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Started by upstream project "BIOFORMATS-test-repo" build number 223 originally caused by: Started by upstream project "Trigger" build number 250 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins7634067330088230306.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35375_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:15:13,524 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:15:13,525 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 03:15:13,525 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:15:13,526 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:15:13,526 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:15:13,527 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:15:13,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:15:13,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:15:13,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:15:13,528 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:15:13,528 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:15:13,529 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:15:13,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:15:13,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:15:13,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:15:13,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:15:13,718 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:15:13,718 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:15:13,718 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:15:13,719 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:15:13,719 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 03:15:13,720 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 03:15:13,720 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 193 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-17 03:15:13,729] [main] java.version = 21 [testng] 03:15:13,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:15:13,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:13,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-17_03-15-13.log] [testng] 03:15:13,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-17 03:15:13,776] [main] testng.directory = /data [testng] [2024-10-17 03:15:13,776] [main] testng.configDirectory = /config [testng] [2024-10-17 03:15:13,785] [main] testng.multiplier = 1.0 [testng] [2024-10-17 03:15:13,785] [main] testng.in-memory = false [testng] [2024-10-17 03:15:13,785] [main] testng.allow-missing = false [testng] [2024-10-17 03:15:13,786] [main] user.language = en [testng] [2024-10-17 03:15:13,786] [main] user.country = ${user.country} [testng] [2024-10-17 03:15:13,786] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-17 03:20:12,611] [main] ---------------------------------------- [testng] [2024-10-17 03:20:12,612] [main] Total files: 259 [testng] [2024-10-17 03:20:12,612] [main] Scan time: 298.825 s (1153 ms/file) [testng] [2024-10-17 03:20:12,612] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-17 04:14:03,005] [pool-1-thread-1] Initializing /data/molly/11OCT2.OIF: [testng] 04:14:03,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:14:03,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:03,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-17_04-14-03.log] [testng] 04:14:03,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1de86885 - End of configuration. [testng] [2024-10-17 04:16:11,527] [pool-1-thread-12] Initializing /data/kay/IM2pg.oib: [testng] 04:16:11,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:16:11,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:11,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-17_04-16-11.log] [testng] 04:16:11,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@954fb2a - End of configuration. [testng] [2024-10-17 04:16:14,335] [pool-1-thread-11] Initializing /data/johannes/step2.bmp: [testng] 04:16:14,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:16:14,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:14,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-17_04-16-14.log] [testng] 04:16:14,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@316ac66a - End of configuration. [testng] [2024-10-17 04:16:15,145] [pool-1-thread-10] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] 04:16:15,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:16:15,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:15,146 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-17_04-16-15.log] [testng] 04:16:15,146 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2683eba3 - End of configuration. [testng] [2024-10-17 04:16:18,107] [pool-1-thread-9] Initializing /data/chris/missegragation-15.oib: [testng] 04:16:18,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:16:18,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:18,108 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-17_04-16-18.log] [testng] 04:16:18,109 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6aa957aa - End of configuration. [testng] [2024-10-17 04:16:21,249] [pool-1-thread-8] Initializing /data/aryeh/1h_after_pdt.oib: [testng] 04:16:21,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:16:21,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:21,251 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-17_04-16-21.log] [testng] 04:16:21,251 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35fe2a4b - End of configuration. [testng] [2024-10-17 04:16:36,541] [pool-1-thread-7] Initializing /data/allan/new_30min3_1z2.oib: [testng] 04:16:36,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:16:36,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:36,542 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-17_04-16-36.log] [testng] 04:16:36,543 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23ce541e - End of configuration. [testng] [2024-10-17 04:16:39,110] [pool-1-thread-6] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] 04:16:39,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:16:39,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:39,111 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-17_04-16-39.log] [testng] 04:16:39,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c1a9a74 - End of configuration. [testng] [2024-10-17 04:16:42,126] [pool-1-thread-5] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] 04:16:42,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:16:42,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:42,127 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-17_04-16-42.log] [testng] 04:16:42,127 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cbcfc18 - End of configuration. [testng] [2024-10-17 04:16:47,796] [pool-1-thread-4] Initializing /data/stefan/cytosol_01a.oif: [testng] 04:16:47,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:16:47,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:47,797 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-17_04-16-47.log] [testng] 04:16:47,797 |-INFO in ch.qos.logback.core.sift.SiftProcessor@118ef4b4 - End of configuration. [testng] [2024-10-17 04:22:48,361] [pool-1-thread-3] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] 04:22:48,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:22:48,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:22:48,362 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-17_04-22-48.log] [testng] 04:22:48,362 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cf61f86 - End of configuration. [testng] [2024-10-17 04:22:53,726] [pool-1-thread-2] Initializing /data/glen/LUT issue/60x11.oif: [testng] 04:22:53,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:22:53,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:22:53,726 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-17_04-22-53.log] [testng] 04:22:53,727 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14efaf31 - End of configuration. [testng] [2024-10-17 04:23:18,535] [pool-1-thread-11] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-10-17 04:23:33,800] [pool-1-thread-9] Initializing /data/aryeh/1h.oib: [testng] [2024-10-17 04:23:40,376] [pool-1-thread-7] Initializing /data/david/Image0016.oib: [testng] [2024-10-17 04:23:43,500] [pool-1-thread-6] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-10-17 04:23:46,539] [pool-1-thread-10] Initializing /data/johannes/step4b.bmp: [testng] [2024-10-17 04:23:47,392] [pool-1-thread-12] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-10-17 04:24:02,182] [pool-1-thread-8] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-10-17 04:24:06,607] [pool-1-thread-10] Initializing /data/tom/RGB-1.avi: [testng] [2024-10-17 04:24:15,189] [pool-1-thread-9] Initializing /data/aryeh/control_test.oib: [testng] [2024-10-17 04:24:29,428] [pool-1-thread-11] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-10-17 04:24:32,657] [pool-1-thread-6] Initializing /data/johannes/step4.bmp: [testng] [2024-10-17 04:24:33,451] [pool-1-thread-7] Initializing /data/johannes/step3.bmp: [testng] [2024-10-17 04:24:34,396] [pool-1-thread-12] Initializing /data/glen/singlesimul.oif: [testng] [2024-10-17 04:24:47,798] [pool-1-thread-10] Initializing /data/glen/Image0002.oif: [testng] [2024-10-17 04:25:09,349] [pool-1-thread-7] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-10-17 04:25:12,420] [pool-1-thread-6] Initializing /data/glen/seqlinestack.oib: [testng] [2024-10-17 04:25:16,250] [pool-1-thread-8] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-10-17 04:25:23,425] [pool-1-thread-11] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-10-17 04:25:32,874] [pool-1-thread-9] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-10-17 04:25:42,867] [pool-1-thread-7] Initializing /data/johannes/step1.bmp: [testng] [2024-10-17 04:25:43,911] [pool-1-thread-6] Initializing /data/glen/singleseqframe.oib: [testng] [2024-10-17 04:25:49,383] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-10-17 04:26:00,227] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-10-17 04:26:06,050] [pool-1-thread-9] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-10-17 04:26:16,495] [pool-1-thread-6] Initializing /data/glen/singleseqline.oib: [testng] [2024-10-17 04:26:24,372] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-10-17 04:26:30,976] [pool-1-thread-7] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-10-17 04:26:38,165] [pool-1-thread-9] Initializing /data/yoshihito/XY.oib: [testng] [2024-10-17 04:26:48,020] [pool-1-thread-6] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-10-17 04:26:53,425] [pool-1-thread-3] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-10-17 04:27:00,874] [pool-1-thread-11] Initializing /data/michael/CELL3.oib: [testng] [2024-10-17 04:27:09,031] [pool-1-thread-7] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-10-17 04:27:12,709] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-10-17 04:27:23,632] [pool-1-thread-3] Initializing /data/simon/never_worked.oib: [testng] [2024-10-17 04:27:31,352] [pool-1-thread-11] Initializing /data/johannes/step5b.bmp: [testng] [2024-10-17 04:27:34,319] [pool-1-thread-7] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-10-17 04:27:39,885] [pool-1-thread-5] Initializing /data/glen/singleseqframe.oif: [testng] [2024-10-17 04:27:48,042] [pool-1-thread-11] Initializing /data/molly/11OCT5.OIF: [testng] [2024-10-17 04:29:08,418] [pool-1-thread-9] Initializing /data/brian/lambda02nm.oib: [testng] [2024-10-17 04:29:20,513] [pool-1-thread-3] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-10-17 04:29:31,608] [pool-1-thread-7] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-10-17 04:29:46,783] [pool-1-thread-9] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-10-17 04:29:53,374] [pool-1-thread-12] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-10-17 04:30:05,513] [pool-1-thread-3] Initializing /data/marc/V0606L.oib: [testng] [2024-10-17 04:30:17,110] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-10-17 04:30:31,144] [pool-1-thread-9] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-10-17 04:30:36,188] [pool-1-thread-12] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-10-17 04:30:51,141] [pool-1-thread-7] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-10-17 04:30:52,098] [pool-1-thread-3] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-10-17 04:30:59,554] [pool-1-thread-9] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-10-17 04:31:04,253] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-10-17 04:31:10,155] [pool-1-thread-12] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-10-17 04:32:00,876] [pool-1-thread-3] Initializing /data/molly/11OCT6.OIF: [testng] [2024-10-17 04:33:23,819] [pool-1-thread-9] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-10-17 04:33:30,698] [pool-1-thread-7] Initializing /data/david/Image0016.oif: [testng] [2024-10-17 04:33:47,555] [pool-1-thread-5] Initializing /data/glen/notsaturated.oif: [testng] [2024-10-17 04:34:03,580] [pool-1-thread-6] Initializing /data/marc/V0606J.oib: [testng] [2024-10-17 04:34:09,487] [pool-1-thread-9] Initializing /data/molly/11OCT7.OIF: [testng] [2024-10-17 04:36:07,210] [pool-1-thread-6] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-10-17 04:36:32,341] [pool-1-thread-6] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-10-17 04:42:13,089] [pool-1-thread-8] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-10-17 04:42:40,580] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-10-17 04:43:01,310] [pool-1-thread-8] Initializing /data/sten/01.oib: [testng] [2024-10-17 04:43:15,912] [pool-1-thread-7] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-10-17 04:43:22,189] [pool-1-thread-8] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-10-17 04:43:38,259] [pool-1-thread-7] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-10-17 04:43:53,231] [pool-1-thread-8] Initializing /data/brian/Kaede15.oib: [testng] [2024-10-17 04:44:13,255] [pool-1-thread-8] Initializing /data/molly/11OCT8.OIF: [testng] [2024-10-17 05:11:44,099] [pool-1-thread-5] Initializing /data/jae/Image0001.oib: [testng] [2024-10-17 05:12:03,797] [pool-1-thread-5] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-10-17 05:12:26,004] [pool-1-thread-5] Initializing /data/glen/4205basal106072.oif: [testng] [2024-10-17 05:29:31,095] [pool-1-thread-2] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-10-17 05:29:55,276] [pool-1-thread-2] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-10-17 05:30:18,888] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-10-17 05:30:47,410] [pool-1-thread-2] Initializing /data/simon/used_to_work.oib: [testng] [2024-10-17 05:31:14,264] [pool-1-thread-2] Initializing /data/glen/Null file/test change.oif: [testng] [2024-10-17 05:32:56,060] [pool-1-thread-7] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-10-17 05:33:19,524] [pool-1-thread-7] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-10-17 05:33:42,373] [pool-1-thread-7] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-10-17 05:34:01,105] [pool-1-thread-7] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-10-17 05:34:17,832] [pool-1-thread-2] Initializing /data/christian/20min.oif: [testng] [2024-10-17 05:34:22,959] [pool-1-thread-7] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-10-17 05:34:46,525] [pool-1-thread-7] Initializing /data/glen/111407.oif: [testng] [2024-10-17 05:36:07,314] [pool-1-thread-2] Initializing /data/glen/simulstack.oif: [testng] 05:46:01,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:46:01,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:46:01,588 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-17_05-46-01.log] [testng] 05:46:01,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@213def2b - End of configuration. [testng] [2024-10-17 05:46:30,925] [pool-1-thread-10] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-10-17 05:46:56,028] [pool-1-thread-10] Initializing /data/yasunori/series_1.oib: [testng] [2024-10-17 05:47:18,099] [pool-1-thread-10] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] 05:54:46,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:54:46,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:54:46,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-17_05-54-46.log] [testng] 05:54:46,549 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65925d62 - End of configuration. [testng] 05:56:46,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:56:46,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:56:46,545 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-17_05-56-46.log] [testng] 05:56:46,546 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66e9ad9d - End of configuration. [testng] [2024-10-17 05:59:52,391] [pool-1-thread-10] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-10-17 06:04:59,843] [pool-1-thread-11] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-10-17 06:05:59,964] [pool-1-thread-9] Initializing /data/glen/singleseqline.oif: [testng] [2024-10-17 06:08:39,164] [pool-1-thread-11] Initializing /data/glen/simulstack.oib: [testng] [2024-10-17 06:09:03,828] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-10-17 06:09:34,706] [pool-1-thread-11] Initializing /data/pedro/plv-test.oib: [testng] [2024-10-17 06:09:59,693] [pool-1-thread-11] Initializing /data/tom/zseries-test.oib: [testng] [2024-10-17 06:10:34,415] [pool-1-thread-11] Initializing /data/allan/62909#1.oib: [testng] [2024-10-17 06:10:55,779] [pool-1-thread-11] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] 06:11:27,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:11:27,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:11:27,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-17_06-11-27.log] [testng] 06:11:27,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b630a8f - End of configuration. [testng] [2024-10-17 06:11:31,710] [pool-1-thread-9] Initializing /data/molly/11OCT10.OIF: [testng] [2024-10-17 06:22:10,848] [pool-1-thread-10] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-10-17 06:26:30,941] [pool-1-thread-3] Initializing /data/brian/FLIP.oib: [testng] [2024-10-17 06:26:57,001] [pool-1-thread-3] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-10-17 06:31:19,075] [pool-1-thread-8] Initializing /data/molly/11OCT11.OIF: [testng] [2024-10-17 06:52:27,438] [pool-1-thread-7] Initializing /data/yoshihito/XY.oif: [testng] [2024-10-17 06:53:04,250] [pool-1-thread-12] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-10-17 06:53:20,962] [pool-1-thread-12] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-10-17 06:53:49,173] [pool-1-thread-12] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-10-17 06:54:03,627] [pool-1-thread-2] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-10-17 06:54:12,151] [pool-1-thread-12] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-10-17 06:54:24,093] [pool-1-thread-7] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-10-17 06:54:44,313] [pool-1-thread-7] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-10-17 06:55:03,824] [pool-1-thread-7] Initializing /data/karl/Image0009.oib: [testng] [2024-10-17 06:55:19,912] [pool-1-thread-7] Initializing /data/molly/11OCT4.OIF: [testng] [2024-10-17 06:57:11,905] [pool-1-thread-2] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-10-17 06:57:24,764] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-10-17 06:57:41,176] [pool-1-thread-2] Initializing /data/molly/11OCT9.OIF: [testng] 07:04:07,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:04:07,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:04:07,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-17_07-04-07.log] [testng] 07:04:07,789 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ff32340 - End of configuration. [testng] [2024-10-17 07:04:53,914] [pool-1-thread-12] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-10-17 07:05:08,338] [pool-1-thread-12] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-10-17 07:05:22,527] [pool-1-thread-12] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-10-17 07:05:31,745] [pool-1-thread-3] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-10-17 07:05:58,251] [pool-1-thread-12] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-10-17 07:06:13,167] [pool-1-thread-12] Initializing /data/molly/11OCT3.OIF: [testng] [2024-10-17 07:11:44,901] [pool-1-thread-5] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-10-17 07:11:50,133] [pool-1-thread-5] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-10-17 07:20:11,607] [pool-1-thread-1] Initializing /data/monica/Image0056.oif: [testng] [2024-10-17 07:23:08,741] [pool-1-thread-1] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-10-17 07:23:28,739] [pool-1-thread-1] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-10-17 07:23:45,053] [pool-1-thread-1] Initializing /data/glen/seqlinestack.oif: [testng] [2024-10-17 07:26:27,081] [pool-1-thread-5] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-10-17 07:26:51,308] [pool-1-thread-5] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-10-17 07:27:09,840] [pool-1-thread-5] Initializing /data/glen/notsaturated.oib: [testng] [2024-10-17 07:27:27,328] [pool-1-thread-5] Initializing /data/glen/singlesimul.oib: [testng] [2024-10-17 07:27:44,528] [pool-1-thread-5] Initializing /data/glen/Null file/test no change.oif: [testng] [2024-10-17 07:30:11,415] [pool-1-thread-5] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] 08:02:58,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:02:58,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:02:58,181 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-17_08-02-58.log] [testng] 08:02:58,182 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7685fefe - End of configuration. [testng] 08:08:18,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:08:18,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:08:18,504 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-17_08-08-18.log] [testng] 08:08:18,504 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d39e6da - End of configuration. [testng] 08:10:57,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:10:57,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:10:57,261 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-17_08-10-57.log] [testng] 08:10:57,261 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7047c2cd - End of configuration. [testng] 09:33:06,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:33:06,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:33:06,447 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-17_09-33-06.log] [testng] 09:33:06,447 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6226426a - End of configuration. Build was aborted Calling Pipeline was cancelled Finished: ABORTED