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Started by upstream project "BIOFORMATS-test-repo" build number 223 originally caused by: Started by upstream project "Trigger" build number 250 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins18373196238571560195.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35344_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:21:09,707 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:21:09,708 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 01:21:09,708 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:09,709 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:09,709 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:21:09,709 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:21:09,710 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:21:09,710 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:09,710 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:09,711 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:21:09,711 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:21:09,711 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:21:09,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:21:09,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:09,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:09,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:09,884 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:09,884 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:09,885 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:09,885 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:09,885 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 01:21:09,886 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 01:21:09,886 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 176 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-17 01:21:09,894] [main] java.version = 21 [testng] 01:21:09,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:09,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:09,936 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-17_01-21-09.log] [testng] 01:21:09,937 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-17 01:21:09,938] [main] testng.directory = /data [testng] [2024-10-17 01:21:09,938] [main] testng.configDirectory = /config [testng] [2024-10-17 01:21:09,946] [main] testng.multiplier = 1.0 [testng] [2024-10-17 01:21:09,947] [main] testng.in-memory = false [testng] [2024-10-17 01:21:09,947] [main] testng.allow-missing = false [testng] [2024-10-17 01:21:09,947] [main] user.language = en [testng] [2024-10-17 01:21:09,947] [main] user.country = ${user.country} [testng] [2024-10-17 01:21:09,947] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-17 01:22:10,387] [main] ---------------------------------------- [testng] [2024-10-17 01:22:10,387] [main] Total files: 315 [testng] [2024-10-17 01:22:10,387] [main] Scan time: 60.44 s (191 ms/file) [testng] [2024-10-17 01:22:10,388] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 192 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-17 02:17:06,869] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] 02:17:06,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:17:06,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:06,871 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-17_02-17-06.log] [testng] 02:17:06,871 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c88f30d - End of configuration. [testng] [2024-10-17 02:17:17,046] [pool-1-thread-12] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] 02:17:17,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:17:17,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:17,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-17_02-17-17.log] [testng] 02:17:17,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@764d49b9 - End of configuration. [testng] [2024-10-17 02:17:19,308] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] 02:17:19,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:17:19,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:19,309 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-17_02-17-19.log] [testng] 02:17:19,310 |-INFO in ch.qos.logback.core.sift.SiftProcessor@118fc180 - End of configuration. [testng] [2024-10-17 02:17:27,494] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] 02:17:27,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:17:27,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:27,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-17_02-17-27.log] [testng] 02:17:27,495 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67dad599 - End of configuration. [testng] [2024-10-17 02:17:35,759] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] 02:17:35,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:17:35,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:35,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-17_02-17-35.log] [testng] 02:17:35,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7df3b49a - End of configuration. [testng] [2024-10-17 02:17:38,388] [pool-1-thread-8] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] 02:17:38,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:17:38,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:38,389 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-17_02-17-38.log] [testng] 02:17:38,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d117f3a - End of configuration. [testng] [2024-10-17 02:17:40,955] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] 02:17:40,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:17:40,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:40,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-17_02-17-40.log] [testng] 02:17:40,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c53d724 - End of configuration. [testng] [2024-10-17 02:17:44,253] [pool-1-thread-6] Initializing /data/qa-17293/Clipboard.tif: [testng] 02:17:44,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:17:44,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:44,254 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-17_02-17-44.log] [testng] 02:17:44,255 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b586253 - End of configuration. [testng] [2024-10-17 02:17:50,932] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] 02:17:50,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:17:50,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:50,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-17_02-17-50.log] [testng] 02:17:50,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@315951f6 - End of configuration. [testng] [2024-10-17 02:17:56,604] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] 02:17:56,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:17:56,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:56,604 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-17_02-17-56.log] [testng] 02:17:56,605 |-INFO in ch.qos.logback.core.sift.SiftProcessor@adc44e0 - End of configuration. [testng] [2024-10-17 02:18:04,406] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] 02:18:04,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:18:04,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:04,407 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-17_02-18-04.log] [testng] 02:18:04,407 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c24f856 - End of configuration. [testng] [2024-10-17 02:18:10,425] [pool-1-thread-2] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] 02:18:10,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:18:10,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:10,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-17_02-18-10.log] [testng] 02:18:10,426 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4eaa4801 - End of configuration. [testng] [2024-10-17 02:18:44,612] [pool-1-thread-3] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-10-17 02:18:49,002] [pool-1-thread-5] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-10-17 02:18:55,071] [pool-1-thread-2] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-10-17 02:18:59,225] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-10-17 02:19:02,859] [pool-1-thread-9] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-10-17 02:19:06,444] [pool-1-thread-10] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-10-17 02:19:10,231] [pool-1-thread-11] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-10-17 02:19:13,810] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-10-17 02:19:18,952] [pool-1-thread-6] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-10-17 02:19:43,310] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-10-17 02:19:47,859] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-10-17 02:20:00,536] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-10-17 02:20:03,886] [pool-1-thread-4] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-10-17 02:20:16,994] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-10-17 02:20:26,134] [pool-1-thread-9] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-10-17 02:20:36,071] [pool-1-thread-12] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-10-17 02:20:57,779] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-10-17 02:21:08,329] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2024-10-17 02:21:16,071] [pool-1-thread-6] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-10-17 02:21:22,190] [pool-1-thread-4] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-10-17 02:21:29,972] [pool-1-thread-7] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info: [testng] [2024-10-17 02:22:03,709] [pool-1-thread-12] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-10-17 02:22:11,947] [pool-1-thread-9] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-10-17 02:22:31,670] [pool-1-thread-3] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-10-17 02:22:43,873] [pool-1-thread-11] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-10-17 02:22:47,852] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-10-17 02:23:05,677] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-10-17 02:23:14,522] [pool-1-thread-5] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-10-17 02:23:27,042] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-10-17 02:23:58,622] [pool-1-thread-12] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-10-17 02:24:04,679] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-10-17 02:24:29,503] [pool-1-thread-4] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-10-17 02:24:35,093] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2024-10-17 02:24:50,508] [pool-1-thread-6] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-10-17 02:24:54,714] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-10-17 02:25:03,962] [pool-1-thread-3] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-10-17 02:25:25,719] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-10-17 02:25:38,649] [pool-1-thread-11] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-10-17 02:25:50,824] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-10-17 02:26:01,652] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-10-17 02:26:16,085] [pool-1-thread-5] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-10-17 02:26:20,422] [pool-1-thread-6] Initializing 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[2024-10-17 02:30:21,411] [pool-1-thread-2] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-10-17 02:30:33,074] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-10-17 02:30:37,857] [pool-1-thread-5] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-10-17 02:30:44,282] [pool-1-thread-3] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-10-17 02:30:49,668] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-10-17 02:31:30,993] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-10-17 02:32:08,877] [pool-1-thread-8] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-10-17 02:32:21,014] [pool-1-thread-4] Initializing /data/olympus/2021-04-20/overview 2 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Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-10-17 02:36:09,526] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-10-17 02:36:22,318] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-10-17 02:36:41,410] [pool-1-thread-5] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-10-17 02:36:45,831] [pool-1-thread-7] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-10-17 02:37:14,653] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-10-17 02:37:28,163] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-10-17 02:37:49,904] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-10-17 02:38:03,473] [pool-1-thread-7] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2024-10-17 02:38:24,152] [pool-1-thread-6] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-10-17 02:38:45,949] [pool-1-thread-8] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-10-17 02:38:51,229] [pool-1-thread-10] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-10-17 02:39:11,625] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-10-17 02:39:25,430] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-10-17 02:39:47,936] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-10-17 02:40:24,297] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-10-17 02:40:42,332] [pool-1-thread-5] Initializing 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[pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-10-17 02:49:05,680] [pool-1-thread-4] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-10-17 02:49:24,185] [pool-1-thread-10] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-10-17 02:56:54,399] [pool-1-thread-3] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-10-17 02:57:01,044] [pool-1-thread-7] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-10-17 02:57:07,878] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-10-17 02:57:51,215] [pool-1-thread-4] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-10-17 02:58:03,897] [pool-1-thread-8] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-10-17 02:58:29,057] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-10-17 02:58:53,040] [pool-1-thread-5] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-10-17 02:58:58,389] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-10-17 02:59:42,360] [pool-1-thread-7] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-10-17 02:59:49,872] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-10-17 02:59:58,657] [pool-1-thread-8] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-10-17 03:00:33,982] [pool-1-thread-5] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-10-17 03:00:49,838] [pool-1-thread-3] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-10-17 03:00:57,444] [pool-1-thread-6] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-10-17 03:01:34,201] [pool-1-thread-7] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-10-17 03:01:56,800] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-10-17 03:02:04,320] [pool-1-thread-8] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-10-17 03:02:39,162] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-10-17 03:03:01,307] [pool-1-thread-5] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-10-17 03:03:15,560] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-10-17 03:03:24,955] [pool-1-thread-6] Initializing /data/olympus/XYZt.vsi: [testng] [2024-10-17 03:04:03,414] [pool-1-thread-2] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-10-17 03:04:21,018] [pool-1-thread-4] Initializing /data/qa-17917/f10010.oir: [testng] [2024-10-17 03:04:55,319] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-10-17 03:05:09,996] [pool-1-thread-8] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-10-17 03:05:18,326] [pool-1-thread-3] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-10-17 03:05:41,700] [pool-1-thread-6] Initializing /data/olympus/XYZt.oir: [testng] [2024-10-17 03:06:12,370] [pool-1-thread-5] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-10-17 03:06:30,265] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-10-17 03:07:03,776] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-10-17 03:07:18,760] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-10-17 03:07:24,565] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 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03:09:59,538] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-10-17 03:10:23,794] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-10-17 03:10:36,035] [pool-1-thread-7] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-10-17 03:10:55,251] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-10-17 03:11:17,902] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-10-17 03:11:23,056] [pool-1-thread-3] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-10-17 03:11:35,156] [pool-1-thread-6] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-10-17 03:11:39,989] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-10-17 03:12:17,888] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-10-17 03:12:29,244] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-10-17 03:12:45,776] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-10-17 03:12:57,396] [pool-1-thread-8] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-10-17 03:13:04,483] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-10-17 03:13:09,082] [pool-1-thread-6] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-10-17 03:13:36,766] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-10-17 03:13:45,798] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-10-17 03:13:57,924] [pool-1-thread-7] Initializing /data/qa-17335/1.oir: [testng] [2024-10-17 03:14:06,763] [pool-1-thread-8] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-10-17 03:14:19,505] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] [2024-10-17 03:14:27,943] [pool-1-thread-2] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-10-17 03:15:01,404] [pool-1-thread-8] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-10-17 03:15:09,413] [pool-1-thread-4] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] 04:18:05,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:18:05,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:18:05,023 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-17_04-18-05.log] [testng] 04:18:05,023 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f546bb1 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 10176, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 176 minutes 59 seconds Finished: SUCCESS