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Started by upstream project "BIOFORMATS-test-repo" build number 226 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins8528506488000316850.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35523_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 18:39:10,634 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 18:39:10,635 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 18:39:10,635 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 18:39:10,637 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 18:39:10,637 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 18:39:10,637 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 18:39:10,638 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 18:39:10,638 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 18:39:10,638 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 18:39:10,639 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 18:39:10,639 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 18:39:10,639 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 18:39:10,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 18:39:10,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 18:39:10,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 18:39:10,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 18:39:10,813 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 18:39:10,813 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 18:39:10,813 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 18:39:10,814 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 18:39:10,814 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 18:39:10,815 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 18:39:10,815 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 177 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-17 18:39:10,823] [main] java.version = 21 [testng] 18:39:10,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 18:39:10,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:39:10,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-17_18-39-10.log] [testng] 18:39:10,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-17 18:39:10,867] [main] testng.directory = /data [testng] [2024-10-17 18:39:10,867] [main] testng.configDirectory = /config [testng] [2024-10-17 18:39:10,875] [main] testng.multiplier = 1.0 [testng] [2024-10-17 18:39:10,876] [main] testng.in-memory = false [testng] [2024-10-17 18:39:10,876] [main] testng.allow-missing = false [testng] [2024-10-17 18:39:10,876] [main] user.language = en [testng] [2024-10-17 18:39:10,876] [main] user.country = ${user.country} [testng] [2024-10-17 18:39:10,876] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-17 18:39:11,997] [main] ---------------------------------------- [testng] [2024-10-17 18:39:11,997] [main] Total files: 36 [testng] [2024-10-17 18:39:11,997] [main] Scan time: 1.121 s (31 ms/file) [testng] [2024-10-17 18:39:11,998] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-17 18:39:14,973] [pool-1-thread-1] Initializing /data/generated/mri-stack24.pcx: [testng] 18:39:14,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 18:39:14,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:39:14,975 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-17_18-39-14.log] [testng] 18:39:14,975 |-INFO in ch.qos.logback.core.sift.SiftProcessor@585860a2 - End of configuration. [testng] [2024-10-17 18:39:15,006] [pool-1-thread-12] Initializing /data/generated/mri-stack6.pcx: [testng] 18:39:15,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 18:39:15,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:39:15,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-17_18-39-15.log] [testng] 18:39:15,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cbe01c8 - End of configuration. [testng] [2024-10-17 18:39:15,054] [pool-1-thread-11] Initializing /data/generated/mri-stack22.pcx: [testng] 18:39:15,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 18:39:15,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:39:15,056 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-17_18-39-15.log] [testng] 18:39:15,056 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3df9a0a6 - End of configuration. [testng] [2024-10-17 18:39:15,094] [pool-1-thread-10] Initializing /data/generated/mri-stack25.pcx: [testng] 18:39:15,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 18:39:15,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:39:15,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-17_18-39-15.log] [testng] 18:39:15,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3254f22f - End of configuration. [testng] [2024-10-17 18:39:15,123] [pool-1-thread-9] Initializing /data/generated/mri-stack12.pcx: [testng] 18:39:15,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 18:39:15,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:39:15,124 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-17_18-39-15.log] [testng] 18:39:15,124 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b37b149 - End of configuration. [testng] [2024-10-17 18:39:15,162] [pool-1-thread-8] Initializing /data/generated/mri-stack4.pcx: [testng] 18:39:15,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 18:39:15,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:39:15,163 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-17_18-39-15.log] [testng] 18:39:15,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@233bbffd - End of configuration. [testng] [2024-10-17 18:39:15,200] [pool-1-thread-7] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] 18:39:15,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 18:39:15,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:39:15,201 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-17_18-39-15.log] [testng] 18:39:15,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b4eea6f - End of configuration. [testng] [2024-10-17 18:39:15,246] [pool-1-thread-6] Initializing /data/generated/mri-stack20.pcx: [testng] 18:39:15,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 18:39:15,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:39:15,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-17_18-39-15.log] [testng] 18:39:15,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b859d5b - End of configuration. [testng] [2024-10-17 18:39:15,288] [pool-1-thread-5] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] 18:39:15,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 18:39:15,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:39:15,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-17_18-39-15.log] [testng] 18:39:15,289 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c6ce2c6 - End of configuration. [testng] [2024-10-17 18:39:15,328] [pool-1-thread-4] Initializing /data/generated/mri-stack5.pcx: [testng] 18:39:15,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 18:39:15,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:39:15,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-17_18-39-15.log] [testng] 18:39:15,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2adf31de - End of configuration. [testng] [2024-10-17 18:39:15,366] [pool-1-thread-3] Initializing /data/generated/mri-stack2.pcx: [testng] 18:39:15,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 18:39:15,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:39:15,367 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-17_18-39-15.log] [testng] 18:39:15,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c016ea - End of configuration. [testng] [2024-10-17 18:39:15,402] [pool-1-thread-2] Initializing /data/generated/mri-stack19.pcx: [testng] 18:39:15,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 18:39:15,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:39:15,403 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-17_18-39-15.log] [testng] 18:39:15,403 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ad4fb32 - End of configuration. [testng] [2024-10-17 18:39:20,104] [pool-1-thread-6] Initializing /data/generated/mri-stack1.pcx: [testng] [2024-10-17 18:39:20,136] [pool-1-thread-1] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-10-17 18:39:20,173] [pool-1-thread-3] Initializing /data/generated/mri-stack11.pcx: [testng] [2024-10-17 18:39:20,207] [pool-1-thread-11] Initializing /data/generated/mri-stack26.pcx: [testng] [2024-10-17 18:39:20,249] [pool-1-thread-12] Initializing /data/generated/mri-stack10.pcx: [testng] [2024-10-17 18:39:20,280] [pool-1-thread-8] Initializing /data/generated/mri-stack0.pcx: [testng] [2024-10-17 18:39:20,311] [pool-1-thread-4] Initializing /data/generated/mri-stack15.pcx: [testng] [2024-10-17 18:39:20,349] [pool-1-thread-10] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2024-10-17 18:39:20,387] [pool-1-thread-2] Initializing /data/generated/mri-stack9.pcx: [testng] [2024-10-17 18:39:20,425] [pool-1-thread-9] Initializing /data/generated/mri-stack18.pcx: [testng] [2024-10-17 18:39:20,464] [pool-1-thread-7] Initializing /data/generated/mri-stack7.pcx: [testng] [2024-10-17 18:39:20,492] [pool-1-thread-5] Initializing /data/generated/mri-stack21.pcx: [testng] [2024-10-17 18:39:23,919] [pool-1-thread-2] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-10-17 18:39:24,093] [pool-1-thread-5] Initializing /data/generated/mri-stack13.pcx: [testng] [2024-10-17 18:39:24,127] [pool-1-thread-7] Initializing /data/generated/mri-stack8.pcx: [testng] [2024-10-17 18:39:24,161] [pool-1-thread-9] Initializing /data/generated/mri-stack23.pcx: [testng] [2024-10-17 18:39:24,187] [pool-1-thread-12] Initializing /data/generated/mri-stack14.pcx: [testng] [2024-10-17 18:39:24,222] [pool-1-thread-3] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2024-10-17 18:39:24,258] [pool-1-thread-4] Initializing /data/generated/mri-stack16.pcx: [testng] [2024-10-17 18:39:24,314] [pool-1-thread-11] Initializing /data/generated/mri-stack17.pcx: [testng] [2024-10-17 18:39:24,344] [pool-1-thread-8] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2024-10-17 18:39:24,381] [pool-1-thread-6] Initializing /data/generated/mri-stack3.pcx: [testng] [2024-10-17 18:39:24,440] [pool-1-thread-1] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 19 seconds Finished: SUCCESS