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Started by upstream project "BIOFORMATS-test-repo" build number 226 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins7558366239049145287.sh + '[' lim = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35537_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 20:52:37,080 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 20:52:37,081 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 20:52:37,081 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 20:52:37,082 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 20:52:37,082 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 20:52:37,083 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 20:52:37,083 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 20:52:37,083 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 20:52:37,083 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 20:52:37,084 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 20:52:37,084 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 20:52:37,084 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 20:52:37,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 20:52:37,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 20:52:37,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 20:52:37,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 20:52:37,261 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 20:52:37,261 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 20:52:37,261 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 20:52:37,261 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 20:52:37,261 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 20:52:37,262 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 20:52:37,262 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 179 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-17 20:52:37,270] [main] java.version = 21 [testng] 20:52:37,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 20:52:37,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:52:37,312 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-17_20-52-37.log] [testng] 20:52:37,313 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-17 20:52:37,314] [main] testng.directory = /data [testng] [2024-10-17 20:52:37,314] [main] testng.configDirectory = /config [testng] [2024-10-17 20:52:37,322] [main] testng.multiplier = 1.0 [testng] [2024-10-17 20:52:37,323] [main] testng.in-memory = false [testng] [2024-10-17 20:52:37,323] [main] testng.allow-missing = false [testng] [2024-10-17 20:52:37,323] [main] user.language = en [testng] [2024-10-17 20:52:37,323] [main] user.country = ${user.country} [testng] [2024-10-17 20:52:37,323] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-17 20:52:37,831] [main] ---------------------------------------- [testng] [2024-10-17 20:52:37,831] [main] Total files: 21 [testng] [2024-10-17 20:52:37,832] [main] Scan time: 0.508 s (24 ms/file) [testng] [2024-10-17 20:52:37,832] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-17 20:52:41,056] [pool-1-thread-1] Initializing /data/venu/Kontrolle0009.lim: [testng] 20:52:41,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 20:52:41,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:52:41,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-17_20-52-41.log] [testng] 20:52:41,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f74a855 - End of configuration. [testng] [2024-10-17 20:52:41,173] [pool-1-thread-12] Initializing /data/venu/Kontrolle0020.lim: [testng] 20:52:41,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 20:52:41,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:52:41,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-17_20-52-41.log] [testng] 20:52:41,174 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fcef0b1 - End of configuration. [testng] [2024-10-17 20:52:41,285] [pool-1-thread-11] Initializing /data/venu/Kontrolle0017.lim: [testng] 20:52:41,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 20:52:41,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:52:41,286 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-17_20-52-41.log] [testng] 20:52:41,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13929620 - End of configuration. [testng] [2024-10-17 20:52:41,398] [pool-1-thread-10] Initializing /data/venu/Kontrolle0007.lim: [testng] 20:52:41,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 20:52:41,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:52:41,400 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-17_20-52-41.log] [testng] 20:52:41,400 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56ebccfb - End of configuration. [testng] [2024-10-17 20:52:41,509] [pool-1-thread-9] Initializing /data/venu/Kontrolle0013.lim: [testng] 20:52:41,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 20:52:41,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:52:41,510 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-17_20-52-41.log] [testng] 20:52:41,510 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f00b6cd - End of configuration. [testng] [2024-10-17 20:52:41,616] [pool-1-thread-8] Initializing /data/venu/Kontrolle0012.lim: [testng] 20:52:41,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 20:52:41,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:52:41,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-17_20-52-41.log] [testng] 20:52:41,617 |-INFO in ch.qos.logback.core.sift.SiftProcessor@323935ce - End of configuration. [testng] [2024-10-17 20:52:41,728] [pool-1-thread-7] Initializing /data/venu/Kontrolle0018.lim: [testng] 20:52:41,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 20:52:41,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:52:41,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-17_20-52-41.log] [testng] 20:52:41,729 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67824092 - End of configuration. [testng] [2024-10-17 20:52:41,838] [pool-1-thread-6] Initializing /data/venu/Kontrolle0002.lim: [testng] 20:52:41,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 20:52:41,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:52:41,839 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-17_20-52-41.log] [testng] 20:52:41,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ea901f - End of configuration. [testng] [2024-10-17 20:52:41,950] [pool-1-thread-5] Initializing /data/venu/Kontrolle0021.lim: [testng] 20:52:41,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 20:52:41,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:52:41,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-17_20-52-41.log] [testng] 20:52:41,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19b5ff60 - End of configuration. [testng] [2024-10-17 20:52:42,048] [pool-1-thread-4] Initializing /data/venu/Kontrolle0019.lim: [testng] 20:52:42,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 20:52:42,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:52:42,049 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-17_20-52-42.log] [testng] 20:52:42,049 |-INFO in ch.qos.logback.core.sift.SiftProcessor@420a4eee - End of configuration. [testng] [2024-10-17 20:52:42,364] [pool-1-thread-3] Initializing /data/venu/Kontrolle0003.lim: [testng] 20:52:42,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 20:52:42,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:52:42,365 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-17_20-52-42.log] [testng] 20:52:42,365 |-INFO in ch.qos.logback.core.sift.SiftProcessor@281dd3e8 - End of configuration. [testng] [2024-10-17 20:52:42,463] [pool-1-thread-2] Initializing /data/venu/Kontrolle0014.lim: [testng] 20:52:42,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 20:52:42,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:52:42,464 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-17_20-52-42.log] [testng] 20:52:42,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50413c65 - End of configuration. [testng] [2024-10-17 20:52:50,411] [pool-1-thread-12] Initializing /data/venu/Kontrolle0010.lim: [testng] [2024-10-17 20:52:50,505] [pool-1-thread-6] Initializing /data/venu/Kontrolle0008.lim: [testng] [2024-10-17 20:52:50,603] [pool-1-thread-9] Initializing /data/venu/Kontrolle0005.lim: [testng] [2024-10-17 20:52:50,697] [pool-1-thread-10] Initializing /data/venu/Kontrolle0004.lim: [testng] [2024-10-17 20:52:50,777] [pool-1-thread-1] Initializing /data/venu/Kontrolle0016.lim: [testng] [2024-10-17 20:52:50,865] [pool-1-thread-5] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-10-17 20:52:50,945] [pool-1-thread-4] Initializing /data/venu/Kontrolle0001.lim: [testng] [2024-10-17 20:52:51,037] [pool-1-thread-8] Initializing /data/venu/Kontrolle0015.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 seconds Finished: SUCCESS