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Started by upstream project "BIOFORMATS-test-repo" build number 227 originally caused by: Started by upstream project "Trigger" build number 252 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins6725142595051358420.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35544_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 07:38:27,139 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 07:38:27,141 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 07:38:27,141 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:38:27,142 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:38:27,142 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:38:27,142 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:38:27,143 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:38:27,143 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:38:27,143 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:38:27,143 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:38:27,144 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:38:27,144 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:38:27,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:38:27,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:38:27,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:38:27,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:38:27,406 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:38:27,406 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:38:27,406 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:38:27,407 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:38:27,407 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 07:38:27,408 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 07:38:27,408 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 265 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-18 07:38:27,418] [main] java.version = 1.8.0_342 [testng] 07:38:27,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:38:27,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:38:27,466 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-18_07-38-27.log] [testng] 07:38:27,467 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-18 07:38:27,469] [main] testng.directory = /data [testng] [2024-10-18 07:38:27,469] [main] testng.configDirectory = /config [testng] [2024-10-18 07:38:27,481] [main] testng.multiplier = 1.0 [testng] [2024-10-18 07:38:27,482] [main] testng.in-memory = false [testng] [2024-10-18 07:38:27,482] [main] testng.allow-missing = false [testng] [2024-10-18 07:38:27,482] [main] user.language = en [testng] [2024-10-18 07:38:27,482] [main] user.country = ${user.country} [testng] [2024-10-18 07:38:27,482] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-18 07:38:28,926] [main] ---------------------------------------- [testng] [2024-10-18 07:38:28,926] [main] Total files: 36 [testng] [2024-10-18 07:38:28,926] [main] Scan time: 1.444 s (40 ms/file) [testng] [2024-10-18 07:38:28,926] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-18 07:38:32,350] [pool-1-thread-1] Initializing /data/generated/mri-stack12.pcx: [testng] 07:38:32,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:38:32,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:38:32,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-18_07-38-32.log] [testng] 07:38:32,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d838507 - End of configuration. [testng] [2024-10-18 07:38:32,416] [pool-1-thread-12] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] 07:38:32,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:38:32,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:38:32,417 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-18_07-38-32.log] [testng] 07:38:32,417 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2aabca1e - End of configuration. [testng] [2024-10-18 07:38:32,458] [pool-1-thread-11] Initializing /data/generated/mri-stack16.pcx: [testng] 07:38:32,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:38:32,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:38:32,459 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-18_07-38-32.log] [testng] 07:38:32,459 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b170bb9 - End of configuration. [testng] [2024-10-18 07:38:32,489] [pool-1-thread-10] Initializing /data/generated/mri-stack4.pcx: [testng] 07:38:32,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:38:32,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:38:32,490 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-18_07-38-32.log] [testng] 07:38:32,490 |-INFO in ch.qos.logback.core.sift.SiftProcessor@609a802b - End of configuration. [testng] [2024-10-18 07:38:32,522] [pool-1-thread-9] Initializing /data/generated/mri-stack6.pcx: [testng] 07:38:32,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:38:32,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:38:32,523 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-18_07-38-32.log] [testng] 07:38:32,523 |-INFO in ch.qos.logback.core.sift.SiftProcessor@250dad73 - End of configuration. [testng] [2024-10-18 07:38:32,559] [pool-1-thread-8] Initializing /data/generated/mri-stack10.pcx: [testng] 07:38:32,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:38:32,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:38:32,560 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-18_07-38-32.log] [testng] 07:38:32,561 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d530de8 - End of configuration. [testng] [2024-10-18 07:38:32,600] [pool-1-thread-7] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] 07:38:32,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:38:32,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:38:32,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-18_07-38-32.log] [testng] 07:38:32,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ed28f95 - End of configuration. [testng] [2024-10-18 07:38:32,639] [pool-1-thread-6] Initializing /data/generated/mri-stack3.pcx: [testng] 07:38:32,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:38:32,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:38:32,641 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-18_07-38-32.log] [testng] 07:38:32,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38c494a9 - End of configuration. [testng] [2024-10-18 07:38:32,674] [pool-1-thread-5] Initializing /data/generated/mri-stack14.pcx: [testng] 07:38:32,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:38:32,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:38:32,675 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-18_07-38-32.log] [testng] 07:38:32,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7297c7a0 - End of configuration. [testng] [2024-10-18 07:38:32,708] [pool-1-thread-4] Initializing /data/generated/mri-stack19.pcx: [testng] 07:38:32,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:38:32,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:38:32,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-18_07-38-32.log] [testng] 07:38:32,709 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66983719 - End of configuration. [testng] [2024-10-18 07:38:32,746] [pool-1-thread-3] Initializing /data/generated/mri-stack17.pcx: [testng] 07:38:32,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:38:32,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:38:32,747 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-18_07-38-32.log] [testng] 07:38:32,747 |-INFO in ch.qos.logback.core.sift.SiftProcessor@330e82a4 - End of configuration. [testng] [2024-10-18 07:38:32,787] [pool-1-thread-2] Initializing /data/generated/mri-stack7.pcx: [testng] 07:38:32,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:38:32,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:38:32,788 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-18_07-38-32.log] [testng] 07:38:32,788 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56f78f24 - End of configuration. [testng] [2024-10-18 07:38:38,430] [pool-1-thread-4] Initializing /data/generated/mri-stack22.pcx: [testng] [2024-10-18 07:38:38,529] [pool-1-thread-11] Initializing /data/generated/mri-stack2.pcx: [testng] [2024-10-18 07:38:38,628] [pool-1-thread-5] Initializing /data/generated/mri-stack18.pcx: [testng] [2024-10-18 07:38:38,737] [pool-1-thread-2] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] [2024-10-18 07:38:38,837] [pool-1-thread-6] Initializing /data/generated/mri-stack15.pcx: [testng] [2024-10-18 07:38:38,945] [pool-1-thread-10] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2024-10-18 07:38:39,047] [pool-1-thread-8] Initializing /data/generated/mri-stack0.pcx: [testng] [2024-10-18 07:38:39,139] [pool-1-thread-3] Initializing /data/generated/mri-stack23.pcx: [testng] [2024-10-18 07:38:39,255] [pool-1-thread-1] Initializing /data/generated/mri-stack20.pcx: [testng] [2024-10-18 07:38:39,348] [pool-1-thread-9] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-10-18 07:38:39,457] [pool-1-thread-12] Initializing /data/generated/mri-stack9.pcx: [testng] [2024-10-18 07:38:39,538] [pool-1-thread-7] Initializing /data/generated/mri-stack26.pcx: [testng] [2024-10-18 07:38:43,942] [pool-1-thread-3] Initializing /data/generated/mri-stack21.pcx: [testng] [2024-10-18 07:38:44,176] [pool-1-thread-8] Initializing /data/generated/mri-stack24.pcx: [testng] [2024-10-18 07:38:44,409] [pool-1-thread-7] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2024-10-18 07:38:44,637] [pool-1-thread-5] Initializing /data/generated/mri-stack11.pcx: [testng] [2024-10-18 07:38:44,797] [pool-1-thread-12] Initializing /data/generated/mri-stack13.pcx: [testng] [2024-10-18 07:38:44,945] [pool-1-thread-11] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-10-18 07:38:45,055] [pool-1-thread-6] Initializing /data/generated/mri-stack5.pcx: [testng] [2024-10-18 07:38:45,160] [pool-1-thread-4] Initializing /data/generated/mri-stack25.pcx: [testng] [2024-10-18 07:38:45,264] [pool-1-thread-1] Initializing /data/generated/mri-stack8.pcx: [testng] [2024-10-18 07:38:45,403] [pool-1-thread-2] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2024-10-18 07:38:45,809] [pool-1-thread-9] Initializing /data/generated/mri-stack1.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 25 seconds Finished: SUCCESS