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Started by upstream project "BIOFORMATS-test-repo" build number 227 originally caused by: Started by upstream project "Trigger" build number 252 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins15622293563096469385.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35559_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 07:43:43,346 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 07:43:43,348 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 07:43:43,348 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:43:43,349 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:43:43,349 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:43:43,349 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:43:43,349 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:43:43,349 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:43:43,350 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:43:43,350 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:43:43,350 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:43:43,350 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:43:43,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:43:43,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:43:43,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:43:43,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:43:43,596 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:43:43,596 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:43:43,596 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:43:43,597 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:43:43,597 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 07:43:43,597 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 07:43:43,598 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 248 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-18 07:43:43,607] [main] java.version = 1.8.0_342 [testng] 07:43:43,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:43:43,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:43:43,652 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-18_07-43-43.log] [testng] 07:43:43,654 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-18 07:43:43,656] [main] testng.directory = /data [testng] [2024-10-18 07:43:43,656] [main] testng.configDirectory = /config [testng] [2024-10-18 07:43:43,667] [main] testng.multiplier = 1.0 [testng] [2024-10-18 07:43:43,667] [main] testng.in-memory = false [testng] [2024-10-18 07:43:43,668] [main] testng.allow-missing = false [testng] [2024-10-18 07:43:43,668] [main] user.language = en [testng] [2024-10-18 07:43:43,668] [main] user.country = ${user.country} [testng] [2024-10-18 07:43:43,668] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-18 07:45:05,883] [main] ---------------------------------------- [testng] [2024-10-18 07:45:05,884] [main] Total files: 21 [testng] [2024-10-18 07:45:05,884] [main] Scan time: 82.215 s (3915 ms/file) [testng] [2024-10-18 07:45:05,884] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-18 07:48:17,948] [pool-1-thread-1] Initializing /data/stefan/001_q04.txt: [testng] 07:48:17,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:48:17,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:48:17,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-18_07-48-17.log] [testng] 07:48:17,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30ee652c - End of configuration. [testng] [2024-10-18 07:48:34,862] [pool-1-thread-12] Initializing /data/stefan/001_q11.txt: [testng] 07:48:34,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:48:34,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:48:34,863 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-18_07-48-34.log] [testng] 07:48:34,864 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d5176d4 - End of configuration. [testng] [2024-10-18 07:48:58,594] [pool-1-thread-11] Initializing /data/stefan/001_q03.txt: [testng] 07:48:58,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:48:58,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:48:58,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-18_07-48-58.log] [testng] 07:48:58,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4175039f - End of configuration. [testng] [2024-10-18 07:49:13,857] [pool-1-thread-10] Initializing /data/stefan/001_q07.txt: [testng] 07:49:13,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:49:13,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:49:13,858 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-18_07-49-13.log] [testng] 07:49:13,858 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6072df87 - End of configuration. [testng] [2024-10-18 07:49:34,301] [pool-1-thread-9] Initializing /data/stefan/001_q13.txt: [testng] 07:49:34,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:49:34,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:49:34,302 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-18_07-49-34.log] [testng] 07:49:34,302 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f3ae501 - End of configuration. [testng] [2024-10-18 07:49:46,966] [pool-1-thread-8] Initializing /data/stefan/001_q18.txt: [testng] 07:49:46,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:49:46,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:49:46,967 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-18_07-49-46.log] [testng] 07:49:46,968 |-INFO in ch.qos.logback.core.sift.SiftProcessor@492b4022 - End of configuration. [testng] [2024-10-18 07:49:58,790] [pool-1-thread-7] Initializing /data/stefan/001_q01.txt: [testng] 07:49:58,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:49:58,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:49:58,791 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-18_07-49-58.log] [testng] 07:49:58,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@405dec63 - End of configuration. [testng] [2024-10-18 07:50:09,303] [pool-1-thread-6] Initializing /data/stefan/001_q15.txt: [testng] 07:50:09,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:50:09,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:50:09,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-18_07-50-09.log] [testng] 07:50:09,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@458a7717 - End of configuration. [testng] [2024-10-18 07:50:18,859] [pool-1-thread-5] Initializing /data/stefan/001_q10.txt: [testng] 07:50:18,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:50:18,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:50:18,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-18_07-50-18.log] [testng] 07:50:18,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cb2a135 - End of configuration. [testng] [2024-10-18 07:50:36,336] [pool-1-thread-4] Initializing /data/stefan/001_q05.txt: [testng] 07:50:36,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:50:36,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:50:36,337 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-18_07-50-36.log] [testng] 07:50:36,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fa846eb - End of configuration. [testng] [2024-10-18 07:50:50,687] [pool-1-thread-3] Initializing /data/stefan/001_q09.txt: [testng] 07:50:50,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:50:50,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:50:50,687 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-18_07-50-50.log] [testng] 07:50:50,688 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cc8f2e9 - End of configuration. [testng] [2024-10-18 07:51:14,353] [pool-1-thread-2] Initializing /data/stefan/001_q06.txt: [testng] 07:51:14,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:51:14,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:51:14,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-18_07-51-14.log] [testng] 07:51:14,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38c39606 - End of configuration. [testng] [2024-10-18 07:53:33,329] [pool-1-thread-1] Initializing /data/stefan/001_q14.txt: [testng] [2024-10-18 07:53:38,840] [pool-1-thread-11] Initializing /data/stefan/001_q16.txt: [testng] [2024-10-18 07:53:47,567] [pool-1-thread-7] Initializing /data/stefan/001_q08.txt: [testng] [2024-10-18 07:54:10,030] [pool-1-thread-4] Initializing /data/stefan/001_q12.txt: [testng] [2024-10-18 07:54:32,365] [pool-1-thread-9] Initializing /data/stefan/001_q02.txt: [testng] [2024-10-18 07:54:43,812] [pool-1-thread-6] Initializing /data/stefan/001_q17.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 13 minutes 28 seconds Finished: SUCCESS