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Started by upstream project "BIOFORMATS-test-repo" build number 27 originally caused by: Started by upstream project "Trigger" build number 30 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins6477138157386877366.sh + '[' mng = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_3524_merge_ci -v /uod/idr/repos/curated/mng:/data -v /uod/idr-scratch/merge-ci/curated/mng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:17:09,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:17:09,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:17:09,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:17:09,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:17:09,345 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:17:09,345 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:17:09,345 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:17:09,346 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:17:09,346 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:17:09,348 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:17:09,348 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 419 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-08 02:17:09,360] [main] java.version = 1.8.0_342 [testng] 02:17:09,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:17:09,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:09,436 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-08_02-17-09.log] [testng] 02:17:09,438 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-08 02:17:09,441] [main] testng.directory = /data [testng] [2024-04-08 02:17:09,441] [main] testng.configDirectory = /config [testng] [2024-04-08 02:17:09,458] [main] testng.multiplier = 1.0 [testng] [2024-04-08 02:17:09,458] [main] testng.in-memory = false [testng] [2024-04-08 02:17:09,458] [main] testng.allow-missing = false [testng] [2024-04-08 02:17:09,458] [main] user.language = fr [testng] [2024-04-08 02:17:09,458] [main] user.country = FR [testng] [2024-04-08 02:17:09,459] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-08 02:17:10,776] [main] ---------------------------------------- [testng] [2024-04-08 02:17:10,776] [main] Total files: 78 [testng] [2024-04-08 02:17:10,776] [main] Scan time: 1.317 s (16 ms/file) [testng] [2024-04-08 02:17:10,776] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 78 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-08 02:17:24,929] [pool-1-thread-1] Initializing /data/images/MNGPAST16a.mng: [testng] 02:17:24,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:17:24,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:24,931 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-08_02-17-24.log] [testng] 02:17:24,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ebe4430 - End of configuration. [testng] [2024-04-08 02:17:24,977] [pool-1-thread-12] Initializing /data/images/png/MNGPAST-eightA.png: [testng] 02:17:24,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:17:24,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:24,978 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-08_02-17-24.log] [testng] 02:17:24,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d52460d - End of configuration. [testng] [2024-04-08 02:17:24,982] [pool-1-thread-11] Initializing /data/images/Delta-gray16.mng: [testng] 02:17:24,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:17:24,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:24,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-08_02-17-24.log] [testng] 02:17:24,983 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5137d083 - End of configuration. [testng] [2024-04-08 02:17:24,998] [pool-1-thread-10] Initializing /data/images/MNGTERM1.mng: [testng] 02:17:24,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:17:24,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:24,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-08_02-17-24.log] [testng] 02:17:24,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@680571f0 - End of configuration. [testng] [2024-04-08 02:17:25,012] [pool-1-thread-9] Initializing /data/images/PNGCH-CC.mng: [testng] 02:17:25,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:17:25,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:25,013 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-08_02-17-25.log] [testng] 02:17:25,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49630c07 - End of configuration. [testng] [2024-04-08 02:17:25,025] [pool-1-thread-8] Initializing /data/images/MNGTERM3-5.mng: [testng] 02:17:25,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:17:25,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:25,026 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-08_02-17-25.log] [testng] 02:17:25,026 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65c16e2d - End of configuration. [testng] [2024-04-08 02:17:25,040] [pool-1-thread-7] Initializing /data/images/PNGSxxxx.mng: [testng] 02:17:25,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:17:25,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:25,041 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-08_02-17-25.log] [testng] 02:17:25,042 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d9886ba - End of configuration. [testng] [2024-04-08 02:17:25,071] [pool-1-thread-6] Initializing /data/images/Waves1.mng: [testng] 02:17:25,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:17:25,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:25,072 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-08_02-17-25.log] [testng] 02:17:25,072 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bb006c - End of configuration. [testng] [2024-04-08 02:17:25,079] [pool-1-thread-5] Initializing /data/images/Delta-gray2.mng: [testng] 02:17:25,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:17:25,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:25,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-08_02-17-25.log] [testng] 02:17:25,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66f8ec40 - End of configuration. [testng] [2024-04-08 02:17:25,094] [pool-1-thread-4] Initializing /data/images/scrollOne.mng: [testng] 02:17:25,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:17:25,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:25,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-08_02-17-25.log] [testng] 02:17:25,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39355df8 - End of configuration. [testng] [2024-04-08 02:17:25,104] [pool-1-thread-3] Initializing /data/images/PNGBASxx.mng: [testng] 02:17:25,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:17:25,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:25,105 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-08_02-17-25.log] [testng] 02:17:25,105 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e457c7f - End of configuration. [testng] [2024-04-08 02:17:25,127] [pool-1-thread-2] Initializing /data/images/Delta-rgb16.mng: [testng] 02:17:25,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:17:25,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:25,128 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-08_02-17-25.log] [testng] 02:17:25,128 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dab29cc - End of configuration. [testng] [2024-04-08 02:17:26,453] [pool-1-thread-12] Initializing /data/images/Delta-gray-a8b.mng: [testng] [2024-04-08 02:17:26,477] [pool-1-thread-1] Initializing /data/images/png/Delta-gray-aEightW.png: [testng] [2024-04-08 02:17:26,481] [pool-1-thread-10] Initializing /data/images/MNGTERM3-2.mng: [testng] [2024-04-08 02:17:26,496] [pool-1-thread-6] Initializing /data/images/Delta-gray1.mng: [testng] [2024-04-08 02:17:26,514] [pool-1-thread-2] Initializing /data/images/Delta-rgb-a16w.mng: [testng] [2024-04-08 02:17:26,539] [pool-1-thread-8] Initializing /data/images/Waves3.mng: [testng] [2024-04-08 02:17:26,550] [pool-1-thread-11] Initializing /data/images/png/MNGPAST16b.png: [testng] [2024-04-08 02:17:26,553] [pool-1-thread-4] Initializing /data/images/png/MNGPAST16a.png: [testng] [2024-04-08 02:17:26,555] [pool-1-thread-9] Initializing /data/images/MNGTERM3-3.mng: [testng] [2024-04-08 02:17:26,566] [pool-1-thread-5] Initializing /data/roger/Well D2_01.mng: [testng] [2024-04-08 02:17:29,087] [pool-1-thread-3] Initializing /data/images/png/Delta-grayEight.png: [testng] [2024-04-08 02:17:29,090] [pool-1-thread-7] Initializing /data/images/png/Delta-gray-a16b.png: [testng] [2024-04-08 02:17:29,391] [pool-1-thread-3] Initializing /data/images/scrollThree.mng: [testng] [2024-04-08 02:17:29,405] [pool-1-thread-1] Initializing /data/images/DUTCH-two.mng: [testng] [2024-04-08 02:17:29,436] [pool-1-thread-11] Initializing /data/images/PNGCMSPx.mng: [testng] [2024-04-08 02:17:29,463] [pool-1-thread-4] Initializing /data/images/png/PROM-repl.png: [testng] [2024-04-08 02:17:29,494] [pool-1-thread-7] Initializing /data/images/MNGTERM2.mng: [testng] [2024-04-08 02:17:29,538] [pool-1-thread-8] Initializing /data/roger/Well B3_01.mng: [testng] [2024-04-08 02:17:32,045] [pool-1-thread-9] Initializing /data/images/png/MNGPAST-eightB.png: [testng] [2024-04-08 02:17:32,048] [pool-1-thread-10] Initializing /data/images/png/PROM-zfil.png: [testng] [2024-04-08 02:17:32,068] [pool-1-thread-6] Initializing /data/images/Delta-gray-a8w.mng: [testng] [2024-04-08 02:17:32,156] [pool-1-thread-12] Initializing /data/images/PROM-BASN-repl.mng: [testng] [2024-04-08 02:17:32,172] [pool-1-thread-1] Initializing /data/images/png/Delta-grayOne.png: [testng] [2024-04-08 02:17:32,174] [pool-1-thread-2] Initializing /data/images/png/Delta-gray-aEightB.png: [testng] [2024-04-08 02:17:32,317] [pool-1-thread-9] Initializing /data/images/Delta-rgb-a16b.mng: [testng] [2024-04-08 02:17:32,339] [pool-1-thread-4] Initializing /data/images/MNGTERM3-4.mng: [testng] [2024-04-08 02:17:32,354] [pool-1-thread-3] Initializing /data/roger/Well C4_01.mng: [testng] [2024-04-08 02:17:34,935] [pool-1-thread-7] Initializing /data/images/png/Delta-rgb-a16w.png: [testng] [2024-04-08 02:17:35,002] [pool-1-thread-1] Initializing /data/images/PNGGxxxx.mng: [testng] [2024-04-08 02:17:35,062] [pool-1-thread-11] Initializing /data/images/Waves2.mng: [testng] [2024-04-08 02:17:35,069] [pool-1-thread-2] Initializing /data/images/png/Delta-rgb-a16b.png: [testng] [2024-04-08 02:17:35,079] [pool-1-thread-10] Initializing /data/images/I01SCRL.mng: [testng] [2024-04-08 02:17:35,124] [pool-1-thread-7] Initializing /data/images/MNGPAST_eightB.mng: [testng] [2024-04-08 02:17:35,163] [pool-1-thread-4] Initializing /data/images/australia1.mng: [testng] [2024-04-08 02:17:35,180] [pool-1-thread-6] Initializing /data/images/MNGTERM3-7.mng: [testng] [2024-04-08 02:17:35,199] [pool-1-thread-12] Initializing /data/images/PROM-BASI-zfil.mng: [testng] [2024-04-08 02:17:35,255] [pool-1-thread-2] Initializing /data/images/png/Delta-grayFour.png: [testng] [2024-04-08 02:17:35,258] [pool-1-thread-9] Initializing /data/images/Delta-gray8.mng: [testng] [2024-04-08 02:17:35,292] [pool-1-thread-11] Initializing /data/images/MNGTERM3-1.mng: [testng] [2024-04-08 02:17:35,316] [pool-1-thread-10] Initializing /data/images/home.mng: [testng] [2024-04-08 02:17:35,374] [pool-1-thread-2] Initializing /data/images/MNGPAST_eightA.mng: [testng] [2024-04-08 02:17:35,398] [pool-1-thread-7] Initializing /data/images/png/Delta-rgb-aEightW.png: [testng] [2024-04-08 02:17:35,401] [pool-1-thread-1] Initializing /data/images/png/Delta-graySixteen.png: [testng] [2024-04-08 02:17:35,467] [pool-1-thread-6] Initializing /data/images/png/Delta-rgb16.png: [testng] [2024-04-08 02:17:35,515] [pool-1-thread-10] Initializing /data/images/Delta-gray-a16w.mng: [testng] [2024-04-08 02:17:35,566] [pool-1-thread-9] Initializing /data/images/MNGTERM0.mng: [testng] [2024-04-08 02:17:35,575] [pool-1-thread-12] Initializing /data/images/png/Delta-rgb-aEightB.png: [testng] [2024-04-08 02:17:35,578] [pool-1-thread-4] Initializing /data/images/Delta-gray4.mng: [testng] [2024-04-08 02:17:35,610] [pool-1-thread-11] Initializing /data/images/PROM-BASI-repl.mng: [testng] [2024-04-08 02:17:35,634] [pool-1-thread-1] Initializing /data/images/PROM-BASN-zfil.mng: [testng] [2024-04-08 02:17:35,665] [pool-1-thread-7] Initializing /data/images/Delta-rgb-a8b.mng: [testng] [2024-04-08 02:17:35,696] [pool-1-thread-6] Initializing /data/images/png/Delta-gray-a16w.png: [testng] [2024-04-08 02:17:35,707] [pool-1-thread-2] Initializing /data/images/png/Delta-rgbEight.png: [testng] [2024-04-08 02:17:35,746] [pool-1-thread-12] Initializing /data/images/MNGPAST16b.mng: [testng] [2024-04-08 02:17:35,833] [pool-1-thread-9] Initializing /data/images/PNGFxxxx.mng: [testng] [2024-04-08 02:17:35,846] [pool-1-thread-6] Initializing /data/images/MNGTERM3-6.mng: [testng] [2024-04-08 02:17:35,879] [pool-1-thread-2] Initializing /data/images/scrollTwo.mng: [testng] [2024-04-08 02:17:35,919] [pool-1-thread-4] Initializing /data/images/buttonOne.mng: [testng] [2024-04-08 02:17:35,994] [pool-1-thread-12] Initializing /data/images/buttonTwo.mng: [testng] [2024-04-08 02:17:36,018] [pool-1-thread-10] Initializing /data/images/MNGTERM3-8.mng: [testng] [2024-04-08 02:17:36,099] [pool-1-thread-1] Initializing /data/images/Delta-gray-a16b.mng: [testng] [2024-04-08 02:17:36,164] [pool-1-thread-6] Initializing /data/images/Delta-rgbEight.mng: [testng] [2024-04-08 02:17:36,174] [pool-1-thread-11] Initializing /data/images/Delta-rgb-a8w.mng: [testng] [2024-04-08 02:17:36,199] [pool-1-thread-7] Initializing /data/images/MNGTERM3-0.mng: [testng] [2024-04-08 02:17:36,225] [pool-1-thread-9] Initializing /data/roger/Well E6_01.mng: [testng] [2024-04-08 02:17:38,913] [pool-1-thread-4] Initializing /data/images/png/Delta-grayTwo.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 4134, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 54 seconds Finished: SUCCESS