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-10-15 05:34:31,608] [pool-1-thread-11] Initializing /data/molly/11OCT11.OIF: [testng] [2024-10-15 05:35:06,819] [pool-1-thread-4] Initializing /data/brian/Kaede15.oib: [testng] [2024-10-15 05:35:07,965] [pool-1-thread-1] Initializing /data/tom/zseries-test.oib: [testng] [2024-10-15 05:35:16,878] [pool-1-thread-4] Initializing /data/glen/notsaturated.oif: [testng] [2024-10-15 05:35:22,594] [pool-1-thread-1] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-10-15 05:35:29,953] [pool-1-thread-1] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-10-15 05:35:32,131] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-10-15 05:35:39,659] [pool-1-thread-1] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] 06:30:53,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:30:53,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:30:53,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-15_06-30-53.log] [testng] 06:30:53,096 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fca9e7d - End of configuration. [testng] 06:42:01,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:42:01,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:42:01,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-15_06-42-01.log] [testng] 06:42:01,475 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e2e7feb - End of configuration. time="2024-10-15T06:00:36Z" level=error msg="error waiting for container: unexpected EOF" Build step 'Execute shell' marked build as failure Finished: FAILURE