![[Jenkins]](/jenkins/static/d8ca237c/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 227 originally caused by: Started by upstream project "Trigger" build number 252 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins1336163837198715195.sh + '[' specs = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35570_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 08:19:51,937 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:19:51,939 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 08:19:51,939 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:19:51,940 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:19:51,940 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:19:51,940 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:19:51,941 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:19:51,941 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:19:51,941 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:19:51,941 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:19:51,941 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:19:51,941 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:19:52,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:19:52,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:19:52,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:19:52,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:19:52,206 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:19:52,206 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:19:52,206 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:19:52,207 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:19:52,207 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 08:19:52,207 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 08:19:52,208 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 267 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-18 08:19:52,217] [main] java.version = 1.8.0_342 [testng] 08:19:52,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:19:52,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:19:52,265 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-18_08-19-52.log] [testng] 08:19:52,267 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-18 08:19:52,276] [main] testng.directory = /data [testng] [2024-10-18 08:19:52,276] [main] testng.configDirectory = /config [testng] [2024-10-18 08:19:52,288] [main] testng.multiplier = 1.0 [testng] [2024-10-18 08:19:52,289] [main] testng.in-memory = false [testng] [2024-10-18 08:19:52,289] [main] testng.allow-missing = false [testng] [2024-10-18 08:19:52,289] [main] user.language = en [testng] [2024-10-18 08:19:52,289] [main] user.country = ${user.country} [testng] [2024-10-18 08:19:52,289] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-18 09:02:22,788] [main] ---------------------------------------- [testng] [2024-10-18 09:02:22,789] [main] Total files: 226 [testng] [2024-10-18 09:02:22,789] [main] Scan time: 2550.499 s (11285 ms/file) [testng] [2024-10-18 09:02:22,789] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-18 09:37:00,527] [pool-1-thread-1] Initializing /data/iplab/Blend_Fitc.IPL: [testng] 09:37:00,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:37:00,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:00,529 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-18_09-37-00.log] [testng] 09:37:00,530 |-INFO in ch.qos.logback.core.sift.SiftProcessor@277f187c - End of configuration. [testng] [2024-10-18 09:37:01,057] [pool-1-thread-12] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] 09:37:01,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:37:01,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:01,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-18_09-37-01.log] [testng] 09:37:01,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@741fabcc - End of configuration. [testng] [2024-10-18 09:37:04,591] [pool-1-thread-11] Initializing /data/fluoview/Sample_XT.tif: [testng] 09:37:04,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:37:04,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:04,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-18_09-37-04.log] [testng] 09:37:04,592 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12d6ea29 - End of configuration. [testng] [2024-10-18 09:37:08,213] [pool-1-thread-10] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] 09:37:08,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:37:08,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:08,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-18_09-37-08.log] [testng] 09:37:08,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6af5bf2d - End of configuration. [testng] [2024-10-18 09:37:08,976] [pool-1-thread-9] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] 09:37:08,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:37:08,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:08,976 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-18_09-37-08.log] [testng] 09:37:08,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27fd4c2 - End of configuration. [testng] [2024-10-18 09:37:12,668] [pool-1-thread-8] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] 09:37:12,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:37:12,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:12,669 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-18_09-37-12.log] [testng] 09:37:12,669 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49145fd4 - End of configuration. [testng] [2024-10-18 09:37:16,498] [pool-1-thread-7] Initializing /data/iplab/Blend_Final.IPL: [testng] 09:37:16,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:37:16,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:16,499 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-18_09-37-16.log] [testng] 09:37:16,499 |-INFO in ch.qos.logback.core.sift.SiftProcessor@190a078f - End of configuration. [testng] [2024-10-18 09:37:17,081] [pool-1-thread-6] Initializing /data/fluoview/Sample_XYT.TIF: [testng] 09:37:17,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:37:17,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:17,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-18_09-37-17.log] [testng] 09:37:17,082 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dfd1dee - End of configuration. [testng] [2024-10-18 09:37:21,199] [pool-1-thread-5] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] 09:37:21,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:37:21,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:21,201 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-18_09-37-21.log] [testng] 09:37:21,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4487cc96 - End of configuration. [testng] [2024-10-18 09:37:21,960] [pool-1-thread-4] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] 09:37:21,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:37:21,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:21,961 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-18_09-37-21.log] [testng] 09:37:21,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67c2c8f7 - End of configuration. [testng] [2024-10-18 09:37:22,526] [pool-1-thread-3] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] 09:37:22,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:37:22,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:22,527 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-18_09-37-22.log] [testng] 09:37:22,527 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b046d7 - End of configuration. [testng] [2024-10-18 09:37:26,231] [pool-1-thread-2] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] 09:37:26,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:37:26,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:26,232 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-18_09-37-26.log] [testng] 09:37:26,232 |-INFO in ch.qos.logback.core.sift.SiftProcessor@199a581e - End of configuration. [testng] [2024-10-18 09:37:39,028] [pool-1-thread-4] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2024-10-18 09:37:43,082] [pool-1-thread-7] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] [2024-10-18 09:37:47,757] [pool-1-thread-1] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2024-10-18 09:37:51,283] [pool-1-thread-5] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2024-10-18 09:37:52,125] [pool-1-thread-10] Initializing /data/iplab/Blend_Tritc.IPL: [testng] [2024-10-18 09:38:01,563] [pool-1-thread-10] Initializing /data/fluoview/SpineAnimation.avi: [testng] [2024-10-18 09:38:03,800] [pool-1-thread-5] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2024-10-18 09:38:09,154] [pool-1-thread-12] Initializing /data/iplab/Chromosomes.IPL: [testng] [2024-10-18 09:38:09,868] [pool-1-thread-9] Initializing /data/iplab/3t3 Cell.IPL: [testng] [2024-10-18 09:38:10,573] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] [2024-10-18 09:38:14,372] [pool-1-thread-8] Initializing /data/iplab/Actin.IPL: [testng] [2024-10-18 09:38:14,897] [pool-1-thread-6] Initializing /data/fluoview/SpineAnimation.tif: [testng] [2024-10-18 09:38:18,468] [pool-1-thread-11] Initializing /data/iplab/Color Histology.IPL: [testng] [2024-10-18 09:38:22,586] [pool-1-thread-5] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2024-10-18 09:38:24,696] [pool-1-thread-10] Initializing /data/iplab/Color Image.IPL: [testng] [2024-10-18 09:38:25,605] [pool-1-thread-7] Initializing /data/iplab/16Bit XRay.IPL: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 79 minutes 5 seconds Finished: SUCCESS