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Started by upstream project "BIOFORMATS-test-repo" build number 222 originally caused by: Started by upstream project "Trigger" build number 249 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins8309448991024045354.sh + '[' targa = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35226_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:56:17,283 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:56:17,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 02:56:17,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:56:17,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:56:17,286 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:56:17,286 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:56:17,286 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:56:17,286 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:56:17,287 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:56:17,287 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:56:17,288 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:56:17,288 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:56:17,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:56:17,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:56:17,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:56:17,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:56:17,468 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:56:17,468 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:56:17,468 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:56:17,468 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:56:17,469 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 02:56:17,469 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 02:56:17,469 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 182 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-16 02:56:17,478] [main] java.version = 17.0.2 [testng] 02:56:17,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:56:17,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:56:17,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-16_02-56-17.log] [testng] 02:56:17,519 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-16 02:56:17,521] [main] testng.directory = /data [testng] [2024-10-16 02:56:17,521] [main] testng.configDirectory = /config [testng] [2024-10-16 02:56:17,530] [main] testng.multiplier = 1.0 [testng] [2024-10-16 02:56:17,531] [main] testng.in-memory = false [testng] [2024-10-16 02:56:17,531] [main] testng.allow-missing = false [testng] [2024-10-16 02:56:17,531] [main] user.language = en [testng] [2024-10-16 02:56:17,531] [main] user.country = ${user.country} [testng] [2024-10-16 02:56:17,531] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-16 02:56:18,180] [main] ---------------------------------------- [testng] [2024-10-16 02:56:18,180] [main] Total files: 21 [testng] [2024-10-16 02:56:18,181] [main] Scan time: 0.649 s (30 ms/file) [testng] [2024-10-16 02:56:18,181] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-16 02:58:05,048] [pool-1-thread-1] Initializing /data/samples/CCM8.TGA: [testng] 02:58:05,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:58:05,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:58:05,050 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-16_02-58-05.log] [testng] 02:58:05,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c50f48c - End of configuration. [testng] [2024-10-16 02:58:09,853] [pool-1-thread-12] Initializing /data/samples/FLAG_T16.TGA: [testng] 02:58:09,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:58:09,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:58:09,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-16_02-58-09.log] [testng] 02:58:09,854 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11bee2d3 - End of configuration. [testng] [2024-10-16 02:58:14,240] [pool-1-thread-11] Initializing /data/samples/CTC24.TGA: [testng] 02:58:14,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:58:14,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:58:14,241 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-16_02-58-14.log] [testng] 02:58:14,242 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12005cf6 - End of configuration. [testng] [2024-10-16 02:58:18,396] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA: [testng] 02:58:18,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:58:18,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:58:18,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-16_02-58-18.log] [testng] 02:58:18,398 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ac61b6d - End of configuration. [testng] [2024-10-16 02:58:22,450] [pool-1-thread-9] Initializing /data/samples/UTC24.TGA: [testng] 02:58:22,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:58:22,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:58:22,451 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-16_02-58-22.log] [testng] 02:58:22,451 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15030baa - End of configuration. [testng] [2024-10-16 02:58:26,602] [pool-1-thread-8] Initializing /data/samples/XING_B32.TGA: [testng] 02:58:26,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:58:26,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:58:26,603 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-16_02-58-26.log] [testng] 02:58:26,603 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39b78610 - End of configuration. [testng] [2024-10-16 02:58:32,291] [pool-1-thread-7] Initializing /data/samples/UTC32.TGA: [testng] 02:58:32,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:58:32,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:58:32,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-16_02-58-32.log] [testng] 02:58:32,293 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46d7d68b - End of configuration. [testng] [2024-10-16 02:58:39,665] [pool-1-thread-6] Initializing /data/samples/UCM8.TGA: [testng] 02:58:39,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:58:39,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:58:39,666 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-16_02-58-39.log] [testng] 02:58:39,666 |-INFO in ch.qos.logback.core.sift.SiftProcessor@249c208d - End of configuration. [testng] [2024-10-16 02:58:46,499] [pool-1-thread-5] Initializing /data/samples/UBW8.TGA: [testng] 02:58:46,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:58:46,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:58:46,500 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-16_02-58-46.log] [testng] 02:58:46,500 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d259ec5 - End of configuration. [testng] [2024-10-16 02:58:52,602] [pool-1-thread-4] Initializing /data/samples/XING_T24.TGA: [testng] 02:58:52,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:58:52,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:58:52,604 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-16_02-58-52.log] [testng] 02:58:52,604 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b790ac5 - End of configuration. [testng] [2024-10-16 02:58:58,467] [pool-1-thread-3] Initializing /data/samples/FLAG_B32.TGA: [testng] 02:58:58,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:58:58,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:58:58,468 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-16_02-58-58.log] [testng] 02:58:58,468 |-INFO in ch.qos.logback.core.sift.SiftProcessor@220a3cb6 - End of configuration. [testng] [2024-10-16 02:59:04,810] [pool-1-thread-2] Initializing /data/samples/FLAG_T32.TGA: [testng] 02:59:04,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:59:04,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:59:04,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-16_02-59-04.log] [testng] 02:59:04,811 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7655bcc9 - End of configuration. [testng] [2024-10-16 02:59:48,110] [pool-1-thread-12] Initializing /data/samples/CBW8.TGA: [testng] [2024-10-16 02:59:53,837] [pool-1-thread-9] Initializing /data/samples/CTC16.TGA: [testng] [2024-10-16 03:00:00,103] [pool-1-thread-7] Initializing /data/samples/FLAG_B24.TGA: [testng] [2024-10-16 03:00:06,837] [pool-1-thread-5] Initializing /data/samples/FLAG_B16.TGA: [testng] [2024-10-16 03:00:14,563] [pool-1-thread-3] Initializing /data/samples/UTC16.TGA: [testng] [2024-10-16 03:00:21,136] [pool-1-thread-11] Initializing /data/samples/XING_B24.TGA: [testng] [2024-10-16 03:00:26,367] [pool-1-thread-10] Initializing /data/samples/MARBLES.TGA: [testng] [2024-10-16 03:00:31,830] [pool-1-thread-8] Initializing /data/samples/XING_T32.TGA: [testng] [2024-10-16 03:00:37,023] [pool-1-thread-4] Initializing /data/samples/XING_B16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 5 minutes 9 seconds Finished: SUCCESS