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Started by upstream project "BIOFORMATS-test-repo" build number 225 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins10918977866545076666.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35473_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 12:13:25,017 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 12:13:25,018 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 12:13:25,018 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:13:25,019 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:13:25,019 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 12:13:25,019 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 12:13:25,020 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 12:13:25,020 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:13:25,020 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:13:25,021 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 12:13:25,021 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 12:13:25,021 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 12:13:25,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 12:13:25,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 12:13:25,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 12:13:25,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 12:13:25,204 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 12:13:25,204 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 12:13:25,204 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 12:13:25,205 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 12:13:25,205 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 12:13:25,206 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 12:13:25,206 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-17 12:13:25,217] [main] java.version = 21 [testng] 12:13:25,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 12:13:25,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:13:25,261 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-17_12-13-25.log] [testng] 12:13:25,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-17 12:13:25,264] [main] testng.directory = /data [testng] [2024-10-17 12:13:25,264] [main] testng.configDirectory = /config [testng] [2024-10-17 12:13:25,273] [main] testng.multiplier = 1.0 [testng] [2024-10-17 12:13:25,274] [main] testng.in-memory = false [testng] [2024-10-17 12:13:25,274] [main] testng.allow-missing = false [testng] [2024-10-17 12:13:25,274] [main] user.language = en [testng] [2024-10-17 12:13:25,274] [main] user.country = ${user.country} [testng] [2024-10-17 12:13:25,274] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-17 12:18:02,456] [main] ---------------------------------------- [testng] [2024-10-17 12:18:02,456] [main] Total files: 259 [testng] [2024-10-17 12:18:02,456] [main] Scan time: 277.182 s (1070 ms/file) [testng] [2024-10-17 12:18:02,457] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-17 12:59:23,937] [pool-1-thread-1] Initializing /data/molly/11OCT2.OIF: [testng] 12:59:23,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 12:59:23,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:59:23,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-17_12-59-23.log] [testng] 12:59:23,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dd70c1c - End of configuration. [testng] [2024-10-17 13:00:58,956] [pool-1-thread-12] Initializing /data/kay/IM2pg.oib: [testng] 13:00:58,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 13:00:58,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:00:58,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-17_13-00-58.log] [testng] 13:00:58,958 |-INFO in ch.qos.logback.core.sift.SiftProcessor@183b1266 - End of configuration. [testng] [2024-10-17 13:01:00,068] [pool-1-thread-11] Initializing /data/johannes/step2.bmp: [testng] 13:01:00,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 13:01:00,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:01:00,069 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-17_13-01-00.log] [testng] 13:01:00,069 |-INFO in ch.qos.logback.core.sift.SiftProcessor@755552df - End of configuration. [testng] [2024-10-17 13:01:00,387] [pool-1-thread-10] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] 13:01:00,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 13:01:00,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:01:00,388 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-17_13-01-00.log] [testng] 13:01:00,388 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4464df19 - End of configuration. [testng] [2024-10-17 13:01:01,845] [pool-1-thread-9] Initializing /data/chris/missegragation-15.oib: [testng] 13:01:01,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 13:01:01,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:01:01,846 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-17_13-01-01.log] [testng] 13:01:01,846 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72f6511e - End of configuration. [testng] [2024-10-17 13:01:03,886] [pool-1-thread-8] Initializing /data/aryeh/1h_after_pdt.oib: [testng] 13:01:03,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 13:01:03,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:01:03,887 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-17_13-01-03.log] [testng] 13:01:03,887 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36624c87 - End of configuration. [testng] [2024-10-17 13:01:07,916] [pool-1-thread-7] Initializing /data/allan/new_30min3_1z2.oib: [testng] 13:01:07,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 13:01:07,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:01:07,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-17_13-01-07.log] [testng] 13:01:07,918 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c1a9a74 - End of configuration. [testng] [2024-10-17 13:01:09,302] [pool-1-thread-6] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] 13:01:09,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 13:01:09,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:01:09,303 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-17_13-01-09.log] [testng] 13:01:09,303 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43767748 - End of configuration. [testng] [2024-10-17 13:01:10,595] [pool-1-thread-5] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] 13:01:10,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 13:01:10,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:01:10,596 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-17_13-01-10.log] [testng] 13:01:10,596 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77ff1712 - End of configuration. [testng] [2024-10-17 13:01:15,496] [pool-1-thread-4] Initializing /data/stefan/cytosol_01a.oif: [testng] 13:01:15,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 13:01:15,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:01:15,497 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-17_13-01-15.log] [testng] 13:01:15,498 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69a8198a - End of configuration. [testng] [2024-10-17 13:06:57,137] [pool-1-thread-3] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] 13:06:57,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 13:06:57,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:06:57,138 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-17_13-06-57.log] [testng] 13:06:57,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@266cf7d0 - End of configuration. [testng] [2024-10-17 13:07:01,759] [pool-1-thread-2] Initializing /data/glen/LUT issue/60x11.oif: [testng] 13:07:01,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 13:07:01,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:07:01,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-17_13-07-01.log] [testng] 13:07:01,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f60ef6e - End of configuration. [testng] [2024-10-17 13:07:30,421] [pool-1-thread-11] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-10-17 13:07:47,355] [pool-1-thread-9] Initializing /data/aryeh/1h.oib: [testng] [2024-10-17 13:07:51,697] [pool-1-thread-7] Initializing /data/david/Image0016.oib: [testng] [2024-10-17 13:07:55,672] [pool-1-thread-6] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-10-17 13:07:59,443] [pool-1-thread-10] Initializing /data/johannes/step4b.bmp: [testng] [2024-10-17 13:08:00,561] [pool-1-thread-12] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-10-17 13:08:14,378] [pool-1-thread-8] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-10-17 13:08:18,568] [pool-1-thread-10] Initializing /data/tom/RGB-1.avi: [testng] [2024-10-17 13:08:27,393] [pool-1-thread-9] Initializing /data/aryeh/control_test.oib: [testng] [2024-10-17 13:08:32,715] [pool-1-thread-11] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-10-17 13:08:37,143] [pool-1-thread-12] Initializing /data/johannes/step4.bmp: [testng] [2024-10-17 13:08:37,997] [pool-1-thread-7] Initializing /data/johannes/step3.bmp: [testng] [2024-10-17 13:08:38,893] [pool-1-thread-6] Initializing /data/glen/singlesimul.oif: [testng] [2024-10-17 13:08:50,724] [pool-1-thread-10] Initializing /data/glen/Image0002.oif: [testng] [2024-10-17 13:09:13,786] [pool-1-thread-8] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-10-17 13:09:18,400] [pool-1-thread-12] Initializing /data/glen/seqlinestack.oib: [testng] [2024-10-17 13:09:21,534] [pool-1-thread-7] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-10-17 13:09:32,201] [pool-1-thread-11] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-10-17 13:09:40,303] [pool-1-thread-9] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-10-17 13:09:52,608] [pool-1-thread-8] Initializing /data/johannes/step1.bmp: [testng] [2024-10-17 13:09:58,035] [pool-1-thread-12] Initializing /data/glen/singleseqframe.oib: [testng] [2024-10-17 13:10:04,957] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-10-17 13:10:13,081] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-10-17 13:10:19,126] [pool-1-thread-9] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-10-17 13:10:37,424] [pool-1-thread-12] Initializing /data/glen/singleseqline.oib: [testng] [2024-10-17 13:10:41,859] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-10-17 13:10:51,110] [pool-1-thread-8] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-10-17 13:10:59,396] [pool-1-thread-9] Initializing /data/yoshihito/XY.oib: [testng] [2024-10-17 13:11:17,022] [pool-1-thread-12] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-10-17 13:11:25,289] [pool-1-thread-3] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-10-17 13:11:28,924] [pool-1-thread-11] Initializing /data/michael/CELL3.oib: [testng] [2024-10-17 13:11:32,806] [pool-1-thread-8] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-10-17 13:11:39,659] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-10-17 13:11:57,611] [pool-1-thread-11] Initializing /data/simon/never_worked.oib: [testng] [2024-10-17 13:12:01,683] [pool-1-thread-3] Initializing /data/johannes/step5b.bmp: [testng] [2024-10-17 13:12:03,882] [pool-1-thread-8] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-10-17 13:12:10,407] [pool-1-thread-9] Initializing /data/glen/singleseqframe.oif: [testng] [2024-10-17 13:12:16,622] [pool-1-thread-5] Initializing /data/molly/11OCT5.OIF: [testng] [2024-10-17 13:13:48,026] [pool-1-thread-3] Initializing /data/brian/lambda02nm.oib: [testng] [2024-10-17 13:14:00,034] [pool-1-thread-11] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-10-17 13:14:10,483] [pool-1-thread-8] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-10-17 13:14:21,903] [pool-1-thread-6] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-10-17 13:14:26,358] [pool-1-thread-3] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-10-17 13:14:37,126] [pool-1-thread-11] Initializing /data/marc/V0606L.oib: [testng] [2024-10-17 13:14:47,400] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-10-17 13:14:57,443] [pool-1-thread-6] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-10-17 13:15:04,158] [pool-1-thread-3] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-10-17 13:15:21,528] [pool-1-thread-8] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-10-17 13:15:25,751] [pool-1-thread-11] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-10-17 13:15:31,611] [pool-1-thread-6] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-10-17 13:15:41,531] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-10-17 13:15:47,622] [pool-1-thread-3] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-10-17 13:16:50,750] [pool-1-thread-11] Initializing /data/molly/11OCT6.OIF: [testng] [2024-10-17 13:18:32,027] [pool-1-thread-6] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-10-17 13:18:38,523] [pool-1-thread-8] Initializing /data/david/Image0016.oif: [testng] [2024-10-17 13:19:06,743] [pool-1-thread-6] Initializing /data/glen/notsaturated.oif: [testng] [2024-10-17 13:19:31,670] [pool-1-thread-12] Initializing /data/marc/V0606J.oib: [testng] [2024-10-17 13:20:08,260] [pool-1-thread-12] Initializing /data/molly/11OCT7.OIF: [testng] [2024-10-17 13:22:13,534] [pool-1-thread-9] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-10-17 13:22:37,531] [pool-1-thread-9] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-10-17 13:28:53,113] [pool-1-thread-7] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-10-17 13:29:25,494] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-10-17 13:29:46,444] [pool-1-thread-7] Initializing /data/sten/01.oib: [testng] [2024-10-17 13:30:08,091] [pool-1-thread-7] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-10-17 13:30:28,410] [pool-1-thread-7] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-10-17 13:30:43,565] [pool-1-thread-8] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-10-17 13:31:11,198] [pool-1-thread-7] Initializing /data/brian/Kaede15.oib: [testng] [2024-10-17 13:31:30,783] [pool-1-thread-7] Initializing /data/molly/11OCT8.OIF: [testng] [2024-10-17 13:58:21,008] [pool-1-thread-6] Initializing /data/jae/Image0001.oib: [testng] [2024-10-17 13:58:41,071] [pool-1-thread-6] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-10-17 13:59:03,878] [pool-1-thread-6] Initializing /data/glen/4205basal106072.oif: [testng] [2024-10-17 14:25:51,734] [pool-1-thread-2] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-10-17 14:26:14,699] [pool-1-thread-2] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-10-17 14:26:42,830] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-10-17 14:27:11,868] [pool-1-thread-2] Initializing /data/simon/used_to_work.oib: [testng] [2024-10-17 14:27:46,903] [pool-1-thread-2] Initializing /data/glen/Null file/test change.oif: [testng] [2024-10-17 14:29:37,638] [pool-1-thread-8] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-10-17 14:30:09,470] [pool-1-thread-8] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-10-17 14:30:47,041] [pool-1-thread-8] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-10-17 14:31:16,941] [pool-1-thread-8] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-10-17 14:31:46,145] [pool-1-thread-8] Initializing /data/christian/20min.oif: [testng] [2024-10-17 14:32:03,609] [pool-1-thread-2] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-10-17 14:32:35,113] [pool-1-thread-2] Initializing /data/glen/111407.oif: [testng] [2024-10-17 14:34:44,041] [pool-1-thread-8] Initializing /data/glen/simulstack.oif: [testng] 14:45:33,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 14:45:33,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:45:33,873 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-17_14-45-33.log] [testng] 14:45:33,874 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cb354e - End of configuration. [testng] [2024-10-17 14:46:10,652] [pool-1-thread-10] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-10-17 14:46:39,923] [pool-1-thread-10] Initializing /data/yasunori/series_1.oib: [testng] [2024-10-17 14:47:07,708] [pool-1-thread-10] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] 14:56:40,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 14:56:40,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:56:40,840 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-17_14-56-40.log] [testng] 14:56:40,840 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4626905f - End of configuration. [testng] 14:58:51,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 14:58:51,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:58:51,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-17_14-58-51.log] [testng] 14:58:51,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@238b27c - End of configuration. [testng] [2024-10-17 15:03:05,052] [pool-1-thread-10] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-10-17 15:07:47,793] [pool-1-thread-5] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-10-17 15:09:13,173] [pool-1-thread-12] Initializing /data/glen/singleseqline.oif: [testng] [2024-10-17 15:11:39,154] [pool-1-thread-5] Initializing /data/glen/simulstack.oib: [testng] [2024-10-17 15:12:01,193] [pool-1-thread-5] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-10-17 15:12:26,224] [pool-1-thread-5] Initializing /data/pedro/plv-test.oib: [testng] [2024-10-17 15:12:54,308] [pool-1-thread-5] Initializing /data/tom/zseries-test.oib: [testng] [2024-10-17 15:13:23,201] [pool-1-thread-5] Initializing /data/allan/62909#1.oib: [testng] [2024-10-17 15:13:50,100] [pool-1-thread-5] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] 15:14:13,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 15:14:13,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:14:13,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-17_15-14-13.log] [testng] 15:14:13,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fe7943b - End of configuration. [testng] [2024-10-17 15:14:38,275] [pool-1-thread-12] Initializing /data/molly/11OCT10.OIF: [testng] [2024-10-17 15:24:24,681] [pool-1-thread-10] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-10-17 15:27:43,483] [pool-1-thread-11] Initializing /data/brian/FLIP.oib: [testng] [2024-10-17 15:28:11,577] [pool-1-thread-11] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-10-17 15:32:44,725] [pool-1-thread-7] Initializing /data/molly/11OCT11.OIF: [testng] [2024-10-17 15:56:57,730] [pool-1-thread-2] Initializing /data/yoshihito/XY.oif: [testng] [2024-10-17 15:57:30,826] [pool-1-thread-3] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-10-17 15:57:59,492] [pool-1-thread-3] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-10-17 15:58:34,056] [pool-1-thread-3] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-10-17 15:58:56,111] [pool-1-thread-3] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-10-17 15:59:04,993] [pool-1-thread-8] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-10-17 15:59:27,488] [pool-1-thread-2] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-10-17 15:59:52,401] [pool-1-thread-2] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-10-17 16:00:16,375] [pool-1-thread-2] Initializing /data/karl/Image0009.oib: [testng] [2024-10-17 16:00:39,499] [pool-1-thread-2] Initializing /data/molly/11OCT4.OIF: [testng] [2024-10-17 16:03:33,444] [pool-1-thread-3] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-10-17 16:03:58,257] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-10-17 16:04:22,065] [pool-1-thread-3] Initializing /data/molly/11OCT9.OIF: [testng] 16:15:41,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 16:15:41,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:15:41,966 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-17_16-15-41.log] [testng] 16:15:41,966 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2990d717 - End of configuration. [testng] [2024-10-17 16:16:15,869] [pool-1-thread-8] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-10-17 16:16:20,870] [pool-1-thread-11] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-10-17 16:16:41,170] [pool-1-thread-11] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-10-17 16:16:46,855] [pool-1-thread-8] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-10-17 16:17:22,393] [pool-1-thread-11] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-10-17 16:17:47,840] [pool-1-thread-11] Initializing /data/molly/11OCT3.OIF: [testng] [2024-10-17 16:26:01,601] [pool-1-thread-6] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-10-17 16:26:10,727] [pool-1-thread-6] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-10-17 16:40:54,465] [pool-1-thread-1] Initializing /data/monica/Image0056.oif: [testng] [2024-10-17 16:45:23,458] [pool-1-thread-1] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-10-17 16:45:52,201] [pool-1-thread-1] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-10-17 16:46:23,369] [pool-1-thread-1] Initializing /data/glen/seqlinestack.oif: [testng] [2024-10-17 16:47:53,764] [pool-1-thread-6] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-10-17 16:48:21,439] [pool-1-thread-6] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-10-17 16:48:42,482] [pool-1-thread-6] Initializing /data/glen/notsaturated.oib: [testng] [2024-10-17 16:49:05,281] [pool-1-thread-6] Initializing /data/glen/singlesimul.oib: [testng] [2024-10-17 16:49:27,277] [pool-1-thread-6] Initializing /data/glen/Null file/test no change.oif: [testng] [2024-10-17 16:52:40,747] [pool-1-thread-6] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: Build was aborted Calling Pipeline was cancelled Finished: ABORTED