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Started by upstream project "BIOFORMATS-test-repo" build number 223 originally caused by: Started by upstream project "Trigger" build number 250 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins8799888265266241539.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35422_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 07:31:45,410 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 07:31:45,411 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 07:31:45,411 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:31:45,412 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:31:45,412 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:31:45,412 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:31:45,413 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:31:45,413 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:31:45,413 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:31:45,414 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:31:45,414 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:31:45,414 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:31:45,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:31:45,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:31:45,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:31:45,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:31:45,590 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:31:45,590 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:31:45,590 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:31:45,590 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:31:45,590 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 07:31:45,591 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 07:31:45,591 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 178 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-17 07:31:45,599] [main] java.version = 21 [testng] 07:31:45,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:31:45,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:31:45,641 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-17_07-31-45.log] [testng] 07:31:45,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-17 07:31:45,644] [main] testng.directory = /data [testng] [2024-10-17 07:31:45,644] [main] testng.configDirectory = /config [testng] [2024-10-17 07:31:45,652] [main] testng.multiplier = 1.0 [testng] [2024-10-17 07:31:45,652] [main] testng.in-memory = false [testng] [2024-10-17 07:31:45,652] [main] testng.allow-missing = false [testng] [2024-10-17 07:31:45,653] [main] user.language = en [testng] [2024-10-17 07:31:45,653] [main] user.country = ${user.country} [testng] [2024-10-17 07:31:45,653] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-17 07:51:39,033] [main] ---------------------------------------- [testng] [2024-10-17 07:51:39,033] [main] Total files: 268 [testng] [2024-10-17 07:51:39,033] [main] Scan time: 1193.38 s (4452 ms/file) [testng] [2024-10-17 07:51:39,033] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-17 08:22:12,002] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] 08:22:12,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:22:12,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:12,004 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-17_08-22-12.log] [testng] 08:22:12,005 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c236d7a - End of configuration. [testng] [2024-10-17 08:22:21,673] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] 08:22:21,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:22:21,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:21,674 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-17_08-22-21.log] [testng] 08:22:21,674 |-INFO in ch.qos.logback.core.sift.SiftProcessor@199d3c1e - End of configuration. [testng] [2024-10-17 08:22:23,899] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] 08:22:23,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:22:23,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:23,900 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-17_08-22-23.log] [testng] 08:22:23,900 |-INFO in ch.qos.logback.core.sift.SiftProcessor@246fa5e6 - End of configuration. [testng] [2024-10-17 08:22:28,635] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] 08:22:28,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:22:28,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:28,636 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-17_08-22-28.log] [testng] 08:22:28,637 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a395f29 - End of configuration. [testng] [2024-10-17 08:22:31,518] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] 08:22:31,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:22:31,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:31,519 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-17_08-22-31.log] [testng] 08:22:31,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@359c6323 - End of configuration. [testng] [2024-10-17 08:22:34,582] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] 08:22:34,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:22:34,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:34,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-17_08-22-34.log] [testng] 08:22:34,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@451ab8bc - End of configuration. [testng] [2024-10-17 08:22:37,689] [pool-1-thread-7] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] 08:22:37,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:22:37,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:37,689 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-17_08-22-37.log] [testng] 08:22:37,690 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f91ba31 - End of configuration. [testng] [2024-10-17 08:22:42,743] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] 08:22:42,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:22:42,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:42,744 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-17_08-22-42.log] [testng] 08:22:42,745 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3239c3fc - End of configuration. [testng] [2024-10-17 08:22:45,011] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] 08:22:45,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:22:45,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:45,012 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-17_08-22-45.log] [testng] 08:22:45,012 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31b89335 - End of configuration. [testng] [2024-10-17 08:22:48,288] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] 08:22:48,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:22:48,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:48,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-17_08-22-48.log] [testng] 08:22:48,289 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3aac926a - End of configuration. [testng] [2024-10-17 08:22:53,556] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] 08:22:53,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:22:53,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:53,560 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-17_08-22-53.log] [testng] 08:22:53,560 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7961fa1c - End of configuration. [testng] [2024-10-17 08:22:55,662] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] 08:22:55,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:22:55,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:55,663 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-17_08-22-55.log] [testng] 08:22:55,663 |-INFO in ch.qos.logback.core.sift.SiftProcessor@171558f6 - End of configuration. [testng] [2024-10-17 08:23:21,968] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-10-17 08:23:32,663] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-10-17 08:23:36,554] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-10-17 08:23:37,943] [pool-1-thread-8] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-10-17 08:23:48,439] [pool-1-thread-10] Initializing /data/steve/FITS/M13.fits: [testng] [2024-10-17 08:23:49,054] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-10-17 08:23:51,673] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-10-17 08:23:55,093] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-10-17 08:24:10,268] [pool-1-thread-10] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-10-17 08:24:17,146] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-10-17 08:24:21,178] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-10-17 08:24:23,743] [pool-1-thread-9] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-10-17 08:24:26,447] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-10-17 08:24:30,777] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-10-17 08:24:38,878] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-10-17 08:24:41,816] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-10-17 08:24:44,260] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-10-17 08:24:57,778] [pool-1-thread-6] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-10-17 08:24:59,143] [pool-1-thread-10] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-10-17 08:25:10,979] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-10-17 08:25:14,613] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-10-17 08:25:19,761] [pool-1-thread-8] Initializing /data/steve/FITS/M51.fits: [testng] [2024-10-17 08:25:20,451] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-10-17 08:25:31,439] [pool-1-thread-9] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-10-17 08:25:41,376] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-10-17 08:25:42,741] [pool-1-thread-4] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-10-17 08:25:52,413] [pool-1-thread-2] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-10-17 08:25:57,482] [pool-1-thread-8] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-10-17 08:26:06,093] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-10-17 08:26:09,663] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-10-17 08:26:19,396] [pool-1-thread-12] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-10-17 08:26:29,944] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-10-17 08:26:33,587] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-10-17 08:26:43,680] [pool-1-thread-10] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-10-17 08:26:49,825] [pool-1-thread-2] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-10-17 08:26:55,603] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-10-17 08:27:04,275] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-10-17 08:27:07,814] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-10-17 08:27:12,669] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-10-17 08:27:22,058] [pool-1-thread-9] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-10-17 08:27:32,683] [pool-1-thread-4] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-10-17 08:27:41,593] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-10-17 08:27:46,112] [pool-1-thread-1] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-10-17 08:27:48,913] [pool-1-thread-10] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-10-17 08:27:51,142] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-10-17 08:28:01,009] [pool-1-thread-12] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-10-17 08:28:11,302] [pool-1-thread-3] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-10-17 08:28:21,241] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-10-17 08:28:24,444] [pool-1-thread-11] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-10-17 08:28:33,736] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-10-17 08:28:37,555] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-10-17 08:28:40,650] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-10-17 08:28:45,446] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-10-17 08:28:50,459] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-10-17 08:28:54,272] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-10-17 08:28:57,530] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-10-17 08:29:03,749] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-10-17 08:29:13,668] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-10-17 08:29:15,295] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-10-17 08:29:16,465] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-10-17 08:29:17,906] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-10-17 08:29:20,679] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-10-17 08:29:23,459] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-10-17 08:29:35,345] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-10-17 08:29:37,476] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-10-17 08:29:40,798] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-10-17 08:29:42,849] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-10-17 08:29:51,584] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-10-17 08:29:53,311] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-10-17 08:29:59,553] [pool-1-thread-10] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-10-17 08:30:02,362] [pool-1-thread-7] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-10-17 08:30:09,837] [pool-1-thread-3] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-10-17 08:30:18,033] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-10-17 08:30:21,138] [pool-1-thread-4] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-10-17 08:30:23,643] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-10-17 08:30:31,527] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-10-17 08:30:34,355] [pool-1-thread-9] Initializing /data/steve/FITS/M104.fits: [testng] [2024-10-17 08:30:35,215] [pool-1-thread-7] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-10-17 08:30:42,524] [pool-1-thread-8] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-10-17 08:30:44,846] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-10-17 08:30:47,441] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-10-17 08:30:55,308] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-10-17 08:30:59,238] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-10-17 08:31:02,073] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-10-17 08:31:05,210] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-10-17 08:31:06,732] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-10-17 08:31:14,937] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-10-17 08:31:16,893] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-10-17 08:31:17,545] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-10-17 08:31:23,487] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-10-17 08:31:26,886] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-10-17 08:31:28,908] [pool-1-thread-8] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-10-17 08:31:38,292] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-10-17 08:31:42,341] [pool-1-thread-1] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-10-17 08:31:44,854] [pool-1-thread-3] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-10-17 08:31:52,121] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-10-17 08:31:52,895] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-10-17 08:31:54,907] [pool-1-thread-7] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-10-17 08:31:56,273] [pool-1-thread-12] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-10-17 08:32:02,015] [pool-1-thread-2] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-10-17 08:32:07,148] [pool-1-thread-4] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-10-17 08:32:11,284] [pool-1-thread-10] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-10-17 08:32:17,750] [pool-1-thread-9] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-10-17 08:32:24,812] [pool-1-thread-6] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-10-17 08:32:28,625] [pool-1-thread-1] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-10-17 08:32:31,704] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-10-17 08:32:41,167] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-10-17 08:32:51,574] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-10-17 08:32:53,574] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-10-17 08:32:56,734] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-10-17 08:33:08,930] [pool-1-thread-6] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-10-17 08:33:15,121] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-10-17 08:33:25,515] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-10-17 08:33:36,320] [pool-1-thread-12] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-10-17 08:33:39,908] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-10-17 08:33:42,977] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-10-17 08:33:52,281] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-10-17 08:33:54,339] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-10-17 08:33:57,545] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-10-17 08:34:02,108] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-10-17 08:34:06,269] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-10-17 08:34:08,616] [pool-1-thread-5] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-10-17 08:34:12,231] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-10-17 08:34:22,599] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-10-17 08:34:26,179] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-10-17 08:34:28,470] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-10-17 08:34:31,691] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-10-17 08:34:43,662] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-10-17 08:34:46,678] [pool-1-thread-9] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-10-17 08:34:52,578] [pool-1-thread-4] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-10-17 08:35:02,278] [pool-1-thread-1] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-10-17 08:35:03,492] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-10-17 08:35:09,320] [pool-1-thread-6] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-10-17 08:35:18,137] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-10-17 08:35:20,166] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-10-17 08:35:22,036] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-10-17 08:35:24,348] [pool-1-thread-8] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-10-17 08:35:28,107] [pool-1-thread-12] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-10-17 08:35:32,894] [pool-1-thread-1] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-10-17 08:35:43,841] [pool-1-thread-9] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-10-17 08:35:47,879] [pool-1-thread-11] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-10-17 08:36:01,840] [pool-1-thread-10] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-10-17 08:36:11,361] [pool-1-thread-3] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-10-17 08:36:22,204] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-10-17 08:36:23,503] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-10-17 08:36:24,972] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-10-17 08:36:30,824] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-10-17 08:36:34,638] [pool-1-thread-8] Initializing /data/steve/SBIG/M81 M 40s: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 65 minutes 44 seconds Finished: SUCCESS