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Started by upstream project "BIOFORMATS-test-repo" build number 225 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins17915704290724770895.sh + '[' targa = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35469_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 11:53:17,440 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 11:53:17,442 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 11:53:17,442 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:53:17,442 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:53:17,443 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:53:17,443 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:53:17,443 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:53:17,443 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:53:17,444 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:53:17,444 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:53:17,445 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:53:17,445 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:53:17,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:53:17,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:53:17,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:53:17,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:53:17,625 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:53:17,625 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:53:17,626 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:53:17,626 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:53:17,626 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 11:53:17,627 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 11:53:17,627 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 183 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-17 11:53:17,635] [main] java.version = 21 [testng] 11:53:17,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:53:17,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:53:17,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-17_11-53-17.log] [testng] 11:53:17,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-17 11:53:17,680] [main] testng.directory = /data [testng] [2024-10-17 11:53:17,680] [main] testng.configDirectory = /config [testng] [2024-10-17 11:53:17,688] [main] testng.multiplier = 1.0 [testng] [2024-10-17 11:53:17,689] [main] testng.in-memory = false [testng] [2024-10-17 11:53:17,689] [main] testng.allow-missing = false [testng] [2024-10-17 11:53:17,689] [main] user.language = en [testng] [2024-10-17 11:53:17,689] [main] user.country = ${user.country} [testng] [2024-10-17 11:53:17,689] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-17 11:53:18,482] [main] ---------------------------------------- [testng] [2024-10-17 11:53:18,482] [main] Total files: 21 [testng] [2024-10-17 11:53:18,483] [main] Scan time: 0.793 s (37 ms/file) [testng] [2024-10-17 11:53:18,483] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-17 11:54:03,446] [pool-1-thread-1] Initializing /data/samples/UBW8.TGA: [testng] 11:54:03,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:54:03,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:03,447 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-17_11-54-03.log] [testng] 11:54:03,448 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e8a9da8 - End of configuration. [testng] [2024-10-17 11:54:05,690] [pool-1-thread-12] Initializing /data/samples/XING_T16.TGA: [testng] 11:54:05,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:54:05,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:05,691 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-17_11-54-05.log] [testng] 11:54:05,692 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4addbd91 - End of configuration. [testng] [2024-10-17 11:54:08,078] [pool-1-thread-11] Initializing /data/samples/FLAG_T32.TGA: [testng] 11:54:08,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:54:08,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:08,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-17_11-54-08.log] [testng] 11:54:08,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e3a70f1 - End of configuration. [testng] [2024-10-17 11:54:10,277] [pool-1-thread-10] Initializing /data/samples/CBW8.TGA: [testng] 11:54:10,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:54:10,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:10,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-17_11-54-10.log] [testng] 11:54:10,279 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50ad8a6e - End of configuration. [testng] [2024-10-17 11:54:12,467] [pool-1-thread-9] Initializing /data/samples/FLAG_T16.TGA: [testng] 11:54:12,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:54:12,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:12,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-17_11-54-12.log] [testng] 11:54:12,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76c9c908 - End of configuration. [testng] [2024-10-17 11:54:14,077] [pool-1-thread-8] Initializing /data/samples/FLAG_B32.TGA: [testng] 11:54:14,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:54:14,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:14,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-17_11-54-14.log] [testng] 11:54:14,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@668bb69b - End of configuration. [testng] [2024-10-17 11:54:16,407] [pool-1-thread-7] Initializing /data/samples/XING_B24.TGA: [testng] 11:54:16,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:54:16,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:16,409 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-17_11-54-16.log] [testng] 11:54:16,409 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a645f2b - End of configuration. [testng] [2024-10-17 11:54:18,865] [pool-1-thread-6] Initializing /data/samples/FLAG_B24.TGA: [testng] 11:54:18,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:54:18,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:18,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-17_11-54-18.log] [testng] 11:54:18,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d1a6369 - End of configuration. [testng] [2024-10-17 11:54:21,037] [pool-1-thread-5] Initializing /data/samples/CTC24.TGA: [testng] 11:54:21,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:54:21,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:21,039 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-17_11-54-21.log] [testng] 11:54:21,039 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5668119c - End of configuration. [testng] [2024-10-17 11:54:22,755] [pool-1-thread-4] Initializing /data/samples/XING_B16.TGA: [testng] 11:54:22,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:54:22,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:22,756 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-17_11-54-22.log] [testng] 11:54:22,756 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ee01919 - End of configuration. [testng] [2024-10-17 11:54:25,157] [pool-1-thread-3] Initializing /data/samples/UTC32.TGA: [testng] 11:54:25,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:54:25,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:25,159 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-17_11-54-25.log] [testng] 11:54:25,159 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b5f9514 - End of configuration. [testng] [2024-10-17 11:54:26,750] [pool-1-thread-2] Initializing /data/samples/XING_T32.TGA: [testng] 11:54:26,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:54:26,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:26,751 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-17_11-54-26.log] [testng] 11:54:26,752 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ec08d04 - End of configuration. [testng] [2024-10-17 11:54:43,977] [pool-1-thread-10] Initializing /data/samples/UTC16.TGA: [testng] [2024-10-17 11:54:46,505] [pool-1-thread-9] Initializing /data/samples/CTC16.TGA: [testng] [2024-10-17 11:54:49,161] [pool-1-thread-5] Initializing /data/samples/UTC24.TGA: [testng] [2024-10-17 11:54:50,121] [pool-1-thread-6] Initializing /data/samples/CCM8.TGA: [testng] [2024-10-17 11:54:52,021] [pool-1-thread-1] Initializing /data/samples/MARBLES.TGA: [testng] [2024-10-17 11:54:53,154] [pool-1-thread-11] Initializing /data/samples/XING_B32.TGA: [testng] [2024-10-17 11:54:54,521] [pool-1-thread-3] Initializing /data/samples/FLAG_B16.TGA: [testng] [2024-10-17 11:54:56,653] [pool-1-thread-8] Initializing /data/samples/UCM8.TGA: [testng] [2024-10-17 11:54:58,918] [pool-1-thread-7] Initializing /data/samples/XING_T24.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 4 seconds Finished: SUCCESS