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Started by upstream project "BIOFORMATS-test-repo" build number 225 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins7775308534972237404.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35442_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 11:09:24,201 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 11:09:24,202 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 11:09:24,202 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:09:24,203 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:09:24,204 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:09:24,204 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:09:24,204 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:09:24,204 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:09:24,205 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:09:24,206 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:09:24,206 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:09:24,206 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:09:24,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:09:24,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:09:24,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:09:24,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:09:24,400 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:09:24,401 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:09:24,401 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:09:24,401 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:09:24,401 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 11:09:24,402 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 11:09:24,402 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 197 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-17 11:09:24,411] [main] java.version = 21 [testng] 11:09:24,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:09:24,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:09:24,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-17_11-09-24.log] [testng] 11:09:24,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-17 11:09:24,459] [main] testng.directory = /data [testng] [2024-10-17 11:09:24,459] [main] testng.configDirectory = /config [testng] [2024-10-17 11:09:24,467] [main] testng.multiplier = 1.0 [testng] [2024-10-17 11:09:24,468] [main] testng.in-memory = false [testng] [2024-10-17 11:09:24,468] [main] testng.allow-missing = false [testng] [2024-10-17 11:09:24,468] [main] user.language = en [testng] [2024-10-17 11:09:24,468] [main] user.country = ${user.country} [testng] [2024-10-17 11:09:24,468] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-17 11:10:02,589] [main] ---------------------------------------- [testng] [2024-10-17 11:10:02,589] [main] Total files: 315 [testng] [2024-10-17 11:10:02,589] [main] Scan time: 38.121 s (121 ms/file) [testng] [2024-10-17 11:10:02,590] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 192 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-17 11:45:12,309] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] 11:45:12,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:45:12,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:45:12,311 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-17_11-45-12.log] [testng] 11:45:12,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a8cd4f0 - End of configuration. [testng] [2024-10-17 11:45:19,891] [pool-1-thread-12] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] 11:45:19,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:45:19,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:45:19,892 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-17_11-45-19.log] [testng] 11:45:19,892 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f884dc4 - End of configuration. [testng] [2024-10-17 11:45:21,961] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] 11:45:21,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:45:21,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:45:21,962 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-17_11-45-21.log] [testng] 11:45:21,962 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a65c22d - End of configuration. [testng] [2024-10-17 11:45:26,432] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] 11:45:26,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:45:26,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:45:26,432 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-17_11-45-26.log] [testng] 11:45:26,433 |-INFO in ch.qos.logback.core.sift.SiftProcessor@171f709e - End of configuration. [testng] [2024-10-17 11:45:30,598] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] 11:45:30,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:45:30,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:45:30,599 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-17_11-45-30.log] [testng] 11:45:30,599 |-INFO in ch.qos.logback.core.sift.SiftProcessor@255c9c8d - End of configuration. [testng] [2024-10-17 11:45:32,448] [pool-1-thread-8] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] 11:45:32,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:45:32,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:45:32,449 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-17_11-45-32.log] [testng] 11:45:32,450 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7abd63e8 - End of configuration. [testng] [2024-10-17 11:45:35,362] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] 11:45:35,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:45:35,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:45:35,363 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-17_11-45-35.log] [testng] 11:45:35,363 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38e2ce2f - End of configuration. [testng] [2024-10-17 11:45:36,656] [pool-1-thread-6] Initializing /data/qa-17293/Clipboard.tif: [testng] 11:45:36,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:45:36,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:45:36,657 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-17_11-45-36.log] [testng] 11:45:36,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19aca356 - End of configuration. [testng] [2024-10-17 11:45:40,558] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] 11:45:40,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:45:40,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:45:40,559 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-17_11-45-40.log] [testng] 11:45:40,559 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c84b6cf - End of configuration. [testng] [2024-10-17 11:45:44,136] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] 11:45:44,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:45:44,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:45:44,137 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-17_11-45-44.log] [testng] 11:45:44,137 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2339e193 - End of configuration. [testng] [2024-10-17 11:45:49,399] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] 11:45:49,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:45:49,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:45:49,400 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-17_11-45-49.log] [testng] 11:45:49,400 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f468f66 - End of configuration. [testng] [2024-10-17 11:45:51,889] [pool-1-thread-2] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] 11:45:51,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:45:51,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:45:51,890 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-17_11-45-51.log] [testng] 11:45:51,890 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fe8e825 - End of configuration. [testng] [2024-10-17 11:46:16,143] [pool-1-thread-3] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-10-17 11:46:20,539] [pool-1-thread-5] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-10-17 11:46:24,831] [pool-1-thread-2] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-10-17 11:46:26,884] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-10-17 11:46:29,680] [pool-1-thread-10] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-10-17 11:46:32,360] [pool-1-thread-6] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-10-17 11:46:35,118] [pool-1-thread-4] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-10-17 11:46:37,412] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-10-17 11:46:40,737] [pool-1-thread-9] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-10-17 11:46:58,801] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-10-17 11:47:01,987] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-10-17 11:47:10,188] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-10-17 11:47:15,135] [pool-1-thread-11] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-10-17 11:47:24,222] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-10-17 11:47:30,115] [pool-1-thread-12] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-10-17 11:47:37,005] [pool-1-thread-10] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-10-17 11:47:52,018] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-10-17 11:47:58,683] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2024-10-17 11:48:04,323] [pool-1-thread-9] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-10-17 11:48:11,134] [pool-1-thread-11] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-10-17 11:48:26,166] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info: [testng] [2024-10-17 11:48:44,436] [pool-1-thread-12] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-10-17 11:48:51,232] [pool-1-thread-7] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-10-17 11:49:01,282] [pool-1-thread-4] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-10-17 11:49:10,422] [pool-1-thread-3] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-10-17 11:49:10,568] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-10-17 11:49:22,627] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-10-17 11:49:30,012] [pool-1-thread-5] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-10-17 11:49:37,251] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-10-17 11:49:44,892] [pool-1-thread-4] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-10-17 11:49:47,418] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-10-17 11:49:58,004] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-10-17 11:50:03,688] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2024-10-17 11:50:17,012] [pool-1-thread-12] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-10-17 11:50:19,809] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-10-17 11:50:22,933] [pool-1-thread-9] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-10-17 11:50:26,132] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-10-17 11:50:36,590] [pool-1-thread-3] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-10-17 11:50:43,062] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-10-17 11:50:52,956] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-10-17 11:50:58,763] [pool-1-thread-4] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-10-17 11:51:05,844] [pool-1-thread-12] Initializing 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[2024-10-17 11:53:06,485] [pool-1-thread-9] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-10-17 11:53:20,674] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-10-17 11:53:23,455] [pool-1-thread-5] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-10-17 11:53:27,054] [pool-1-thread-4] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-10-17 11:53:31,637] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-10-17 11:53:52,728] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-10-17 11:54:01,057] [pool-1-thread-8] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-10-17 11:54:24,296] [pool-1-thread-2] Initializing /data/olympus/2021-04-20/overview 2 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Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-10-17 11:56:55,651] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-10-17 11:57:01,151] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-10-17 11:57:07,846] [pool-1-thread-10] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-10-17 11:57:10,805] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-10-17 11:57:16,283] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-10-17 11:57:35,283] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-10-17 11:57:47,067] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-10-17 11:57:49,502] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2024-10-17 11:57:56,432] [pool-1-thread-5] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-10-17 11:58:26,142] [pool-1-thread-12] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-10-17 11:58:31,116] [pool-1-thread-9] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-10-17 11:58:38,789] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-10-17 11:58:53,287] [pool-1-thread-12] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-10-17 11:58:58,532] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-10-17 11:59:28,762] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-10-17 11:59:31,866] [pool-1-thread-10] Initializing 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[pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-10-17 12:04:57,046] [pool-1-thread-11] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-10-17 12:05:11,467] [pool-1-thread-12] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-10-17 12:07:53,934] [pool-1-thread-8] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-10-17 12:08:11,246] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-10-17 12:08:32,963] [pool-1-thread-4] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-10-17 12:08:42,173] [pool-1-thread-11] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-10-17 12:08:56,638] [pool-1-thread-3] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-10-17 12:09:16,344] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-10-17 12:09:33,448] [pool-1-thread-4] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-10-17 12:09:39,230] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-10-17 12:10:06,591] [pool-1-thread-11] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-10-17 12:10:13,659] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-10-17 12:10:18,629] [pool-1-thread-3] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-10-17 12:10:43,327] [pool-1-thread-9] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-10-17 12:10:53,062] [pool-1-thread-4] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-10-17 12:10:55,519] [pool-1-thread-5] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-10-17 12:11:04,881] [pool-1-thread-11] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-10-17 12:11:30,399] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-10-17 12:11:36,005] [pool-1-thread-10] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-10-17 12:11:43,245] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-10-17 12:11:57,866] [pool-1-thread-9] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-10-17 12:12:07,142] [pool-1-thread-5] Initializing /data/olympus/XYZt.vsi: [testng] [2024-10-17 12:12:12,195] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-10-17 12:12:18,561] [pool-1-thread-4] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-10-17 12:12:32,756] [pool-1-thread-3] Initializing /data/qa-17917/f10010.oir: [testng] 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[2024-10-17 12:16:00,847] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-10-17 12:16:11,451] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-10-17 12:16:31,053] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-10-17 12:16:39,279] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-10-17 12:16:48,367] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-10-17 12:16:52,429] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-10-17 12:16:56,398] [pool-1-thread-10] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-10-17 12:17:41,464] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-10-17 12:17:44,762] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-10-17 12:17:52,679] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-10-17 12:17:58,538] [pool-1-thread-5] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-10-17 12:18:03,176] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-10-17 12:18:12,463] [pool-1-thread-3] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-10-17 12:18:48,088] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-10-17 12:18:52,414] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-10-17 12:19:00,510] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-10-17 12:19:10,133] [pool-1-thread-4] Initializing /data/qa-17335/1.oir: [testng] [2024-10-17 12:19:13,832] [pool-1-thread-8] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-10-17 12:19:17,918] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] [2024-10-17 12:19:30,273] [pool-1-thread-11] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-10-17 12:19:50,046] [pool-1-thread-5] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-10-17 12:19:53,665] [pool-1-thread-10] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] 13:10:35,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 13:10:35,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:10:35,005 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-17_13-10-35.log] [testng] 13:10:35,006 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f546bb1 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 10176, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 121 minutes 14 seconds Finished: SUCCESS