![[Jenkins]](/jenkins/static/d8ca237c/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 227 originally caused by: Started by upstream project "Trigger" build number 252 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins1553337298989533750.sh + '[' gatan-dm2 = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35610_merge_ci -v /uod/idr/repos/curated/gatan-dm2:/data -v /uod/idr-scratch/merge-ci/curated/gatan-dm2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 10:33:01,135 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 10:33:01,137 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 10:33:01,137 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:33:01,138 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:33:01,139 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 10:33:01,139 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 10:33:01,139 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 10:33:01,139 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:33:01,140 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:33:01,140 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 10:33:01,140 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 10:33:01,140 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 10:33:01,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 10:33:01,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 10:33:01,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 10:33:01,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 10:33:01,436 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 10:33:01,436 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 10:33:01,436 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 10:33:01,436 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 10:33:01,436 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 10:33:01,437 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 10:33:01,437 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 297 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-18 10:33:01,448] [main] java.version = 1.8.0_342 [testng] 10:33:01,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 10:33:01,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:33:01,499 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-18_10-33-01.log] [testng] 10:33:01,501 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-18 10:33:01,503] [main] testng.directory = /data [testng] [2024-10-18 10:33:01,504] [main] testng.configDirectory = /config [testng] [2024-10-18 10:33:01,517] [main] testng.multiplier = 1.0 [testng] [2024-10-18 10:33:01,517] [main] testng.in-memory = false [testng] [2024-10-18 10:33:01,518] [main] testng.allow-missing = false [testng] [2024-10-18 10:33:01,518] [main] user.language = en [testng] [2024-10-18 10:33:01,518] [main] user.country = ${user.country} [testng] [2024-10-18 10:33:01,518] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-18 10:33:10,433] [main] ---------------------------------------- [testng] [2024-10-18 10:33:10,433] [main] Total files: 25 [testng] [2024-10-18 10:33:10,433] [main] Scan time: 8.915 s (356 ms/file) [testng] [2024-10-18 10:33:10,434] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-18 10:33:20,824] [pool-1-thread-1] Initializing /data/imagic/1-1.dm2: [testng] 10:33:20,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 10:33:20,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:33:20,826 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-18_10-33-20.log] [testng] 10:33:20,826 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ca23f5d - End of configuration. [testng] [2024-10-18 10:33:20,969] [pool-1-thread-12] Initializing /data/pang/screen capture of metadata/tem_dm_microscope_info.png: [testng] 10:33:20,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 10:33:20,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:33:20,970 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-18_10-33-20.log] [testng] 10:33:20,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16e199f3 - End of configuration. [testng] [2024-10-18 10:33:20,996] [pool-1-thread-11] Initializing /data/imagic/not read correctly/Abeta Moon.dm2: [testng] 10:33:20,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 10:33:20,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:33:20,997 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-18_10-33-20.log] [testng] 10:33:20,997 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b8b99b6 - End of configuration. [testng] [2024-10-18 10:33:21,132] [pool-1-thread-10] Initializing /data/imagic/TEM 10118.dm2: [testng] 10:33:21,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 10:33:21,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:33:21,133 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-18_10-33-21.log] [testng] 10:33:21,134 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d337c7e - End of configuration. [testng] [2024-10-18 10:33:21,294] [pool-1-thread-9] Initializing /data/pang/unproc-auto: [testng] 10:33:21,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 10:33:21,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:33:21,296 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-18_10-33-21.log] [testng] 10:33:21,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ede3373 - End of configuration. [testng] [2024-10-18 10:33:21,476] [pool-1-thread-8] Initializing /data/pang/grating025k.dm2: [testng] 10:33:21,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 10:33:21,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:33:21,477 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-18_10-33-21.log] [testng] 10:33:21,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@256254b9 - End of configuration. [testng] [2024-10-18 10:33:21,635] [pool-1-thread-7] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info2.png: [testng] 10:33:21,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 10:33:21,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:33:21,636 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-18_10-33-21.log] [testng] 10:33:21,636 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5462f2c4 - End of configuration. [testng] [2024-10-18 10:33:21,668] [pool-1-thread-6] Initializing /data/pang/DLMeD2E1_010500x03.dm2: [testng] 10:33:21,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 10:33:21,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:33:21,670 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-18_10-33-21.log] [testng] 10:33:21,670 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bd587da - End of configuration. [testng] [2024-10-18 10:33:21,835] [pool-1-thread-5] Initializing /data/pang/10500x-o4: [testng] 10:33:21,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 10:33:21,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:33:21,836 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-18_10-33-21.log] [testng] 10:33:21,836 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bab1efc - End of configuration. [testng] [2024-10-18 10:33:22,009] [pool-1-thread-4] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info1.png: [testng] 10:33:22,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 10:33:22,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:33:22,010 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-18_10-33-22.log] [testng] 10:33:22,011 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b112ddf - End of configuration. [testng] [2024-10-18 10:33:22,042] [pool-1-thread-3] Initializing /data/pang/screen capture of metadata/tem_dm_keywords_info.png: [testng] 10:33:22,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 10:33:22,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:33:22,043 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-18_10-33-22.log] [testng] 10:33:22,044 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52b2536e - End of configuration. [testng] [2024-10-18 10:33:22,077] [pool-1-thread-2] Initializing /data/imagic/not read correctly/Zucchini_preview.png: [testng] 10:33:22,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 10:33:22,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:33:22,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-18_10-33-22.log] [testng] 10:33:22,079 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6664e677 - End of configuration. [testng] [2024-10-18 10:33:24,486] [pool-1-thread-7] Initializing /data/imagic/not read correctly/Zucchini.dm2: [testng] [2024-10-18 10:33:24,717] [pool-1-thread-3] Initializing /data/pang/screen capture of metadata/tem_dm_general_info.png: [testng] [2024-10-18 10:33:24,753] [pool-1-thread-12] Initializing /data/imagic/Histiocyte in Skin Dermis.dm2: [testng] [2024-10-18 10:33:24,951] [pool-1-thread-2] Initializing /data/imagic/13008.dm2: [testng] [2024-10-18 10:33:25,135] [pool-1-thread-4] Initializing /data/imagic/not read correctly/Abeta Moon_preview.png: [testng] [2024-10-18 10:33:25,313] [pool-1-thread-11] Initializing /data/pang/signed: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 28 seconds Finished: SUCCESS