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Started by upstream project "BIOFORMATS-test-repo" build number 223 originally caused by: Started by upstream project "Trigger" build number 250 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins2175331600385746167.sh + '[' ultraview = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35424_merge_ci -v /uod/idr/repos/curated/ultraview:/data -v /uod/idr-scratch/merge-ci/curated/ultraview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 08:37:30,046 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:37:30,048 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 08:37:30,048 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:37:30,049 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:37:30,049 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:37:30,049 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:37:30,050 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:37:30,050 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:37:30,050 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:37:30,051 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:37:30,051 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:37:30,051 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:37:30,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:37:30,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:37:30,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:37:30,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:37:30,223 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:37:30,223 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:37:30,223 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:37:30,224 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:37:30,224 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 08:37:30,225 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 08:37:30,225 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 175 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-17 08:37:30,233] [main] java.version = 21 [testng] 08:37:30,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:37:30,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:37:30,274 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-17_08-37-30.log] [testng] 08:37:30,275 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-17 08:37:30,277] [main] testng.directory = /data [testng] [2024-10-17 08:37:30,277] [main] testng.configDirectory = /config [testng] [2024-10-17 08:37:30,285] [main] testng.multiplier = 1.0 [testng] [2024-10-17 08:37:30,285] [main] testng.in-memory = false [testng] [2024-10-17 08:37:30,285] [main] testng.allow-missing = false [testng] [2024-10-17 08:37:30,285] [main] user.language = en [testng] [2024-10-17 08:37:30,285] [main] user.country = ${user.country} [testng] [2024-10-17 08:37:30,286] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-17 08:38:52,399] [main] ---------------------------------------- [testng] [2024-10-17 08:38:52,399] [main] Total files: 19 [testng] [2024-10-17 08:38:52,399] [main] Scan time: 82.113 s (4321 ms/file) [testng] [2024-10-17 08:38:52,400] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-17 08:40:29,854] [pool-1-thread-1] Initializing /data/chad/UltraViewExamples/DIC_200820080724115245/CHAD200820080724115245.HTM: [testng] 08:40:29,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:40:29,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:29,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-17_08-40-29.log] [testng] 08:40:29,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48610acb - End of configuration. [testng] [2024-10-17 08:40:35,574] [pool-1-thread-12] Initializing /data/chad/DIC/EZRA200820080626102637.HTM: [testng] 08:40:35,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:40:35,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:35,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-17_08-40-35.log] [testng] 08:40:35,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a3650b6 - End of configuration. [testng] [2024-10-17 08:40:41,616] [pool-1-thread-11] Initializing /data/chad/20080107130850/IREN200820080107130850.HTM: [testng] 08:40:41,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:40:41,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:41,618 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-17_08-40-41.log] [testng] 08:40:41,618 |-INFO in ch.qos.logback.core.sift.SiftProcessor@215205cd - End of configuration. [testng] [2024-10-17 08:40:45,784] [pool-1-thread-10] Initializing /data/chad/UltraViewExample/doesNot/CHAD200920090331181253.HTM: [testng] 08:40:45,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:40:45,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:45,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-17_08-40-45.log] [testng] 08:40:45,785 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7aede80f - End of configuration. [testng] [2024-10-17 08:40:49,629] [pool-1-thread-9] Initializing /data/todd/movement-1.htm: [testng] 08:40:49,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:40:49,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:49,630 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-17_08-40-49.log] [testng] 08:40:49,630 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29fa9e9e - End of configuration. [testng] [2024-10-17 08:40:54,634] [pool-1-thread-8] Initializing /data/kate/GreenRed6Z3T/GreenRed5Z5T.htm: [testng] 08:40:54,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:40:54,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:54,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-17_08-40-54.log] [testng] 08:40:54,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5517ae99 - End of configuration. [testng] [2024-10-17 08:40:58,606] [pool-1-thread-7] Initializing /data/kate/GreenRedNoZ3T/GreenRedNoZ5T.htm: [testng] 08:40:58,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:40:58,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:58,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-17_08-40-58.log] [testng] 08:40:58,607 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44a8ec3b - End of configuration. [testng] [2024-10-17 08:41:01,965] [pool-1-thread-6] Initializing /data/kate/GreenRedNoZnoT/GreenRedNoZNoT.htm: [testng] 08:41:01,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:41:01,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:41:01,966 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-17_08-41-01.log] [testng] 08:41:01,966 |-INFO in ch.qos.logback.core.sift.SiftProcessor@590dbcd2 - End of configuration. [testng] [2024-10-17 08:41:07,075] [pool-1-thread-5] Initializing /data/chad/DIC_IREN200820080107120042/IREN200820080107120042.HTM: [testng] 08:41:07,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:41:07,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:41:07,075 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-17_08-41-07.log] [testng] 08:41:07,076 |-INFO in ch.qos.logback.core.sift.SiftProcessor@776939b7 - End of configuration. [testng] [2024-10-17 08:41:11,319] [pool-1-thread-4] Initializing /data/chad/UltraViewExamples/Works/CHAD200820080724121453.HTM: [testng] 08:41:11,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:41:11,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:41:11,320 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-17_08-41-11.log] [testng] 08:41:11,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cf38e67 - End of configuration. [testng] [2024-10-17 08:41:16,520] [pool-1-thread-3] Initializing /data/kate/Neutrophils#18/tiffs/Neutrophils#18.htm: [testng] 08:41:16,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:41:16,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:41:16,521 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-17_08-41-16.log] [testng] 08:41:16,521 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62064384 - End of configuration. [testng] [2024-10-17 08:41:21,165] [pool-1-thread-2] Initializing /data/kate/Neutrophils#18/Neutrophils#18.htm: [testng] 08:41:21,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:41:21,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:41:21,166 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-17_08-41-21.log] [testng] 08:41:21,167 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b1a18f - End of configuration. [testng] [2024-10-17 08:43:30,451] [pool-1-thread-1] Initializing /data/kate/GreenOnlyNoZnoT/GreenOnlyNoZnoT.htm: [testng] [2024-10-17 08:43:36,386] [pool-1-thread-12] Initializing /data/chad/UltraViewExample/works/CHAD200920090331181355.HTM: [testng] [2024-10-17 08:43:41,335] [pool-1-thread-5] Initializing /data/kate/GreenRed6ZnoT/GreenRed5ZNoT.htm: [testng] [2024-10-17 08:44:19,070] [pool-1-thread-9] Initializing /data/chad/UltraViewSamples/series 3/RAJE200820080619090142.HTM: [testng] [2024-10-17 08:44:55,102] [pool-1-thread-6] Initializing /data/chad/UltraViewExamples/Bug/CHAD200820080724120123.HTM: [testng] [2024-10-17 08:45:52,604] [pool-1-thread-7] Initializing /data/helio/2 copy Cnn g-tubGFP 111221#20/2 copy Cnn g-tubGFP 111221#20.htm: Build was aborted Calling Pipeline was cancelled Finished: ABORTED