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Started by upstream project "BIOFORMATS-test-repo" build number 227 originally caused by: Started by upstream project "Trigger" build number 252 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins9551043919680639890.sh + '[' gatan = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35546_merge_ci -v /uod/idr/repos/curated/gatan:/data -v /uod/idr-scratch/merge-ci/curated/gatan:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 07:38:37,350 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 07:38:37,351 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 07:38:37,351 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:38:37,352 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:38:37,352 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:38:37,353 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:38:37,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:38:37,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:38:37,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:38:37,354 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:38:37,354 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:38:37,354 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:38:37,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:38:37,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:38:37,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:38:37,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:38:37,606 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:38:37,606 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:38:37,606 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:38:37,606 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:38:37,607 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 07:38:37,607 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 07:38:37,607 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 254 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-18 07:38:37,617] [main] java.version = 1.8.0_342 [testng] 07:38:37,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:38:37,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:38:37,664 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-18_07-38-37.log] [testng] 07:38:37,665 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-18 07:38:37,667] [main] testng.directory = /data [testng] [2024-10-18 07:38:37,667] [main] testng.configDirectory = /config [testng] [2024-10-18 07:38:37,679] [main] testng.multiplier = 1.0 [testng] [2024-10-18 07:38:37,679] [main] testng.in-memory = false [testng] [2024-10-18 07:38:37,679] [main] testng.allow-missing = false [testng] [2024-10-18 07:38:37,679] [main] user.language = en [testng] [2024-10-18 07:38:37,679] [main] user.country = ${user.country} [testng] [2024-10-18 07:38:37,679] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-18 07:38:53,539] [main] ---------------------------------------- [testng] [2024-10-18 07:38:53,539] [main] Total files: 103 [testng] [2024-10-18 07:38:53,540] [main] Scan time: 15.86 s (153 ms/file) [testng] [2024-10-18 07:38:53,540] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 98 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-18 07:40:04,144] [pool-1-thread-1] Initializing /data/public/imagesc-36590/SmallMontage0005.dm4: [testng] 07:40:04,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:40:04,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:40:04,146 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-18_07-40-04.log] [testng] 07:40:04,146 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f64aa4f - End of configuration. [testng] [2024-10-18 07:40:04,373] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0019.dm4: [testng] 07:40:04,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:40:04,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:40:04,374 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-18_07-40-04.log] [testng] 07:40:04,374 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1df5367c - End of configuration. [testng] [2024-10-18 07:40:04,555] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0003.dm4: [testng] 07:40:04,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:40:04,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:40:04,557 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-18_07-40-04.log] [testng] 07:40:04,557 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bf9e0f9 - End of configuration. [testng] [2024-10-18 07:40:04,794] [pool-1-thread-10] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-128x128.tif: [testng] 07:40:04,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:40:04,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:40:04,795 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-18_07-40-04.log] [testng] 07:40:04,795 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12d6ea29 - End of configuration. [testng] [2024-10-18 07:40:06,676] [pool-1-thread-9] Initializing /data/qa-11392/Example_Gatan_File.dm4: [testng] 07:40:06,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:40:06,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:40:06,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-18_07-40-06.log] [testng] 07:40:06,678 |-INFO in ch.qos.logback.core.sift.SiftProcessor@447a000b - End of configuration. [testng] [2024-10-18 07:40:07,005] [pool-1-thread-8] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-1020x1020.tif: [testng] 07:40:07,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:40:07,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:40:07,006 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-18_07-40-07.log] [testng] 07:40:07,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38ce2ab9 - End of configuration. [testng] [2024-10-18 07:40:09,068] [pool-1-thread-7] Initializing /data/qa-8007/Prefix_3VBSED_slice_0011.dm3: [testng] 07:40:09,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:40:09,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:40:09,069 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-18_07-40-09.log] [testng] 07:40:09,069 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f629d01 - End of configuration. [testng] [2024-10-18 07:40:09,392] [pool-1-thread-6] Initializing /data/thorsten/60kx_HAADF_03.dm3: [testng] 07:40:09,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:40:09,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:40:09,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-18_07-40-09.log] [testng] 07:40:09,393 |-INFO in ch.qos.logback.core.sift.SiftProcessor@166f735b - End of configuration. [testng] [2024-10-18 07:40:09,706] [pool-1-thread-5] Initializing /data/jay/Carbon.34.dm3: [testng] 07:40:09,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:40:09,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:40:09,707 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-18_07-40-09.log] [testng] 07:40:09,707 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a293a6 - End of configuration. [testng] [2024-10-18 07:40:10,025] [pool-1-thread-4] Initializing /data/jay/dnasample1.dm3: [testng] 07:40:10,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:40:10,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:40:10,025 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-18_07-40-10.log] [testng] 07:40:10,026 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51b82adf - End of configuration. [testng] [2024-10-18 07:40:10,332] [pool-1-thread-3] Initializing /data/jay/camtest1.dm3: [testng] 07:40:10,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:40:10,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:40:10,333 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-18_07-40-10.log] [testng] 07:40:10,333 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8e487ea - End of configuration. [testng] [2024-10-18 07:40:10,680] [pool-1-thread-2] Initializing /data/jay/ViewDMtest.dm3: [testng] 07:40:10,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:40:10,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:40:10,680 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-18_07-40-10.log] [testng] 07:40:10,681 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b046d7 - End of configuration. [testng] [2024-10-18 07:40:17,908] [pool-1-thread-1] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0052.dm4: [testng] [2024-10-18 07:40:18,474] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0018.dm4: [testng] [2024-10-18 07:40:19,066] [pool-1-thread-7] Initializing /data/jay/biosamplefullframe.dm3: [testng] [2024-10-18 07:40:19,655] [pool-1-thread-12] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.tif: [testng] [2024-10-18 07:40:22,542] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0009.dm4: [testng] [2024-10-18 07:40:23,497] [pool-1-thread-2] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.dm3: [testng] [2024-10-18 07:40:24,065] [pool-1-thread-3] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-10-18 07:40:26,749] [pool-1-thread-5] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.dm3: [testng] [2024-10-18 07:40:27,134] [pool-1-thread-4] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0053.dm4: [testng] [2024-10-18 07:40:27,863] [pool-1-thread-9] Initializing /data/melissa/annotation-test.dm3: [testng] [2024-10-18 07:40:32,037] [pool-1-thread-6] Initializing /data/ofra/Co on INT 28-12-10.11.dm3: [testng] [2024-10-18 07:40:33,094] [pool-1-thread-11] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-363.dm3: [testng] [2024-10-18 07:40:34,449] [pool-1-thread-7] Initializing /data/ofra/lowloss.dm3: [testng] [2024-10-18 07:40:35,717] [pool-1-thread-10] Initializing /data/imagesc-3719/Heart_BSE_slice_0019.dm4: [testng] [2024-10-18 07:40:36,272] [pool-1-thread-9] Initializing /data/jay/samples/APC2a-e5.dm3: [testng] [2024-10-18 07:40:37,239] [pool-1-thread-8] Initializing /data/jay/samples/APC2a-e3.dm3: [testng] [2024-10-18 07:40:39,059] [pool-1-thread-5] Initializing /data/public/imagesc-36590/SmallMontage0007.dm4: [testng] [2024-10-18 07:40:39,673] [pool-1-thread-2] Initializing /data/jay/DMtest2.dm3: [testng] [2024-10-18 07:40:40,252] [pool-1-thread-6] Initializing /data/imagesc-3719/Prefix_BSE_slice_0001.dm4: [testng] [2024-10-18 07:40:41,385] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0005.dm4: [testng] [2024-10-18 07:40:43,249] [pool-1-thread-11] Initializing /data/public/imagesc-36590/SmallMontage0003.dm4: [testng] [2024-10-18 07:40:44,630] [pool-1-thread-9] Initializing /data/qa-7642/8.dm4: [testng] [2024-10-18 07:40:45,084] [pool-1-thread-8] Initializing /data/public/EMPIAR/EMPIAR-10013/BGal_000438_frames.dm4: [testng] [2024-10-18 07:40:45,571] [pool-1-thread-5] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-96x96.tif: [testng] [2024-10-18 07:40:48,188] [pool-1-thread-12] Initializing /data/melissa/annotation-test.tif: [testng] [2024-10-18 07:40:52,041] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0001.dm4: [testng] [2024-10-18 07:40:53,952] [pool-1-thread-10] Initializing /data/qa-21761/example.dm4: [testng] [2024-10-18 07:40:54,550] [pool-1-thread-3] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0046.dm4: [testng] [2024-10-18 07:40:55,263] [pool-1-thread-4] Initializing /data/jay/recAmaghi.dm3: [testng] [2024-10-18 07:40:56,300] [pool-1-thread-7] Initializing /data/jay/samples/APC2a-e3.tif: [testng] [2024-10-18 07:40:59,209] [pool-1-thread-9] Initializing /data/jayne/AM-2/MonGb2-S8.dm3: [testng] [2024-10-18 07:40:59,948] [pool-1-thread-11] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0048.dm4: [testng] [2024-10-18 07:41:00,301] [pool-1-thread-2] Initializing /data/samples/mode-metadata/mode_format_test.dm3: [testng] [2024-10-18 07:41:02,342] [pool-1-thread-8] Initializing /data/public/imagesc-36590/SmallMontage0008.dm4: [testng] [2024-10-18 07:41:04,023] [pool-1-thread-10] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-256x256.tif: [testng] [2024-10-18 07:41:07,893] [pool-1-thread-1] Initializing /data/qa-21647/Sample2_L1-0002.dm4: [testng] [2024-10-18 07:41:08,953] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0015.dm4: [testng] [2024-10-18 07:41:10,720] [pool-1-thread-4] Initializing /data/public/imagesc-36590/SmallMontage0004.dm4: [testng] [2024-10-18 07:41:13,791] [pool-1-thread-8] Initializing /data/public/imagesc-36590/SmallMontage0006.dm4: [testng] [2024-10-18 07:41:15,603] [pool-1-thread-9] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-10-18 07:41:19,630] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0016.dm4: [testng] [2024-10-18 07:41:20,899] [pool-1-thread-2] Initializing /data/nuno/Prefix_3VBSED_stack_30_slice_0290.dm3: [testng] [2024-10-18 07:41:22,032] [pool-1-thread-1] Initializing /data/chip/Nanogold-1.dm3: [testng] [2024-10-18 07:41:22,978] [pool-1-thread-12] Initializing /data/jay/smallerfile.dm3: [testng] [2024-10-18 07:41:23,757] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0012.dm4: [testng] [2024-10-18 07:41:24,337] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0008.dm4: [testng] [2024-10-18 07:41:24,969] [pool-1-thread-3] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-10-18 07:41:28,174] [pool-1-thread-8] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0047.dm4: [testng] [2024-10-18 07:41:31,562] [pool-1-thread-7] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362-smaller.tif: [testng] [2024-10-18 07:41:34,899] [pool-1-thread-11] Initializing /data/public/imagesc-36590/SmallMontage0002.dm4: [testng] [2024-10-18 07:41:36,039] [pool-1-thread-5] Initializing /data/public/imagesc-36590/SmallMontage0001.dm4: [testng] [2024-10-18 07:41:37,575] [pool-1-thread-10] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-10-18 07:41:42,293] [pool-1-thread-12] Initializing /data/jay/samples/APC2a-e4.dm3: [testng] [2024-10-18 07:41:44,308] [pool-1-thread-4] Initializing /data/samples/test-tiles.dm3: [testng] [2024-10-18 07:41:44,959] [pool-1-thread-6] Initializing /data/jayne/AM-2/MonGb3-S3.dm3: [testng] [2024-10-18 07:41:45,586] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0011.dm4: [testng] [2024-10-18 07:41:46,078] [pool-1-thread-5] Initializing /data/jay/samples/APC2a-e5.tif: [testng] [2024-10-18 07:41:49,111] [pool-1-thread-11] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-10-18 07:41:53,791] [pool-1-thread-2] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0045.dm4: [testng] [2024-10-18 07:41:55,054] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0000.dm4: [testng] [2024-10-18 07:41:57,364] [pool-1-thread-8] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0050.dm4: [testng] [2024-10-18 07:41:58,142] [pool-1-thread-9] Initializing /data/jay/biosamplefullframetif.tif: [testng] [2024-10-18 07:42:02,859] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0013.dm4: [testng] [2024-10-18 07:42:04,280] [pool-1-thread-1] Initializing /data/nuno/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-10-18 07:42:05,866] [pool-1-thread-6] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.dm4: [testng] [2024-10-18 07:42:09,277] [pool-1-thread-12] Initializing /data/jay/recAmag6500dm.dm3: [testng] [2024-10-18 07:42:10,070] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0014.dm4: [testng] [2024-10-18 07:42:10,694] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0017.dm4: [testng] [2024-10-18 07:42:13,166] [pool-1-thread-4] Initializing /data/public/imagesc-36590/SmallMontage0000.dm4: [testng] [2024-10-18 07:42:14,944] [pool-1-thread-6] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-10-18 07:42:18,650] [pool-1-thread-1] Initializing /data/jayne/AM-2/MonGb2-S9.dm3: [testng] [2024-10-18 07:42:19,220] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0004.dm4: [testng] [2024-10-18 07:42:21,243] [pool-1-thread-5] Initializing /data/jay/DMtest.dm3: [testng] [2024-10-18 07:42:22,797] [pool-1-thread-4] Initializing /data/jayne/AM-2/MonGb2-S7.dm3: [testng] [2024-10-18 07:42:23,531] [pool-1-thread-8] Initializing /data/jayne/AM-2/MonGb3-S1.dm3: [testng] [2024-10-18 07:42:24,256] [pool-1-thread-2] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0049.dm4: [testng] [2024-10-18 07:42:24,882] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0007.dm4: [testng] [2024-10-18 07:42:25,459] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0010.dm4: [testng] [2024-10-18 07:42:25,991] [pool-1-thread-12] Initializing /data/jay/dnasample.tif: [testng] [2024-10-18 07:42:30,142] [pool-1-thread-3] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-480x480.tif: [testng] [2024-10-18 07:42:39,318] [pool-1-thread-10] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0051.dm4: [testng] [2024-10-18 07:42:40,604] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0006.dm4: [testng] [2024-10-18 07:42:42,080] [pool-1-thread-1] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-799x799.tif: [testng] [2024-10-18 07:42:49,230] [pool-1-thread-11] Initializing /data/jay/samples/APC2a-e4.tif: [testng] [2024-10-18 07:42:51,861] [pool-1-thread-8] Initializing /data/jay/graphitedm3.dm3: [testng] [2024-10-18 07:42:52,741] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0002.dm4: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 5194, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 47 seconds Finished: SUCCESS