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Started by upstream project "BIOFORMATS-test-repo" build number 223 originally caused by: Started by upstream project "Trigger" build number 250 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins5129215745727548215.sh + '[' gatan = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35336_merge_ci -v /uod/idr/repos/curated/gatan:/data -v /uod/idr-scratch/merge-ci/curated/gatan:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:20:03,289 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:20:03,290 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 01:20:03,290 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:03,291 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:03,291 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:20:03,291 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:20:03,292 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:20:03,292 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:03,292 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:03,293 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:20:03,293 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:20:03,293 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:20:03,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:20:03,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:20:03,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:20:03,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:20:03,479 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:20:03,479 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:20:03,479 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:20:03,480 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:20:03,480 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 01:20:03,480 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 01:20:03,481 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 189 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-17 01:20:03,489] [main] java.version = 21 [testng] 01:20:03,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:20:03,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:03,534 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-17_01-20-03.log] [testng] 01:20:03,535 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-17 01:20:03,537] [main] testng.directory = /data [testng] [2024-10-17 01:20:03,537] [main] testng.configDirectory = /config [testng] [2024-10-17 01:20:03,549] [main] testng.multiplier = 1.0 [testng] [2024-10-17 01:20:03,550] [main] testng.in-memory = false [testng] [2024-10-17 01:20:03,550] [main] testng.allow-missing = false [testng] [2024-10-17 01:20:03,550] [main] user.language = en [testng] [2024-10-17 01:20:03,550] [main] user.country = ${user.country} [testng] [2024-10-17 01:20:03,550] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-17 01:20:40,804] [main] ---------------------------------------- [testng] [2024-10-17 01:20:40,805] [main] Total files: 103 [testng] [2024-10-17 01:20:40,805] [main] Scan time: 37.253 s (361 ms/file) [testng] [2024-10-17 01:20:40,805] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 98 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-17 01:23:49,481] [pool-1-thread-1] Initializing /data/jay/samples/APC2a-e4.tif: [testng] 01:23:49,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:23:49,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:49,483 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-17_01-23-49.log] [testng] 01:23:49,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6759a4d1 - End of configuration. [testng] [2024-10-17 01:23:54,492] [pool-1-thread-12] Initializing /data/public/imagesc-36590/SmallMontage0002.dm4: [testng] 01:23:54,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:23:54,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:54,496 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-17_01-23-54.log] [testng] 01:23:54,496 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d0405b4 - End of configuration. [testng] [2024-10-17 01:23:54,838] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0000.dm4: [testng] 01:23:54,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:23:54,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:54,839 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-17_01-23-54.log] [testng] 01:23:54,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1aa481b7 - End of configuration. [testng] [2024-10-17 01:23:55,214] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0005.dm4: [testng] 01:23:55,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:23:55,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:55,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-17_01-23-55.log] [testng] 01:23:55,215 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a3b4667 - End of configuration. [testng] [2024-10-17 01:23:55,494] [pool-1-thread-9] Initializing /data/public/imagesc-36590/SmallMontage0006.dm4: [testng] 01:23:55,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:23:55,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:55,496 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-17_01-23-55.log] [testng] 01:23:55,496 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67bee2ae - End of configuration. [testng] [2024-10-17 01:23:55,993] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0015.dm4: [testng] 01:23:55,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:23:55,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:55,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-17_01-23-55.log] [testng] 01:23:55,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71b5cb66 - End of configuration. [testng] [2024-10-17 01:23:56,702] [pool-1-thread-7] Initializing /data/jay/biosamplefullframetif.tif: [testng] 01:23:56,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:23:56,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:56,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-17_01-23-56.log] [testng] 01:23:56,704 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79426596 - End of configuration. [testng] [2024-10-17 01:24:02,163] [pool-1-thread-6] Initializing /data/jay/Carbon.34.dm3: [testng] 01:24:02,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:24:02,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:02,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-17_01-24-02.log] [testng] 01:24:02,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b59108f - End of configuration. [testng] [2024-10-17 01:24:02,928] [pool-1-thread-5] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.dm3: [testng] 01:24:02,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:24:02,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:02,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-17_01-24-02.log] [testng] 01:24:02,930 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d7c1c25 - End of configuration. [testng] [2024-10-17 01:24:03,718] [pool-1-thread-4] Initializing /data/public/EMPIAR/EMPIAR-10013/BGal_000438_frames.dm4: [testng] 01:24:03,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:24:03,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:03,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-17_01-24-03.log] [testng] 01:24:03,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28b099e6 - End of configuration. [testng] [2024-10-17 01:24:04,595] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0007.dm4: [testng] 01:24:04,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:24:04,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:04,596 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-17_01-24-04.log] [testng] 01:24:04,596 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8cd8ced - End of configuration. [testng] [2024-10-17 01:24:05,192] [pool-1-thread-2] Initializing /data/jayne/AM-2/MonGb3-S3.dm3: [testng] 01:24:05,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:24:05,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:05,192 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-17_01-24-05.log] [testng] 01:24:05,193 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ef0c82a - End of configuration. [testng] [2024-10-17 01:24:15,370] [pool-1-thread-12] Initializing /data/jay/recAmag6500dm.dm3: [testng] [2024-10-17 01:24:16,135] [pool-1-thread-9] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0046.dm4: [testng] [2024-10-17 01:24:16,883] [pool-1-thread-3] Initializing /data/jayne/AM-2/MonGb2-S9.dm3: [testng] [2024-10-17 01:24:17,239] [pool-1-thread-10] Initializing /data/jay/DMtest.dm3: [testng] [2024-10-17 01:24:17,912] [pool-1-thread-11] Initializing /data/public/imagesc-36590/SmallMontage0004.dm4: [testng] [2024-10-17 01:24:18,649] [pool-1-thread-8] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-1020x1020.tif: [testng] [2024-10-17 01:24:23,728] [pool-1-thread-6] Initializing /data/jay/smallerfile.dm3: [testng] [2024-10-17 01:24:24,765] [pool-1-thread-2] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0049.dm4: [testng] [2024-10-17 01:24:25,791] [pool-1-thread-5] Initializing /data/jay/dnasample.tif: [testng] [2024-10-17 01:24:29,671] [pool-1-thread-4] Initializing /data/qa-7642/8.dm4: [testng] [2024-10-17 01:24:35,422] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0009.dm4: [testng] [2024-10-17 01:24:37,851] [pool-1-thread-3] Initializing /data/qa-21647/Sample2_L1-0002.dm4: [testng] [2024-10-17 01:24:38,589] [pool-1-thread-12] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-363.dm3: [testng] [2024-10-17 01:24:40,457] [pool-1-thread-6] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-10-17 01:24:48,019] [pool-1-thread-10] Initializing /data/melissa/annotation-test.tif: [testng] [2024-10-17 01:24:52,906] [pool-1-thread-1] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0053.dm4: [testng] [2024-10-17 01:24:53,924] [pool-1-thread-4] Initializing /data/public/imagesc-36590/SmallMontage0001.dm4: [testng] [2024-10-17 01:24:55,028] [pool-1-thread-9] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0050.dm4: [testng] [2024-10-17 01:24:56,734] [pool-1-thread-7] Initializing /data/jayne/AM-2/MonGb3-S1.dm3: [testng] [2024-10-17 01:24:57,689] [pool-1-thread-3] Initializing /data/jay/samples/APC2a-e3.dm3: [testng] [2024-10-17 01:24:58,467] [pool-1-thread-2] Initializing /data/imagesc-3719/Prefix_BSE_slice_0001.dm4: [testng] [2024-10-17 01:24:59,965] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0003.dm4: [testng] [2024-10-17 01:25:01,485] [pool-1-thread-12] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0047.dm4: [testng] [2024-10-17 01:25:06,076] [pool-1-thread-8] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-10-17 01:25:12,197] [pool-1-thread-4] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0048.dm4: [testng] [2024-10-17 01:25:14,303] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0008.dm4: [testng] [2024-10-17 01:25:15,318] [pool-1-thread-5] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-256x256.tif: [testng] [2024-10-17 01:25:20,531] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0016.dm4: [testng] [2024-10-17 01:25:22,275] [pool-1-thread-1] Initializing /data/jay/samples/APC2a-e4.dm3: [testng] [2024-10-17 01:25:25,887] [pool-1-thread-2] Initializing /data/jay/DMtest2.dm3: [testng] [2024-10-17 01:25:27,024] [pool-1-thread-11] Initializing /data/jayne/AM-2/MonGb2-S8.dm3: [testng] [2024-10-17 01:25:28,325] [pool-1-thread-9] Initializing /data/ofra/lowloss.dm3: [testng] [2024-10-17 01:25:31,067] [pool-1-thread-3] Initializing /data/samples/test-tiles.dm3: [testng] [2024-10-17 01:25:33,605] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0017.dm4: [testng] [2024-10-17 01:25:34,858] [pool-1-thread-1] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362-smaller.tif: [testng] [2024-10-17 01:25:41,315] [pool-1-thread-6] Initializing /data/jay/samples/APC2a-e5.dm3: [testng] [2024-10-17 01:25:42,323] [pool-1-thread-7] Initializing /data/jay/dnasample1.dm3: [testng] [2024-10-17 01:25:43,325] [pool-1-thread-12] Initializing /data/jay/samples/APC2a-e3.tif: [testng] [2024-10-17 01:25:54,225] [pool-1-thread-9] Initializing /data/public/imagesc-36590/SmallMontage0003.dm4: [testng] [2024-10-17 01:25:56,804] [pool-1-thread-4] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.dm3: [testng] [2024-10-17 01:25:58,806] [pool-1-thread-2] Initializing /data/public/imagesc-36590/SmallMontage0000.dm4: [testng] [2024-10-17 01:26:00,477] [pool-1-thread-11] Initializing /data/nuno/Prefix_3VBSED_stack_30_slice_0290.dm3: [testng] [2024-10-17 01:26:01,321] [pool-1-thread-3] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-10-17 01:26:12,677] [pool-1-thread-6] Initializing /data/thorsten/60kx_HAADF_03.dm3: [testng] [2024-10-17 01:26:13,132] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0018.dm4: [testng] [2024-10-17 01:26:13,796] [pool-1-thread-10] Initializing /data/public/imagesc-36590/SmallMontage0005.dm4: [testng] [2024-10-17 01:26:14,896] [pool-1-thread-7] Initializing /data/jay/biosamplefullframe.dm3: [testng] [2024-10-17 01:26:16,174] [pool-1-thread-8] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-128x128.tif: [testng] [2024-10-17 01:26:22,495] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0013.dm4: [testng] [2024-10-17 01:26:25,790] [pool-1-thread-2] Initializing /data/public/imagesc-36590/SmallMontage0008.dm4: [testng] [2024-10-17 01:26:28,592] [pool-1-thread-6] Initializing /data/nuno/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-10-17 01:26:29,951] [pool-1-thread-10] Initializing /data/imagesc-3719/Heart_BSE_slice_0019.dm4: [testng] [2024-10-17 01:26:31,399] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0012.dm4: [testng] [2024-10-17 01:26:32,649] [pool-1-thread-11] Initializing /data/qa-8007/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-10-17 01:26:33,158] [pool-1-thread-4] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0052.dm4: [testng] [2024-10-17 01:26:38,670] [pool-1-thread-2] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-10-17 01:26:45,329] [pool-1-thread-12] Initializing /data/jay/samples/APC2a-e5.tif: [testng] [2024-10-17 01:26:49,726] [pool-1-thread-5] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.tif: [testng] [2024-10-17 01:26:55,743] [pool-1-thread-1] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0045.dm4: [testng] [2024-10-17 01:26:56,199] [pool-1-thread-7] Initializing /data/jay/camtest1.dm3: [testng] [2024-10-17 01:26:58,845] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0002.dm4: [testng] [2024-10-17 01:27:00,333] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0010.dm4: [testng] [2024-10-17 01:27:04,795] [pool-1-thread-11] Initializing /data/chip/Nanogold-1.dm3: [testng] [2024-10-17 01:27:06,487] [pool-1-thread-9] Initializing /data/melissa/annotation-test.dm3: [testng] [2024-10-17 01:27:07,534] [pool-1-thread-10] Initializing /data/jay/recAmaghi.dm3: [testng] [2024-10-17 01:27:13,747] [pool-1-thread-7] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-96x96.tif: [testng] [2024-10-17 01:27:20,838] [pool-1-thread-3] Initializing /data/public/imagesc-36590/SmallMontage0007.dm4: [testng] [2024-10-17 01:27:22,159] [pool-1-thread-8] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-799x799.tif: [testng] [2024-10-17 01:27:30,805] [pool-1-thread-6] Initializing /data/samples/mode-metadata/mode_format_test.dm3: [testng] [2024-10-17 01:27:31,594] [pool-1-thread-4] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.dm4: [testng] [2024-10-17 01:27:36,134] [pool-1-thread-9] Initializing /data/qa-11392/Example_Gatan_File.dm4: [testng] [2024-10-17 01:27:37,808] [pool-1-thread-1] Initializing /data/jay/ViewDMtest.dm3: [testng] [2024-10-17 01:27:40,823] [pool-1-thread-10] Initializing /data/jayne/AM-2/MonGb2-S7.dm3: [testng] [2024-10-17 01:27:43,595] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0019.dm4: [testng] [2024-10-17 01:27:46,325] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0004.dm4: [testng] [2024-10-17 01:27:48,079] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0014.dm4: [testng] [2024-10-17 01:27:50,589] [pool-1-thread-6] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-10-17 01:28:00,576] [pool-1-thread-5] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0051.dm4: [testng] [2024-10-17 01:28:01,010] [pool-1-thread-12] Initializing /data/qa-21761/example.dm4: [testng] [2024-10-17 01:28:01,148] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0001.dm4: [testng] [2024-10-17 01:28:04,682] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0006.dm4: [testng] [2024-10-17 01:28:06,874] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0011.dm4: [testng] [2024-10-17 01:28:07,898] [pool-1-thread-10] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-10-17 01:28:12,213] [pool-1-thread-11] Initializing /data/jay/graphitedm3.dm3: [testng] [2024-10-17 01:28:12,878] [pool-1-thread-3] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-480x480.tif: [testng] [2024-10-17 01:28:16,912] [pool-1-thread-7] Initializing /data/ofra/Co on INT 28-12-10.11.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 5194, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 minutes 42 seconds Finished: SUCCESS