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Started by upstream project "BIOFORMATS-test-repo" build number 223 originally caused by: Started by upstream project "Trigger" build number 250 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins15022628041330235500.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35418_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 07:07:46,498 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 07:07:46,499 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 07:07:46,499 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:07:46,500 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:07:46,500 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:07:46,501 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:07:46,501 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:07:46,501 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:07:46,502 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:07:46,502 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:07:46,502 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:07:46,503 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:07:46,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:07:46,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:07:46,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:07:46,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:07:46,692 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:07:46,692 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:07:46,692 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:07:46,693 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:07:46,693 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 07:07:46,694 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 07:07:46,694 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 192 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-17 07:07:46,702] [main] java.version = 21 [testng] 07:07:46,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:07:46,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:07:46,747 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-17_07-07-46.log] [testng] 07:07:46,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-17 07:07:46,750] [main] testng.directory = /data [testng] [2024-10-17 07:07:46,750] [main] testng.configDirectory = /config [testng] [2024-10-17 07:07:46,759] [main] testng.multiplier = 1.0 [testng] [2024-10-17 07:07:46,760] [main] testng.in-memory = false [testng] [2024-10-17 07:07:46,760] [main] testng.allow-missing = false [testng] [2024-10-17 07:07:46,760] [main] user.language = en [testng] [2024-10-17 07:07:46,760] [main] user.country = ${user.country} [testng] [2024-10-17 07:07:46,760] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-17 07:40:16,460] [main] ---------------------------------------- [testng] [2024-10-17 07:40:16,461] [main] Total files: 7329 [testng] [2024-10-17 07:40:16,461] [main] Scan time: 1949.7 s (266 ms/file) [testng] [2024-10-17 07:40:16,461] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-17 08:30:58,385] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] 08:30:58,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:30:58,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:30:58,387 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-17_08-30-58.log] [testng] 08:30:58,387 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29623c0b - End of configuration. [testng] [2024-10-17 08:31:55,033] [pool-1-thread-12] Initializing /data/graham/G_Wright deconvolved.stk: [testng] 08:31:55,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:31:55,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:31:55,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-17_08-31-55.log] [testng] 08:31:55,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d67e41a - End of configuration. [testng] [2024-10-17 08:31:59,166] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] 08:31:59,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:31:59,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:31:59,167 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-17_08-31-59.log] [testng] 08:31:59,167 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b09f096 - End of configuration. [testng] [2024-10-17 08:32:03,481] [pool-1-thread-10] Initializing /data/aaron/metamorph.stk: [testng] 08:32:03,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:32:03,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:32:03,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-17_08-32-03.log] [testng] 08:32:03,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44465a1e - End of configuration. [testng] [2024-10-17 08:32:08,204] [pool-1-thread-9] Initializing /data/jae/RGB_s34.tif: [testng] 08:32:08,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:32:08,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:32:08,205 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-17_08-32-08.log] [testng] 08:32:08,205 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a2ebc7c - End of configuration. [testng] [2024-10-17 08:32:15,141] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] 08:32:15,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:32:15,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:32:15,141 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-17_08-32-15.log] [testng] 08:32:15,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c3d79b6 - End of configuration. [testng] [2024-10-17 08:32:21,637] [pool-1-thread-7] Initializing /data/samples/zserEight.stk: [testng] 08:32:21,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:32:21,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:32:21,638 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-17_08-32-21.log] [testng] 08:32:21,638 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d052b7c - End of configuration. [testng] [2024-10-17 08:32:26,962] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] 08:32:26,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:32:26,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:32:26,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-17_08-32-26.log] [testng] 08:32:26,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57d67e04 - End of configuration. [testng] [2024-10-17 08:32:28,208] [pool-1-thread-5] Initializing /data/thomas/t_test2001.tif: [testng] 08:32:28,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:32:28,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:32:28,209 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-17_08-32-28.log] [testng] 08:32:28,209 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3500229b - End of configuration. [testng] [2024-10-17 08:32:35,487] [pool-1-thread-4] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] 08:32:35,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:32:35,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:32:35,488 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-17_08-32-35.log] [testng] 08:32:35,489 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cebe74 - End of configuration. [testng] [2024-10-17 08:32:40,288] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] 08:32:40,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:32:40,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:32:40,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-17_08-32-40.log] [testng] 08:32:40,289 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51d43463 - End of configuration. [testng] [2024-10-17 08:32:46,663] [pool-1-thread-3] Used files list does not include base file [testng] [2024-10-17 08:32:46,665] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] 08:32:46,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:32:46,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:32:46,666 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-17_08-32-46.log] [testng] 08:32:46,666 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fc30f6b - End of configuration. [testng] [2024-10-17 08:33:14,779] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-10-17 08:33:33,061] [pool-1-thread-7] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-10-17 08:33:41,918] [pool-1-thread-10] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-10-17 08:33:48,784] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-10-17 08:33:53,898] [pool-1-thread-4] Used files list does not include base file [testng] [2024-10-17 08:33:53,899] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-10-17 08:34:01,492] [pool-1-thread-8] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-10-17 08:34:07,838] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-10-17 08:34:17,853] [pool-1-thread-5] Used files list does not include base file [testng] [2024-10-17 08:34:18,051] [pool-1-thread-9] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-10-17 08:34:40,150] [pool-1-thread-6] Initializing /data/david/tl4.tif: [testng] [2024-10-17 08:34:58,159] [pool-1-thread-12] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-10-17 08:35:04,546] [pool-1-thread-3] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-10-17 08:35:16,811] [pool-1-thread-10] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-10-17 08:35:23,472] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-10-17 08:35:29,251] [pool-1-thread-7] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-10-17 08:35:53,481] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-10-17 08:36:26,434] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-10-17 08:37:08,922] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-10-17 08:37:14,623] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-10-17 08:37:26,074] [pool-1-thread-2] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-10-17 08:37:35,458] [pool-1-thread-9] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-10-17 08:37:45,508] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-10-17 08:38:03,728] [pool-1-thread-8] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-10-17 08:38:10,272] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-10-17 08:38:18,331] [pool-1-thread-10] Used files list does not include base file [testng] [2024-10-17 08:38:21,621] [pool-1-thread-2] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-10-17 08:38:30,290] [pool-1-thread-12] Initializing /data/jerome/deconv.STK: [testng] [2024-10-17 08:38:35,904] [pool-1-thread-7] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-10-17 08:38:42,602] [pool-1-thread-9] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-10-17 08:39:02,969] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-10-17 08:39:11,454] [pool-1-thread-8] Used files list does not include base file [testng] [2024-10-17 08:39:25,167] [pool-1-thread-9] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-10-17 08:39:33,650] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-10-17 08:39:54,170] [pool-1-thread-10] Initializing /data/qa-16915/m-01.tif: [testng] [2024-10-17 08:40:04,919] [pool-1-thread-7] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-10-17 08:40:10,209] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-10-17 08:40:20,011] [pool-1-thread-6] Used files list does not include base file [testng] [2024-10-17 08:40:20,079] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-10-17 08:40:26,698] [pool-1-thread-5] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-10-17 08:40:34,448] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-17 08:40:44,340] [pool-1-thread-12] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-10-17 08:40:56,372] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-10-17 08:41:07,525] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-10-17 08:41:19,139] [pool-1-thread-7] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-10-17 08:41:33,009] [pool-1-thread-9] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-10-17 08:41:41,640] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-10-17 08:41:50,708] [pool-1-thread-10] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-10-17 08:42:25,837] [pool-1-thread-11] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-10-17 08:42:54,005] [pool-1-thread-2] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-10-17 08:43:08,630] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-10-17 08:43:34,630] [pool-1-thread-5] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-10-17 08:44:19,862] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-10-17 08:44:28,963] [pool-1-thread-7] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-10-17 08:46:21,757] [pool-1-thread-4] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-10-17 08:46:49,626] [pool-1-thread-9] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-10-17 08:46:59,170] [pool-1-thread-11] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-10-17 08:47:29,878] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-10-17 08:47:41,165] [pool-1-thread-8] Used files list does not include base file [testng] [2024-10-17 08:47:41,167] [pool-1-thread-6] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-10-17 08:47:58,873] [pool-1-thread-2] Initializing /data/josh/2101to800.stk: [testng] [2024-10-17 08:48:42,425] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-10-17 08:48:52,600] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-10-17 08:49:04,930] [pool-1-thread-5] Used files list does not include base file [testng] [2024-10-17 08:49:19,014] [pool-1-thread-1] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-10-17 08:49:25,636] [pool-1-thread-9] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-10-17 08:49:32,869] [pool-1-thread-6] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-10-17 08:49:44,096] [pool-1-thread-4] Initializing /data/thomas/test.tif: [testng] [2024-10-17 08:50:05,481] [pool-1-thread-1] Initializing 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[pool-1-thread-6] Initializing /data/josh/2101to600f.stk: [testng] [2024-10-17 08:55:47,050] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-10-17 08:56:03,233] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-17 08:56:19,145] [pool-1-thread-12] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-10-17 08:56:31,646] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-10-17 08:56:40,771] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-10-17 08:56:54,143] [pool-1-thread-5] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-10-17 08:57:08,218] [pool-1-thread-12] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-10-17 08:57:39,251] [pool-1-thread-5] Initializing /data/dave/Z Series.stk: [testng] [2024-10-17 08:57:56,272] [pool-1-thread-12] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-10-17 08:58:16,045] [pool-1-thread-9] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-10-17 08:58:58,865] [pool-1-thread-5] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-10-17 08:59:07,585] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-10-17 08:59:26,235] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-10-17 08:59:34,498] [pool-1-thread-1] Used files list does not include base file [testng] [2024-10-17 08:59:34,499] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-10-17 08:59:40,870] [pool-1-thread-12] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-10-17 09:00:03,534] [pool-1-thread-5] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-10-17 09:00:17,135] [pool-1-thread-3] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-10-17 09:00:21,968] [pool-1-thread-12] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-10-17 09:02:26,407] [pool-1-thread-5] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-10-17 09:02:53,290] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-10-17 09:03:18,954] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-10-17 09:03:38,286] [pool-1-thread-8] Used files list does not include base file [testng] [2024-10-17 09:05:11,760] [pool-1-thread-3] Initializing /data/samples/zseries.stk: [testng] [2024-10-17 09:05:51,769] [pool-1-thread-6] Initializing /data/samples/10xcalib.tif: [testng] [2024-10-17 09:05:57,559] [pool-1-thread-3] Initializing /data/samples/zserSixteen.stk: [testng] [2024-10-17 09:06:04,692] [pool-1-thread-1] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-10-17 09:06:08,868] [pool-1-thread-9] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-10-17 09:06:19,843] [pool-1-thread-5] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-10-17 09:06:24,358] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-10-17 09:06:31,378] [pool-1-thread-3] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-10-17 09:06:42,530] [pool-1-thread-9] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-10-17 09:06:46,263] [pool-1-thread-1] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-10-17 09:06:57,603] [pool-1-thread-3] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-10-17 09:07:05,570] [pool-1-thread-6] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-10-17 09:07:30,069] [pool-1-thread-6] Initializing /data/qa-16915/m-02.tif: [testng] [2024-10-17 09:07:40,664] [pool-1-thread-1] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-10-17 09:08:01,268] [pool-1-thread-9] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-10-17 09:08:07,934] [pool-1-thread-6] Initializing /data/steve/Experiment2.stk: [testng] [2024-10-17 09:08:10,842] [pool-1-thread-5] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-10-17 09:08:25,963] [pool-1-thread-5] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-10-17 09:08:35,408] [pool-1-thread-6] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-10-17 09:08:48,439] [pool-1-thread-1] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-10-17 09:08:52,927] [pool-1-thread-8] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-10-17 09:08:56,702] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-10-17 09:09:11,565] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-10-17 09:09:16,999] [pool-1-thread-9] Used files list does not include base file [testng] [2024-10-17 09:09:25,512] [pool-1-thread-8] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-10-17 09:09:29,518] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-10-17 09:09:44,042] [pool-1-thread-6] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-10-17 09:09:58,752] [pool-1-thread-5] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-10-17 09:10:11,036] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-10-17 09:10:41,011] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-10-17 09:10:45,090] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-10-17 09:10:59,517] [pool-1-thread-5] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-10-17 09:11:18,718] [pool-1-thread-5] Initializing /data/ascb/golgi marker.tif: [testng] [2024-10-17 09:11:36,464] [pool-1-thread-5] Initializing /data/samples/diatoms3d.stk: [testng] [2024-10-17 09:11:56,332] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-10-17 09:12:08,483] [pool-1-thread-8] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-10-17 09:12:22,808] [pool-1-thread-5] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-10-17 09:12:30,339] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-17 09:12:35,463] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-10-17 09:12:39,528] [pool-1-thread-6] Initializing /data/samples/10xcalib.stk: [testng] [2024-10-17 09:12:49,119] [pool-1-thread-8] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-10-17 09:12:58,472] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-10-17 09:13:05,880] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-10-17 09:13:07,987] [pool-1-thread-6] Initializing /data/qa-16887/m-01.tif: [testng] [2024-10-17 09:13:12,810] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-17 09:13:19,865] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-10-17 09:13:25,902] [pool-1-thread-12] Used files list does not include base file [testng] [2024-10-17 09:13:37,397] [pool-1-thread-6] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-10-17 09:13:41,443] [pool-1-thread-1] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-10-17 09:14:16,093] [pool-1-thread-9] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-10-17 09:15:09,071] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-10-17 09:15:24,882] [pool-1-thread-12] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-10-17 09:15:34,213] [pool-1-thread-5] Initializing /data/qa-16915/m-04.tif: [testng] [2024-10-17 09:15:42,419] [pool-1-thread-6] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-10-17 09:16:10,077] [pool-1-thread-5] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-10-17 09:16:15,109] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-10-17 09:16:20,014] [pool-1-thread-12] Initializing /data/alex/Selected FITC.stk: [testng] [2024-10-17 09:16:34,717] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-10-17 09:16:54,398] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-10-17 09:17:00,229] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-10-17 09:17:05,078] [pool-1-thread-12] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-10-17 09:17:35,269] [pool-1-thread-2] Initializing /data/steve/Experiment2.tif: [testng] [2024-10-17 09:17:44,861] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-10-17 09:18:07,642] [pool-1-thread-2] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-10-17 09:18:21,293] [pool-1-thread-5] Initializing /data/ascb/mt aim.tif: [testng] [2024-10-17 09:18:55,814] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-10-17 09:19:04,077] [pool-1-thread-5] Used files list does not include base file [testng] [2024-10-17 09:19:51,592] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-10-17 09:20:38,499] [pool-1-thread-12] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-10-17 09:21:11,766] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-10-17 09:21:42,718] [pool-1-thread-5] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-10-17 09:22:24,683] [pool-1-thread-12] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-10-17 09:23:32,583] [pool-1-thread-12] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-10-17 09:24:07,781] [pool-1-thread-12] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-10-17 09:24:45,449] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-17 09:25:13,967] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-10-17 09:25:25,229] [pool-1-thread-2] Used files list does not include base file [testng] [2024-10-17 09:25:56,064] [pool-1-thread-5] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-10-17 09:26:03,382] [pool-1-thread-12] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-10-17 09:26:34,351] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-10-17 09:26:48,720] [pool-1-thread-12] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-10-17 09:27:12,357] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-10-17 09:28:19,008] [pool-1-thread-12] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-10-17 09:28:49,312] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-10-17 09:28:57,110] [pool-1-thread-12] Initializing /data/cumol-test-series/23.001: [testng] [2024-10-17 09:29:33,226] [pool-1-thread-6] Initializing /data/josh/2101to600b.stk: [testng] [2024-10-17 09:30:24,229] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-10-17 09:30:34,307] [pool-1-thread-3] Used files list does not include base file [testng] [2024-10-17 09:30:57,910] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-10-17 09:32:05,444] [pool-1-thread-2] Initializing /data/samples/zser24.stk: [testng] [2024-10-17 09:32:17,597] [pool-1-thread-12] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-10-17 09:32:28,485] [pool-1-thread-2] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-10-17 09:33:34,967] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-10-17 09:33:45,457] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-10-17 09:33:50,431] [pool-1-thread-6] Initializing /data/grant/X.STK: [testng] [2024-10-17 09:34:03,889] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-10-17 09:34:25,275] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-10-17 09:34:35,117] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-10-17 09:34:43,612] [pool-1-thread-5] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-10-17 09:34:54,720] [pool-1-thread-2] Initializing /data/josh/2101to400astk.stk: [testng] [2024-10-17 09:35:29,777] [pool-1-thread-12] Initializing /data/josh/2101to600astk.stk: [testng] [2024-10-17 09:36:52,576] [pool-1-thread-6] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-10-17 09:37:14,714] [pool-1-thread-3] Initializing /data/josh/2101to600e.stk: [testng] [2024-10-17 09:37:46,794] [pool-1-thread-6] Initializing /data/qa-30870/220209_posit5.tif: Build was aborted Calling Pipeline was cancelled Finished: ABORTED