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Started by upstream project "BIOFORMATS-test-repo" build number 222 originally caused by: Started by upstream project "Trigger" build number 249 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins11358882034197685821.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35273_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 08:32:41,035 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:32:41,036 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 08:32:41,036 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:32:41,037 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:32:41,037 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:32:41,037 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:32:41,038 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:32:41,038 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:32:41,038 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:32:41,038 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:32:41,039 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:32:41,039 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:32:41,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:32:41,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:32:41,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:32:41,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:32:41,214 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:32:41,214 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:32:41,214 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:32:41,214 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:32:41,214 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 08:32:41,215 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 08:32:41,215 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 177 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-16 08:32:41,223] [main] java.version = 17.0.2 [testng] 08:32:41,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:32:41,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:32:41,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-16_08-32-41.log] [testng] 08:32:41,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-16 08:32:41,266] [main] testng.directory = /data [testng] [2024-10-16 08:32:41,266] [main] testng.configDirectory = /config [testng] [2024-10-16 08:32:41,274] [main] testng.multiplier = 1.0 [testng] [2024-10-16 08:32:41,274] [main] testng.in-memory = false [testng] [2024-10-16 08:32:41,274] [main] testng.allow-missing = false [testng] [2024-10-16 08:32:41,275] [main] user.language = en [testng] [2024-10-16 08:32:41,275] [main] user.country = ${user.country} [testng] [2024-10-16 08:32:41,275] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-16 09:13:52,595] [main] ---------------------------------------- [testng] [2024-10-16 09:13:52,595] [main] Total files: 7329 [testng] [2024-10-16 09:13:52,595] [main] Scan time: 2471.32 s (337 ms/file) [testng] [2024-10-16 09:13:52,595] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-16 10:10:04,433] [pool-1-thread-1] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] 10:10:04,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 10:10:04,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:10:04,435 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-16_10-10-04.log] [testng] 10:10:04,435 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e57b8a2 - End of configuration. [testng] [2024-10-16 10:10:13,869] [pool-1-thread-12] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] 10:10:13,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 10:10:13,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:10:13,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-16_10-10-13.log] [testng] 10:10:13,870 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f72463 - End of configuration. [testng] [2024-10-16 10:11:54,474] [pool-1-thread-11] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] 10:11:54,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 10:11:54,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:54,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-16_10-11-54.log] [testng] 10:11:54,475 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74be184d - End of configuration. [testng] [2024-10-16 10:12:03,227] [pool-1-thread-10] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] 10:12:03,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 10:12:03,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:12:03,228 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-16_10-12-03.log] [testng] 10:12:03,228 |-INFO in ch.qos.logback.core.sift.SiftProcessor@301db763 - End of configuration. [testng] [2024-10-16 10:12:12,862] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] 10:12:12,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 10:12:12,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:12:12,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-16_10-12-12.log] [testng] 10:12:12,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ffa31bc - End of configuration. [testng] [2024-10-16 10:12:22,322] [pool-1-thread-8] Initializing /data/samples/zseries.stk: [testng] 10:12:22,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 10:12:22,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:12:22,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-16_10-12-22.log] [testng] 10:12:22,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@383c3c91 - End of configuration. [testng] [2024-10-16 10:12:30,784] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] 10:12:30,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 10:12:30,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:12:30,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-16_10-12-30.log] [testng] 10:12:30,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78759326 - End of configuration. [testng] [2024-10-16 10:12:37,002] [pool-1-thread-7] Used files list does not include base file [testng] [2024-10-16 10:12:37,004] [pool-1-thread-6] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] 10:12:37,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 10:12:37,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:12:37,005 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-16_10-12-37.log] [testng] 10:12:37,005 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6367591b - End of configuration. [testng] [2024-10-16 10:12:49,164] [pool-1-thread-5] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] 10:12:49,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 10:12:49,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:12:49,165 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-16_10-12-49.log] [testng] 10:12:49,166 |-INFO in ch.qos.logback.core.sift.SiftProcessor@515dc898 - End of configuration. [testng] [2024-10-16 10:13:45,411] [pool-1-thread-4] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] 10:13:45,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 10:13:45,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:13:45,412 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-16_10-13-45.log] [testng] 10:13:45,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4eb1927e - End of configuration. [testng] [2024-10-16 10:13:52,390] [pool-1-thread-3] Initializing /data/ascb/mt prc1 kif4.tif: [testng] 10:13:52,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 10:13:52,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:13:52,391 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-16_10-13-52.log] [testng] 10:13:52,391 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3337ffcd - End of configuration. [testng] [2024-10-16 10:13:59,073] [pool-1-thread-2] Initializing /data/josh/2101to600astk.stk: [testng] 10:13:59,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 10:13:59,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:13:59,073 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-16_10-13-59.log] [testng] 10:13:59,074 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3886f570 - End of configuration. [testng] [2024-10-16 10:16:26,782] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-10-16 10:16:31,862] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-10-16 10:16:36,806] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-10-16 10:16:44,358] [pool-1-thread-9] Used files list does not include base file [testng] [2024-10-16 10:16:44,360] [pool-1-thread-11] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-10-16 10:16:50,763] [pool-1-thread-3] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-10-16 10:17:17,379] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-10-16 10:17:27,370] [pool-1-thread-3] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-10-16 10:17:34,938] [pool-1-thread-10] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-10-16 10:17:49,538] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-10-16 10:17:50,575] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-10-16 10:18:30,501] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-10-16 10:18:45,327] [pool-1-thread-1] Initializing /data/grant/X.STK: [testng] [2024-10-16 10:19:01,145] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-10-16 10:19:28,554] [pool-1-thread-8] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-10-16 10:19:41,312] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-10-16 10:19:56,713] [pool-1-thread-3] Initializing /data/jerome/deconv.STK: [testng] [2024-10-16 10:20:05,583] [pool-1-thread-10] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-10-16 10:20:52,752] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-16 10:21:08,334] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-10-16 10:21:21,685] [pool-1-thread-8] Used files list does not include base file [testng] [2024-10-16 10:21:35,159] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-10-16 10:21:48,165] [pool-1-thread-3] Used files list does not include base file [testng] [2024-10-16 10:22:23,260] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-10-16 10:22:32,548] [pool-1-thread-11] Used files list does not include base file [testng] [2024-10-16 10:22:32,691] [pool-1-thread-7] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-10-16 10:23:23,657] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-10-16 10:23:44,616] [pool-1-thread-1] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-10-16 10:23:57,076] [pool-1-thread-4] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-10-16 10:24:28,503] [pool-1-thread-9] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-10-16 10:24:39,170] [pool-1-thread-11] Initializing /data/josh/2101to400astk.stk: [testng] [2024-10-16 10:25:58,398] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-10-16 10:26:19,664] [pool-1-thread-4] Initializing /data/qa-16915/m-04.tif: [testng] [2024-10-16 10:26:48,038] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-10-16 10:27:15,866] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-10-16 10:27:50,725] [pool-1-thread-4] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-10-16 10:28:27,232] [pool-1-thread-7] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-16 10:28:53,335] [pool-1-thread-4] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-10-16 10:29:02,359] [pool-1-thread-1] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-10-16 10:29:38,328] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-16 10:30:03,911] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-10-16 10:30:29,381] [pool-1-thread-8] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-10-16 10:30:42,235] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-10-16 10:31:19,604] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-10-16 10:31:35,574] [pool-1-thread-7] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-10-16 10:31:54,219] [pool-1-thread-8] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-10-16 10:32:29,595] [pool-1-thread-1] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-10-16 10:32:46,642] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-10-16 10:33:02,951] [pool-1-thread-7] Used files list does not include base file [testng] [2024-10-16 10:33:03,088] [pool-1-thread-9] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-10-16 10:36:30,974] [pool-1-thread-8] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-10-16 10:37:20,680] [pool-1-thread-4] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-10-16 10:37:44,129] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-10-16 10:38:06,711] [pool-1-thread-1] Used files list does not include base file [testng] [2024-10-16 10:38:06,966] [pool-1-thread-6] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-10-16 10:38:36,107] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-10-16 10:39:29,305] [pool-1-thread-8] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-10-16 10:40:04,614] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-10-16 10:40:57,479] [pool-1-thread-11] Initializing /data/thomas/test.tif: [testng] [2024-10-16 10:41:11,217] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-10-16 10:41:28,805] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-10-16 10:43:17,981] [pool-1-thread-6] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-10-16 10:43:41,165] [pool-1-thread-11] Initializing /data/ascb/golgi marker.tif: [testng] [2024-10-16 10:44:01,793] [pool-1-thread-3] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-10-16 10:44:11,764] [pool-1-thread-8] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-10-16 10:44:42,800] [pool-1-thread-11] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-10-16 10:45:01,137] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-10-16 10:45:09,210] [pool-1-thread-3] Used files list does not include base file [testng] [2024-10-16 10:45:33,143] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-10-16 10:45:46,928] [pool-1-thread-6] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-10-16 10:46:06,225] [pool-1-thread-7] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-10-16 10:46:15,707] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-10-16 10:46:40,973] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-10-16 10:46:51,248] [pool-1-thread-8] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-10-16 10:47:45,159] [pool-1-thread-11] Initializing /data/josh/2101to600e.stk: [testng] [2024-10-16 10:50:46,113] [pool-1-thread-1] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-10-16 10:51:01,026] [pool-1-thread-3] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-10-16 10:51:41,799] [pool-1-thread-2] Initializing /data/thomas/t_test2001.tif: [testng] [2024-10-16 10:51:49,192] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-10-16 10:52:31,748] [pool-1-thread-2] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-10-16 10:52:48,255] [pool-1-thread-1] Initializing /data/aaron/metamorph.stk: [testng] [2024-10-16 10:53:00,308] [pool-1-thread-3] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-10-16 10:53:23,450] [pool-1-thread-11] Initializing /data/alex/Selected FITC.stk: [testng] [2024-10-16 10:53:52,033] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-10-16 10:53:58,099] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-10-16 10:54:08,460] [pool-1-thread-1] Used files list does not include base file [testng] [2024-10-16 10:54:26,268] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-10-16 10:54:40,445] [pool-1-thread-11] Used files list does not include base file [testng] [2024-10-16 10:55:58,482] [pool-1-thread-3] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-10-16 10:56:43,163] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-10-16 10:57:01,548] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-10-16 10:57:15,564] [pool-1-thread-7] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-10-16 10:57:57,170] [pool-1-thread-4] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-10-16 10:58:13,414] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-10-16 10:59:36,802] [pool-1-thread-2] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-10-16 10:59:59,325] [pool-1-thread-7] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-10-16 11:00:57,144] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-10-16 11:01:07,865] [pool-1-thread-4] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-10-16 11:01:22,287] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-10-16 11:01:36,421] [pool-1-thread-2] Used files list does not include base file [testng] [2024-10-16 11:02:02,246] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-10-16 11:02:16,649] [pool-1-thread-4] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-10-16 11:03:03,002] [pool-1-thread-3] Initializing /data/samples/10xcalib.tif: [testng] [2024-10-16 11:03:13,305] [pool-1-thread-1] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-10-16 11:03:23,304] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-10-16 11:03:42,652] [pool-1-thread-4] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-10-16 11:04:07,711] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-10-16 11:04:53,767] [pool-1-thread-3] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-10-16 11:05:07,880] [pool-1-thread-1] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-10-16 11:05:40,061] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-16 11:05:51,677] [pool-1-thread-9] Initializing /data/qa-16915/m-01.tif: [testng] [2024-10-16 11:06:07,284] [pool-1-thread-4] Initializing /data/qa-16887/m-01.tif: [testng] [2024-10-16 11:06:24,144] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-10-16 11:07:02,833] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-10-16 11:07:22,464] [pool-1-thread-9] Used files list does not include base file [testng] [2024-10-16 11:07:22,537] [pool-1-thread-4] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-10-16 11:07:43,723] [pool-1-thread-3] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-10-16 11:08:05,605] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-10-16 11:08:22,964] [pool-1-thread-1] Used files list does not include base file [testng] [2024-10-16 11:08:57,189] [pool-1-thread-8] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-10-16 11:09:05,757] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-10-16 11:09:15,898] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-10-16 11:10:02,849] [pool-1-thread-8] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-10-16 11:10:13,964] [pool-1-thread-11] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-10-16 11:10:25,251] [pool-1-thread-2] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-10-16 11:10:36,675] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-16 11:11:28,214] [pool-1-thread-2] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-10-16 11:11:41,708] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-10-16 11:11:55,571] [pool-1-thread-8] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-10-16 11:12:41,860] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-10-16 11:13:00,645] [pool-1-thread-3] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-10-16 11:13:13,476] [pool-1-thread-11] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-10-16 11:14:07,062] [pool-1-thread-11] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-10-16 11:14:14,574] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-10-16 11:14:26,098] [pool-1-thread-2] Used files list does not include base file [testng] [2024-10-16 11:14:26,099] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-10-16 11:14:36,606] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-10-16 11:15:47,792] [pool-1-thread-8] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-10-16 11:16:27,888] [pool-1-thread-4] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-10-16 11:16:39,211] [pool-1-thread-9] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-10-16 11:17:17,391] [pool-1-thread-11] Initializing /data/josh/2101to600f.stk: [testng] [2024-10-16 11:19:01,222] [pool-1-thread-1] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-10-16 11:19:14,173] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-10-16 11:19:36,570] [pool-1-thread-4] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-10-16 11:19:45,479] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-10-16 11:21:25,654] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-10-16 11:21:54,923] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-10-16 11:22:16,233] [pool-1-thread-9] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-10-16 11:23:24,093] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-10-16 11:24:05,690] [pool-1-thread-4] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-10-16 11:24:34,904] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-10-16 11:25:08,925] [pool-1-thread-9] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-10-16 11:25:38,457] [pool-1-thread-2] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-10-16 11:25:48,457] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-16 11:26:11,657] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-10-16 11:26:19,759] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-10-16 11:26:54,526] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-10-16 11:27:04,373] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-16 11:27:50,898] [pool-1-thread-3] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-10-16 11:28:00,494] [pool-1-thread-2] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-10-16 11:28:27,754] [pool-1-thread-9] Initializing /data/samples/diatoms3d.stk: [testng] [2024-10-16 11:28:47,153] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-10-16 11:30:20,223] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-10-16 11:30:39,724] [pool-1-thread-2] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-10-16 11:32:36,073] [pool-1-thread-11] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-10-16 11:32:43,450] [pool-1-thread-9] Initializing /data/dave/Z Series.stk: [testng] [2024-10-16 11:32:53,021] [pool-1-thread-3] Initializing /data/steve/Experiment2.stk: [testng] [2024-10-16 11:33:14,851] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-10-16 11:33:25,629] [pool-1-thread-4] Used files list does not include base file [testng] [2024-10-16 11:33:35,941] [pool-1-thread-11] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-10-16 11:34:28,442] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-10-16 11:34:47,054] [pool-1-thread-3] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-10-16 11:40:10,741] [pool-1-thread-4] Initializing /data/josh/2101to600b.stk: [testng] [2024-10-16 11:41:21,430] [pool-1-thread-1] Initializing /data/samples/zserSixteen.stk: [testng] [2024-10-16 11:41:28,266] [pool-1-thread-11] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-10-16 11:42:12,467] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-10-16 11:42:13,428] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-10-16 11:42:38,281] [pool-1-thread-1] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-10-16 11:45:13,743] [pool-1-thread-11] Initializing /data/cumol-test-series/23.001: [testng] [2024-10-16 11:46:13,416] [pool-1-thread-1] Initializing /data/steve/Experiment2.tif: [testng] [2024-10-16 11:47:00,885] [pool-1-thread-1] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] 11:47:07,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:47:07,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:47:07,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-16_11-47-07.log] [testng] 11:47:07,995 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c71fad0 - End of configuration. [testng] [2024-10-16 11:47:38,597] [pool-1-thread-4] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-10-16 11:48:01,550] [pool-1-thread-4] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-10-16 11:48:48,413] [pool-1-thread-4] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-10-16 11:49:42,711] [pool-1-thread-1] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-10-16 11:50:09,448] [pool-1-thread-4] Initializing /data/samples/zser24.stk: [testng] [2024-10-16 11:50:30,959] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-16 11:50:40,842] [pool-1-thread-1] Initializing /data/jae/RGB_s34.tif: [testng] [2024-10-16 11:51:06,852] [pool-1-thread-4] Initializing /data/josh/2101to800.stk: [testng] [2024-10-16 11:52:17,876] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-16 11:52:57,256] [pool-1-thread-11] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-10-16 11:53:57,471] [pool-1-thread-11] Initializing /data/samples/zserEight.stk: [testng] [2024-10-16 11:54:09,556] [pool-1-thread-1] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-10-16 11:54:46,984] [pool-1-thread-11] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-10-16 11:54:58,198] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-10-16 11:55:24,490] [pool-1-thread-4] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-10-16 11:55:47,870] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-10-16 11:55:56,753] [pool-1-thread-11] Used files list does not include base file [testng] [2024-10-16 11:55:56,916] [pool-1-thread-1] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-10-16 11:56:44,169] [pool-1-thread-1] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-10-16 11:56:59,334] [pool-1-thread-8] Initializing /data/david/tl4.tif: [testng] [2024-10-16 11:57:40,131] [pool-1-thread-11] Initializing /data/qa-16915/m-02.tif: [testng] [2024-10-16 11:58:05,861] [pool-1-thread-9] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-10-16 11:58:15,768] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-10-16 11:58:27,234] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-10-16 11:58:51,473] [pool-1-thread-11] Initializing /data/ascb/mt aim.tif: [testng] [2024-10-16 11:59:04,496] [pool-1-thread-9] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-10-16 11:59:26,810] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-10-16 11:59:36,831] [pool-1-thread-4] Used files list does not include base file [testng] [2024-10-16 11:59:36,832] [pool-1-thread-8] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-10-16 12:00:06,364] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-10-16 12:00:23,265] [pool-1-thread-9] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-10-16 12:01:04,711] [pool-1-thread-11] Initializing /data/samples/10xcalib.stk: [testng] 13:08:07,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 13:08:07,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:08:07,743 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-16_13-08-07.log] [testng] 13:08:07,744 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33c3e2db - End of configuration. Build was aborted Calling Pipeline was cancelled Finished: ABORTED