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Started by upstream project "BIOFORMATS-test-repo" build number 225 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins7642820795842094329.sh + '[' gatan = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35434_merge_ci -v /uod/idr/repos/curated/gatan:/data -v /uod/idr-scratch/merge-ci/curated/gatan:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 11:09:06,345 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 11:09:06,347 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 11:09:06,347 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:09:06,348 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:09:06,348 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:09:06,348 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:09:06,349 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:09:06,349 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:09:06,349 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:09:06,350 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:09:06,350 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:09:06,350 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:09:06,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:09:06,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:09:06,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:09:06,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:09:06,526 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:09:06,526 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:09:06,526 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:09:06,527 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:09:06,527 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 11:09:06,528 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 11:09:06,528 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 179 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-17 11:09:06,536] [main] java.version = 21 [testng] 11:09:06,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:09:06,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:09:06,578 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-17_11-09-06.log] [testng] 11:09:06,579 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-17 11:09:06,581] [main] testng.directory = /data [testng] [2024-10-17 11:09:06,581] [main] testng.configDirectory = /config [testng] [2024-10-17 11:09:06,589] [main] testng.multiplier = 1.0 [testng] [2024-10-17 11:09:06,589] [main] testng.in-memory = false [testng] [2024-10-17 11:09:06,589] [main] testng.allow-missing = false [testng] [2024-10-17 11:09:06,589] [main] user.language = en [testng] [2024-10-17 11:09:06,590] [main] user.country = ${user.country} [testng] [2024-10-17 11:09:06,590] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-17 11:09:18,147] [main] ---------------------------------------- [testng] [2024-10-17 11:09:18,147] [main] Total files: 103 [testng] [2024-10-17 11:09:18,147] [main] Scan time: 11.557 s (112 ms/file) [testng] [2024-10-17 11:09:18,147] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 98 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-17 11:10:48,373] [pool-1-thread-1] Initializing /data/jay/samples/APC2a-e4.tif: [testng] 11:10:48,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:10:48,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:48,375 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-17_11-10-48.log] [testng] 11:10:48,375 |-INFO in ch.qos.logback.core.sift.SiftProcessor@464f840a - End of configuration. [testng] [2024-10-17 11:10:50,523] [pool-1-thread-12] Initializing /data/public/imagesc-36590/SmallMontage0002.dm4: [testng] 11:10:50,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:10:50,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:50,524 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-17_11-10-50.log] [testng] 11:10:50,524 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c90db86 - End of configuration. [testng] [2024-10-17 11:10:50,831] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0000.dm4: [testng] 11:10:50,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:10:50,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:50,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-17_11-10-50.log] [testng] 11:10:50,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65752038 - End of configuration. [testng] [2024-10-17 11:10:51,169] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0005.dm4: [testng] 11:10:51,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:10:51,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:51,170 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-17_11-10-51.log] [testng] 11:10:51,170 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a912c99 - End of configuration. [testng] [2024-10-17 11:10:51,535] [pool-1-thread-9] Initializing /data/public/imagesc-36590/SmallMontage0006.dm4: [testng] 11:10:51,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:10:51,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:51,536 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-17_11-10-51.log] [testng] 11:10:51,537 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79bf7af0 - End of configuration. [testng] [2024-10-17 11:10:51,924] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0015.dm4: [testng] 11:10:51,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:10:51,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:51,924 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-17_11-10-51.log] [testng] 11:10:51,925 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b59108f - End of configuration. [testng] [2024-10-17 11:10:52,262] [pool-1-thread-7] Initializing /data/jay/biosamplefullframetif.tif: [testng] 11:10:52,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:10:52,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:52,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-17_11-10-52.log] [testng] 11:10:52,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e6ed29e - End of configuration. [testng] [2024-10-17 11:10:55,755] [pool-1-thread-6] Initializing /data/jay/Carbon.34.dm3: [testng] 11:10:55,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:10:55,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:55,756 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-17_11-10-55.log] [testng] 11:10:55,756 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66f6340e - End of configuration. [testng] [2024-10-17 11:10:56,488] [pool-1-thread-5] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.dm3: [testng] 11:10:56,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:10:56,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:56,489 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-17_11-10-56.log] [testng] 11:10:56,490 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e014271 - End of configuration. [testng] [2024-10-17 11:10:57,084] [pool-1-thread-4] Initializing /data/public/EMPIAR/EMPIAR-10013/BGal_000438_frames.dm4: [testng] 11:10:57,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:10:57,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:57,085 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-17_11-10-57.log] [testng] 11:10:57,086 |-INFO in ch.qos.logback.core.sift.SiftProcessor@675de9b8 - End of configuration. [testng] [2024-10-17 11:10:57,614] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0007.dm4: [testng] 11:10:57,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:10:57,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:57,615 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-17_11-10-57.log] [testng] 11:10:57,615 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2525044f - End of configuration. [testng] [2024-10-17 11:10:58,078] [pool-1-thread-2] Initializing /data/jayne/AM-2/MonGb3-S3.dm3: [testng] 11:10:58,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:10:58,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:58,079 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-17_11-10-58.log] [testng] 11:10:58,079 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f3b47cc - End of configuration. [testng] [2024-10-17 11:11:04,179] [pool-1-thread-12] Initializing /data/jay/recAmag6500dm.dm3: [testng] [2024-10-17 11:11:04,730] [pool-1-thread-9] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0046.dm4: [testng] [2024-10-17 11:11:06,779] [pool-1-thread-11] Initializing /data/jayne/AM-2/MonGb2-S9.dm3: [testng] [2024-10-17 11:11:07,391] [pool-1-thread-3] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-1020x1020.tif: [testng] [2024-10-17 11:11:10,511] [pool-1-thread-6] Initializing /data/public/imagesc-36590/SmallMontage0004.dm4: [testng] [2024-10-17 11:11:11,145] [pool-1-thread-5] Initializing /data/jay/DMtest.dm3: [testng] [2024-10-17 11:11:11,822] [pool-1-thread-10] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0049.dm4: [testng] [2024-10-17 11:11:12,757] [pool-1-thread-4] Initializing /data/jay/dnasample.tif: [testng] [2024-10-17 11:11:14,991] [pool-1-thread-8] Initializing /data/jay/smallerfile.dm3: [testng] [2024-10-17 11:11:16,078] [pool-1-thread-2] Initializing /data/qa-7642/8.dm4: [testng] [2024-10-17 11:11:20,834] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0009.dm4: [testng] [2024-10-17 11:11:21,650] [pool-1-thread-11] Initializing /data/qa-21647/Sample2_L1-0002.dm4: [testng] [2024-10-17 11:11:22,332] [pool-1-thread-8] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-363.dm3: [testng] [2024-10-17 11:11:22,955] [pool-1-thread-6] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-10-17 11:11:25,243] [pool-1-thread-1] Initializing /data/melissa/annotation-test.tif: [testng] [2024-10-17 11:11:27,681] [pool-1-thread-7] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0053.dm4: [testng] [2024-10-17 11:11:28,335] [pool-1-thread-5] Initializing /data/public/imagesc-36590/SmallMontage0001.dm4: [testng] [2024-10-17 11:11:29,440] [pool-1-thread-2] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0050.dm4: [testng] [2024-10-17 11:11:31,012] [pool-1-thread-12] Initializing /data/jayne/AM-2/MonGb3-S1.dm3: [testng] [2024-10-17 11:11:31,330] [pool-1-thread-9] Initializing /data/jay/samples/APC2a-e3.dm3: [testng] [2024-10-17 11:11:32,036] [pool-1-thread-11] Initializing /data/imagesc-3719/Prefix_BSE_slice_0001.dm4: [testng] [2024-10-17 11:11:35,828] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0003.dm4: [testng] [2024-10-17 11:11:36,650] [pool-1-thread-5] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0047.dm4: [testng] [2024-10-17 11:11:37,501] [pool-1-thread-3] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-10-17 11:11:41,036] [pool-1-thread-10] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0048.dm4: [testng] [2024-10-17 11:11:42,667] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0008.dm4: [testng] [2024-10-17 11:11:44,760] [pool-1-thread-8] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-256x256.tif: [testng] [2024-10-17 11:11:47,884] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0016.dm4: [testng] [2024-10-17 11:11:48,312] [pool-1-thread-12] Initializing /data/jay/samples/APC2a-e4.dm3: [testng] [2024-10-17 11:11:51,498] [pool-1-thread-7] Initializing /data/jay/DMtest2.dm3: [testng] [2024-10-17 11:11:52,179] [pool-1-thread-2] Initializing /data/jayne/AM-2/MonGb2-S8.dm3: [testng] [2024-10-17 11:11:53,276] [pool-1-thread-11] Initializing /data/ofra/lowloss.dm3: [testng] [2024-10-17 11:11:53,969] [pool-1-thread-1] Initializing /data/samples/test-tiles.dm3: [testng] [2024-10-17 11:11:55,466] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0017.dm4: [testng] [2024-10-17 11:11:56,930] [pool-1-thread-12] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362-smaller.tif: [testng] [2024-10-17 11:12:00,415] [pool-1-thread-4] Initializing /data/jay/samples/APC2a-e5.dm3: [testng] [2024-10-17 11:12:00,791] [pool-1-thread-6] Initializing /data/jay/dnasample1.dm3: [testng] [2024-10-17 11:12:01,245] [pool-1-thread-5] Initializing /data/jay/samples/APC2a-e3.tif: [testng] [2024-10-17 11:12:03,942] [pool-1-thread-7] Initializing /data/public/imagesc-36590/SmallMontage0003.dm4: [testng] [2024-10-17 11:12:05,054] [pool-1-thread-11] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.dm3: [testng] [2024-10-17 11:12:05,858] [pool-1-thread-2] Initializing /data/public/imagesc-36590/SmallMontage0000.dm4: [testng] [2024-10-17 11:12:07,117] [pool-1-thread-10] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-10-17 11:12:13,455] [pool-1-thread-1] Initializing /data/nuno/Prefix_3VBSED_stack_30_slice_0290.dm3: [testng] [2024-10-17 11:12:14,832] [pool-1-thread-9] Initializing /data/thorsten/60kx_HAADF_03.dm3: [testng] [2024-10-17 11:12:18,629] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0018.dm4: [testng] [2024-10-17 11:12:19,543] [pool-1-thread-8] Initializing /data/public/imagesc-36590/SmallMontage0005.dm4: [testng] [2024-10-17 11:12:20,658] [pool-1-thread-4] Initializing /data/jay/biosamplefullframe.dm3: [testng] [2024-10-17 11:12:21,942] [pool-1-thread-6] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-128x128.tif: [testng] [2024-10-17 11:12:28,972] [pool-1-thread-2] Initializing /data/public/imagesc-36590/SmallMontage0008.dm4: [testng] [2024-10-17 11:12:29,926] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0013.dm4: [testng] [2024-10-17 11:12:31,693] [pool-1-thread-11] Initializing /data/nuno/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-10-17 11:12:37,490] [pool-1-thread-8] Initializing /data/imagesc-3719/Heart_BSE_slice_0019.dm4: [testng] [2024-10-17 11:12:38,602] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0012.dm4: [testng] [2024-10-17 11:12:39,699] [pool-1-thread-3] Initializing /data/qa-8007/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-10-17 11:12:42,267] [pool-1-thread-1] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0052.dm4: [testng] [2024-10-17 11:12:43,622] [pool-1-thread-12] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-10-17 11:12:50,486] [pool-1-thread-2] Initializing /data/jay/samples/APC2a-e5.tif: [testng] [2024-10-17 11:13:03,157] [pool-1-thread-5] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0045.dm4: [testng] [2024-10-17 11:13:05,404] [pool-1-thread-7] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.tif: [testng] [2024-10-17 11:13:26,218] [pool-1-thread-4] Initializing /data/jay/camtest1.dm3: [testng] [2024-10-17 11:13:33,326] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0002.dm4: [testng] [2024-10-17 11:13:42,945] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0010.dm4: [testng] [2024-10-17 11:13:47,306] [pool-1-thread-3] Initializing /data/chip/Nanogold-1.dm3: [testng] [2024-10-17 11:13:50,631] [pool-1-thread-9] Initializing /data/melissa/annotation-test.dm3: [testng] [2024-10-17 11:13:53,583] [pool-1-thread-8] Initializing /data/jay/recAmaghi.dm3: [testng] [2024-10-17 11:13:59,642] [pool-1-thread-1] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-96x96.tif: [testng] [2024-10-17 11:14:07,791] [pool-1-thread-6] Initializing /data/public/imagesc-36590/SmallMontage0007.dm4: [testng] [2024-10-17 11:14:13,576] [pool-1-thread-11] Initializing /data/samples/mode-metadata/mode_format_test.dm3: [testng] [2024-10-17 11:14:14,773] [pool-1-thread-4] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-799x799.tif: [testng] [2024-10-17 11:14:22,997] [pool-1-thread-9] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.dm4: [testng] [2024-10-17 11:14:24,384] [pool-1-thread-10] Initializing /data/qa-11392/Example_Gatan_File.dm4: [testng] [2024-10-17 11:14:25,738] [pool-1-thread-8] Initializing /data/jay/ViewDMtest.dm3: [testng] [2024-10-17 11:14:27,168] [pool-1-thread-3] Initializing /data/jayne/AM-2/MonGb2-S7.dm3: [testng] [2024-10-17 11:14:28,312] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0019.dm4: [testng] [2024-10-17 11:14:30,800] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0004.dm4: [testng] [2024-10-17 11:14:34,654] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0014.dm4: [testng] [2024-10-17 11:14:35,780] [pool-1-thread-2] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-10-17 11:14:39,894] [pool-1-thread-12] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0051.dm4: [testng] [2024-10-17 11:14:40,818] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0001.dm4: [testng] [2024-10-17 11:14:42,457] [pool-1-thread-8] Initializing /data/qa-21761/example.dm4: [testng] [2024-10-17 11:14:43,361] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0006.dm4: [testng] [2024-10-17 11:14:44,655] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0011.dm4: [testng] [2024-10-17 11:14:45,474] [pool-1-thread-3] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-480x480.tif: [testng] [2024-10-17 11:14:49,564] [pool-1-thread-10] Initializing /data/jay/graphitedm3.dm3: [testng] [2024-10-17 11:14:51,214] [pool-1-thread-6] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-10-17 11:14:55,266] [pool-1-thread-1] Initializing /data/ofra/Co on INT 28-12-10.11.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 5194, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 27 seconds Finished: SUCCESS