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Started by upstream project "BIOFORMATS-test-repo" build number 222
originally caused by:
 Started by upstream project "Trigger" build number 249
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins431901415800261415.sh
+ '[' scanr = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_35314_merge_ci -v /uod/idr/repos/curated/scanr:/data -v /uod/idr-scratch/merge-ci/curated/scanr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 17:55:29,390 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 17:55:29,391 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 17:55:29,391 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 17:55:29,392 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 17:55:29,392 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 17:55:29,393 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 17:55:29,393 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 17:55:29,393 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 17:55:29,393 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 17:55:29,394 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 17:55:29,394 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 17:55:29,394 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 17:55:29,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 17:55:29,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 17:55:29,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 17:55:29,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 17:55:29,598 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 17:55:29,598 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 17:55:29,599 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 17:55:29,599 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 17:55:29,599 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 17:55:29,600 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 17:55:29,601 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 208 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-16 17:55:29,609] [main] java.version = 17.0.2
   [testng] 17:55:29,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 17:55:29,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 17:55:29,651 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-16_17-55-29.log]
   [testng] 17:55:29,652 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-10-16 17:55:29,654] [main] testng.directory = /data
   [testng] [2024-10-16 17:55:29,654] [main] testng.configDirectory = /config
   [testng] [2024-10-16 17:55:29,662] [main] testng.multiplier = 1.0
   [testng] [2024-10-16 17:55:29,662] [main] testng.in-memory = false
   [testng] [2024-10-16 17:55:29,663] [main] testng.allow-missing = false
   [testng] [2024-10-16 17:55:29,663] [main] user.language = en
   [testng] [2024-10-16 17:55:29,663] [main] user.country = ${user.country}
   [testng] [2024-10-16 17:55:29,663] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-16 18:00:54,913] [main] ----------------------------------------
   [testng] [2024-10-16 18:00:54,913] [main] Total files: 2169
   [testng] [2024-10-16 18:00:54,913] [main] Scan time: 325.25 s (149 ms/file)
   [testng] [2024-10-16 18:00:54,914] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 17 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-16 19:22:46,931] [pool-1-thread-1] Initializing /data/christian/example/experiment_descriptor.xml: 
   [testng] 19:22:46,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 19:22:46,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 19:22:46,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-16_19-22-46.log]
   [testng] 19:22:46,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a11efad - End of configuration.
   [testng] [2024-10-16 19:22:52,451] [pool-1-thread-12] Initializing /data/gideon/experiment_descriptor.xml: 
   [testng] 19:22:52,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 19:22:52,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 19:22:52,453 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-16_19-22-52.log]
   [testng] 19:22:52,453 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4981f76 - End of configuration.
   [testng] [2024-10-16 19:25:14,691] [pool-1-thread-11] Initializing /data/public/idr0009/0307-10--2007-05-30/experiment_descriptor.xml: 
   [testng] 19:25:14,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 19:25:14,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 19:25:14,692 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-16_19-25-14.log]
   [testng] 19:25:14,693 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bc152a7 - End of configuration.
   [testng] [2024-10-16 19:28:59,993] [pool-1-thread-10] Initializing /data/nadine/experiment_descriptor.xml: 
   [testng] 19:28:59,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 19:28:59,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 19:28:59,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-16_19-28-59.log]
   [testng] 19:28:59,995 |-INFO in ch.qos.logback.core.sift.SiftProcessor@233091b9 - End of configuration.
   [testng] [2024-10-16 19:29:06,485] [pool-1-thread-9] Initializing /data/ruben/TestPlate_Mock_01_001/experiment_descriptor.xml: 
   [testng] 19:29:06,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 19:29:06,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 19:29:06,486 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-16_19-29-06.log]
   [testng] 19:29:06,487 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c0ac1f7 - End of configuration.
   [testng] [2024-10-16 19:30:05,047] [pool-1-thread-8] Initializing /data/juergen/Experiment/experiment_descriptor.xml: 
   [testng] 19:30:05,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 19:30:05,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 19:30:05,048 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-16_19-30-05.log]
   [testng] 19:30:05,049 |-INFO in ch.qos.logback.core.sift.SiftProcessor@763c82e3 - End of configuration.
   [testng] [2024-10-16 19:30:11,540] [pool-1-thread-7] Initializing /data/ruben/20100827_004/experiment_descriptor.xml: 
   [testng] 19:30:11,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 19:30:11,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 19:30:11,541 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-16_19-30-11.log]
   [testng] 19:30:11,542 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b13bd2 - End of configuration.
   [testng] [2024-10-16 19:39:08,119] [pool-1-thread-6] Initializing /data/jcb/201301120/p17/experiment_descriptor.xml: 
   [testng] 19:39:08,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 19:39:08,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 19:39:08,121 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-16_19-39-08.log]
   [testng] 19:39:08,121 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c6dc7be - End of configuration.
   [testng] [2024-10-16 19:51:58,174] [pool-1-thread-5] Initializing /data/ruben/plate_002/experiment_descriptor.xml: 
   [testng] 19:51:58,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 19:51:58,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 19:51:58,175 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-16_19-51-58.log]
   [testng] 19:51:58,176 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26f5dea8 - End of configuration.
   [testng] [2024-10-16 19:52:16,587] [pool-1-thread-4] Initializing /data/ruben/12-05-25_009/experiment_descriptor.xml: 
   [testng] 19:52:16,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 19:52:16,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 19:52:16,588 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-16_19-52-16.log]
   [testng] 19:52:16,588 |-INFO in ch.qos.logback.core.sift.SiftProcessor@189bf79d - End of configuration.
   [testng] [2024-10-16 19:53:50,877] [pool-1-thread-3] Initializing /data/jcb/201301120/p2/experiment_descriptor.xml: 
   [testng] 19:53:50,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 19:53:50,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 19:53:50,877 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-16_19-53-50.log]
   [testng] 19:53:50,878 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3728d23c - End of configuration.
   [testng] [2024-10-16 20:04:55,353] [pool-1-thread-2] Initializing /data/ruben/scanr_no_labels/Peter/experiment_descriptor.xml: 
   [testng] 20:04:55,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 20:04:55,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 20:04:55,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-16_20-04-55.log]
   [testng] 20:04:55,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@686787ad - End of configuration.
   [testng] [2024-10-16 20:10:39,637] [pool-1-thread-1] Initializing /data/ruben/161009test2/151009_001/experiment_descriptor.xml: 
   [testng] [2024-10-16 20:26:30,316] [pool-1-thread-8] Initializing /data/embl/170309_Sec13_GM130m_001/experiment_descriptor.xml: 
   [testng] [2024-10-16 20:31:02,650] [pool-1-thread-10] Initializing /data/ruben/161009test2/151009_002/experiment_descriptor.xml: 
   [testng] [2024-10-16 20:45:00,037] [pool-1-thread-5] Initializing /data/embl/Maik_001/experiment_descriptor.xml: 
   [testng] [2024-10-16 21:23:56,119] [pool-1-thread-5] Initializing /data/ruben/280809_8wellLT_008/experiment_descriptor.xml: 
   [testng] 21:51:52,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 21:51:52,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 21:51:52,140 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-16_21-51-52.log]
   [testng] 21:51:52,140 |-INFO in ch.qos.logback.core.sift.SiftProcessor@504b562f - End of configuration.
   [testng] 22:19:32,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 22:19:32,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 22:19:32,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-16_22-19-32.log]
   [testng] 22:19:32,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77a9e01e - End of configuration.
Build was aborted
Calling Pipeline was cancelled
Finished: ABORTED