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Started by upstream project "BIOFORMATS-test-repo" build number 221 originally caused by: Started by upstream project "Trigger" build number 248 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins1101198323873181265.sh + '[' ultraview = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35115_merge_ci -v /uod/idr/repos/curated/ultraview:/data -v /uod/idr-scratch/merge-ci/curated/ultraview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 05:36:51,360 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 05:36:51,362 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 05:36:51,362 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:36:51,363 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:36:51,363 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:36:51,364 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:36:51,364 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:36:51,364 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:36:51,364 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:36:51,365 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:36:51,365 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:36:51,366 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:36:51,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:36:51,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:36:51,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:36:51,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:36:51,572 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:36:51,572 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:36:51,572 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:36:51,573 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:36:51,573 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 05:36:51,574 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 05:36:51,574 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 210 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-15 05:36:51,583] [main] java.version = 11.0.16 [testng] 05:36:51,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:36:51,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:36:51,630 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-15_05-36-51.log] [testng] 05:36:51,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-10-15 05:36:51,633] [main] testng.directory = /data [testng] [2024-10-15 05:36:51,634] [main] testng.configDirectory = /config [testng] [2024-10-15 05:36:51,644] [main] testng.multiplier = 1.0 [testng] [2024-10-15 05:36:51,645] [main] testng.in-memory = false [testng] [2024-10-15 05:36:51,645] [main] testng.allow-missing = false [testng] [2024-10-15 05:36:51,645] [main] user.language = en [testng] [2024-10-15 05:36:51,645] [main] user.country = ${user.country} [testng] [2024-10-15 05:36:51,645] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-15 05:38:19,608] [main] ---------------------------------------- [testng] [2024-10-15 05:38:19,609] [main] Total files: 19 [testng] [2024-10-15 05:38:19,609] [main] Scan time: 87.962 s (4629 ms/file) [testng] [2024-10-15 05:38:19,609] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-15 05:39:00,568] [pool-1-thread-1] Initializing /data/chad/UltraViewExamples/Bug/CHAD200820080724120123.HTM: [testng] 05:39:00,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:39:00,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:39:00,571 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-15_05-39-00.log] [testng] 05:39:00,571 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54ae3410 - End of configuration. [testng] [2024-10-15 05:39:01,548] [pool-1-thread-12] Initializing /data/chad/DIC/EZRA200820080626102637.HTM: [testng] 05:39:01,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:39:01,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:39:01,549 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-15_05-39-01.log] [testng] 05:39:01,550 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20cb239 - End of configuration. [testng] [2024-10-15 05:39:02,539] [pool-1-thread-11] Initializing /data/kate/GreenRedNoZ3T/GreenRedNoZ5T.htm: [testng] 05:39:02,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:39:02,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:39:02,540 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-15_05-39-02.log] [testng] 05:39:02,541 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b4efa30 - End of configuration. [testng] [2024-10-15 05:39:03,798] [pool-1-thread-10] Initializing /data/kate/GreenRedNoZnoT/GreenRedNoZNoT.htm: [testng] 05:39:03,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:39:03,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:39:03,799 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-15_05-39-03.log] [testng] 05:39:03,799 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e1bf021 - End of configuration. [testng] [2024-10-15 05:39:05,977] [pool-1-thread-9] Initializing /data/chad/UltraViewExample/doesNot/CHAD200920090331181253.HTM: [testng] 05:39:05,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:39:05,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:39:05,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-15_05-39-05.log] [testng] 05:39:05,979 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32bacb60 - End of configuration. [testng] [2024-10-15 05:39:07,070] [pool-1-thread-8] Initializing /data/helio/2 copy Cnn g-tubGFP 111221#20/2 copy Cnn g-tubGFP 111221#20.htm: [testng] 05:39:07,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:39:07,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:39:07,071 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-15_05-39-07.log] [testng] 05:39:07,072 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7278c9a5 - End of configuration. [testng] [2024-10-15 05:39:07,981] [pool-1-thread-7] Initializing /data/kate/Neutrophils#18/Neutrophils#18.htm: [testng] 05:39:07,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:39:07,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:39:07,981 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-15_05-39-07.log] [testng] 05:39:07,982 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79170391 - End of configuration. [testng] [2024-10-15 05:39:08,993] [pool-1-thread-6] Initializing /data/chad/UltraViewExamples/DIC_200820080724115245/CHAD200820080724115245.HTM: [testng] 05:39:08,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:39:08,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:39:08,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-15_05-39-08.log] [testng] 05:39:08,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59e7a2e6 - End of configuration. [testng] [2024-10-15 05:39:10,338] [pool-1-thread-5] Initializing /data/chad/20080107130850/IREN200820080107130850.HTM: [testng] 05:39:10,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:39:10,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:39:10,339 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-15_05-39-10.log] [testng] 05:39:10,339 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7230887c - End of configuration. [testng] [2024-10-15 05:39:11,540] [pool-1-thread-4] Initializing /data/chad/UltraViewSamples/series 3/RAJE200820080619090142.HTM: [testng] 05:39:11,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:39:11,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:39:11,541 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-15_05-39-11.log] [testng] 05:39:11,541 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12b9e56c - End of configuration. [testng] [2024-10-15 05:39:12,507] [pool-1-thread-3] Initializing /data/kate/GreenOnlyNoZnoT/GreenOnlyNoZnoT.htm: [testng] 05:39:12,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:39:12,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:39:12,508 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-15_05-39-12.log] [testng] 05:39:12,509 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69982740 - End of configuration. [testng] [2024-10-15 05:39:13,413] [pool-1-thread-2] Initializing /data/kate/Neutrophils#18/tiffs/Neutrophils#18.htm: [testng] 05:39:13,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:39:13,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:39:13,414 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-15_05-39-13.log] [testng] 05:39:13,414 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4621136a - End of configuration. [testng] [2024-10-15 05:39:47,050] [pool-1-thread-6] Initializing /data/kate/GreenRed6ZnoT/GreenRed5ZNoT.htm: [testng] [2024-10-15 05:39:48,341] [pool-1-thread-12] Initializing /data/chad/UltraViewExample/works/CHAD200920090331181355.HTM: [testng] [2024-10-15 05:40:00,017] [pool-1-thread-3] Initializing /data/kate/GreenRed6Z3T/GreenRed5Z5T.htm: [testng] [2024-10-15 05:40:07,795] [pool-1-thread-10] Initializing /data/chad/UltraViewExamples/Works/CHAD200820080724121453.HTM: [testng] [2024-10-15 05:40:25,900] [pool-1-thread-11] Initializing /data/todd/movement-1.htm: [testng] [2024-10-15 05:41:09,170] [pool-1-thread-1] Initializing /data/chad/DIC_IREN200820080107120042/IREN200820080107120042.HTM: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 44 minutes 54 seconds Finished: SUCCESS