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Started by upstream project "BIOFORMATS-test-repo" build number 222 originally caused by: Started by upstream project "Trigger" build number 249 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins2693987337218109935.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35204_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:26:39,401 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:26:39,402 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 01:26:39,402 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:26:39,403 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:26:39,403 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:26:39,404 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:26:39,404 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:26:39,404 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:26:39,404 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:26:39,405 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:26:39,405 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:26:39,405 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:26:39,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:26:39,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:26:39,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:26:39,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:26:39,594 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:26:39,594 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:26:39,594 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:26:39,595 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:26:39,595 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 01:26:39,596 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 01:26:39,596 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 192 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-16 01:26:39,604] [main] java.version = 17.0.2 [testng] 01:26:39,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:26:39,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:39,646 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-16_01-26-39.log] [testng] 01:26:39,647 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-16 01:26:39,649] [main] testng.directory = /data [testng] [2024-10-16 01:26:39,649] [main] testng.configDirectory = /config [testng] [2024-10-16 01:26:39,658] [main] testng.multiplier = 1.0 [testng] [2024-10-16 01:26:39,658] [main] testng.in-memory = false [testng] [2024-10-16 01:26:39,658] [main] testng.allow-missing = false [testng] [2024-10-16 01:26:39,658] [main] user.language = en [testng] [2024-10-16 01:26:39,659] [main] user.country = ${user.country} [testng] [2024-10-16 01:26:39,659] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-16 01:28:11,930] [main] ---------------------------------------- [testng] [2024-10-16 01:28:11,930] [main] Total files: 21 [testng] [2024-10-16 01:28:11,930] [main] Scan time: 92.271 s (4393 ms/file) [testng] [2024-10-16 01:28:11,930] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-16 01:30:03,784] [pool-1-thread-1] Initializing /data/stefan/001_q04.txt: [testng] 01:30:03,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:30:03,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:03,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-16_01-30-03.log] [testng] 01:30:03,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b34c96b - End of configuration. [testng] [2024-10-16 01:30:10,392] [pool-1-thread-12] Initializing /data/stefan/001_q18.txt: [testng] 01:30:10,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:30:10,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:10,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-16_01-30-10.log] [testng] 01:30:10,394 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b8b793a - End of configuration. [testng] [2024-10-16 01:30:21,002] [pool-1-thread-11] Initializing /data/stefan/001_q10.txt: [testng] 01:30:21,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:30:21,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:21,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-16_01-30-21.log] [testng] 01:30:21,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f6b72c6 - End of configuration. [testng] [2024-10-16 01:30:35,908] [pool-1-thread-10] Initializing /data/stefan/001_q01.txt: [testng] 01:30:35,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:30:35,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:35,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-16_01-30-35.log] [testng] 01:30:35,909 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b8ebd3b - End of configuration. [testng] [2024-10-16 01:30:46,771] [pool-1-thread-9] Initializing /data/stefan/001_q15.txt: [testng] 01:30:46,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:30:46,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:46,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-16_01-30-46.log] [testng] 01:30:46,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3473735b - End of configuration. [testng] [2024-10-16 01:30:58,758] [pool-1-thread-8] Initializing /data/stefan/001_q13.txt: [testng] 01:30:58,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:30:58,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:58,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-16_01-30-58.log] [testng] 01:30:58,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e83968a - End of configuration. [testng] [2024-10-16 01:31:05,720] [pool-1-thread-7] Initializing /data/stefan/001_q09.txt: [testng] 01:31:05,721 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:31:05,721 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:05,721 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-16_01-31-05.log] [testng] 01:31:05,722 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b9c822d - End of configuration. [testng] [2024-10-16 01:31:23,490] [pool-1-thread-6] Initializing /data/stefan/001_q06.txt: [testng] 01:31:23,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:31:23,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:23,491 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-16_01-31-23.log] [testng] 01:31:23,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45fe39f3 - End of configuration. [testng] [2024-10-16 01:31:28,885] [pool-1-thread-5] Initializing /data/stefan/001_q12.txt: [testng] 01:31:28,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:31:28,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:28,886 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-16_01-31-28.log] [testng] 01:31:28,886 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74acbb2d - End of configuration. [testng] [2024-10-16 01:31:36,554] [pool-1-thread-4] Initializing /data/stefan/001_q17.txt: [testng] 01:31:36,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:31:36,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:36,555 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-16_01-31-36.log] [testng] 01:31:36,556 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3db161ea - End of configuration. [testng] [2024-10-16 01:31:40,161] [pool-1-thread-3] Initializing /data/stefan/001_q14.txt: [testng] 01:31:40,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:31:40,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:40,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-16_01-31-40.log] [testng] 01:31:40,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fb5bf1 - End of configuration. [testng] [2024-10-16 01:31:43,929] [pool-1-thread-2] Initializing /data/stefan/001_q11.txt: [testng] 01:31:43,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:31:43,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:43,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-16_01-31-43.log] [testng] 01:31:43,930 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e65ca21 - End of configuration. [testng] [2024-10-16 01:33:08,011] [pool-1-thread-10] Initializing /data/stefan/001_q05.txt: [testng] [2024-10-16 01:33:15,627] [pool-1-thread-1] Initializing /data/stefan/001_q16.txt: [testng] [2024-10-16 01:33:23,292] [pool-1-thread-6] Initializing /data/stefan/001_q03.txt: [testng] [2024-10-16 01:33:32,487] [pool-1-thread-12] Initializing /data/stefan/001_q08.txt: [testng] [2024-10-16 01:33:46,255] [pool-1-thread-4] Initializing /data/stefan/001_q07.txt: [testng] [2024-10-16 01:33:53,749] [pool-1-thread-8] Initializing /data/stefan/001_q02.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 minutes 31 seconds Finished: SUCCESS