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Started by upstream project "BIOFORMATS-test-repo" build number 227 originally caused by: Started by upstream project "Trigger" build number 252 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins13680373598486878833.sh + '[' mrw = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35638_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 11:29:46,575 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 11:29:46,577 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 11:29:46,577 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:29:46,578 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:29:46,578 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:29:46,578 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:29:46,578 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:29:46,578 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:29:46,579 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:29:46,579 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:29:46,579 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:29:46,579 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:29:46,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:29:46,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:29:46,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:29:46,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:29:46,838 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:29:46,838 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:29:46,838 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:29:46,839 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:29:46,839 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 11:29:46,840 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 11:29:46,840 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 261 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-18 11:29:46,853] [main] java.version = 1.8.0_342 [testng] 11:29:46,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:29:46,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:29:46,901 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-18_11-29-46.log] [testng] 11:29:46,903 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-18 11:29:46,905] [main] testng.directory = /data [testng] [2024-10-18 11:29:46,905] [main] testng.configDirectory = /config [testng] [2024-10-18 11:29:46,917] [main] testng.multiplier = 1.0 [testng] [2024-10-18 11:29:46,917] [main] testng.in-memory = false [testng] [2024-10-18 11:29:46,917] [main] testng.allow-missing = false [testng] [2024-10-18 11:29:46,917] [main] user.language = en [testng] [2024-10-18 11:29:46,918] [main] user.country = ${user.country} [testng] [2024-10-18 11:29:46,918] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-18 11:29:47,420] [main] ---------------------------------------- [testng] [2024-10-18 11:29:47,420] [main] Total files: 19 [testng] [2024-10-18 11:29:47,420] [main] Scan time: 0.502 s (26 ms/file) [testng] [2024-10-18 11:29:47,420] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 19 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-18 11:29:56,284] [pool-1-thread-1] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw: [testng] 11:29:56,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:29:56,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:29:56,285 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-18_11-29-56.log] [testng] 11:29:56,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17c7167 - End of configuration. [testng] [2024-10-18 11:29:56,792] [pool-1-thread-12] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw: [testng] 11:29:56,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:29:56,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:29:56,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-18_11-29-56.log] [testng] 11:29:56,793 |-INFO in ch.qos.logback.core.sift.SiftProcessor@adf987f - End of configuration. [testng] [2024-10-18 11:29:57,328] [pool-1-thread-11] Initializing /data/samples/05-Sep-07_nyc_0531.mrw: [testng] 11:29:57,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:29:57,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:29:57,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-18_11-29-57.log] [testng] 11:29:57,330 |-INFO in ch.qos.logback.core.sift.SiftProcessor@141ac574 - End of configuration. [testng] [2024-10-18 11:29:57,837] [pool-1-thread-10] Initializing /data/samples/400R PICT0003.MRW: [testng] 11:29:57,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:29:57,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:29:57,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-18_11-29-57.log] [testng] 11:29:57,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a283f48 - End of configuration. [testng] [2024-10-18 11:29:58,530] [pool-1-thread-9] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw: [testng] 11:29:58,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:29:58,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:29:58,531 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-18_11-29-58.log] [testng] 11:29:58,531 |-INFO in ch.qos.logback.core.sift.SiftProcessor@563f85a4 - End of configuration. [testng] [2024-10-18 11:29:59,015] [pool-1-thread-8] Initializing /data/samples/05-Sep-03_duperele_0472.mrw: [testng] 11:29:59,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:29:59,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:29:59,017 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-18_11-29-59.log] [testng] 11:29:59,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20c37a17 - End of configuration. [testng] [2024-10-18 11:29:59,439] [pool-1-thread-7] Initializing /data/samples/05-Sep-22_statua_0818.mrw: [testng] 11:29:59,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:29:59,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:29:59,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-18_11-29-59.log] [testng] 11:29:59,441 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7acddea - End of configuration. [testng] [2024-10-18 11:29:59,902] [pool-1-thread-6] Initializing /data/samples/05-Sep-14_sigma_0698.mrw: [testng] 11:29:59,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:29:59,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:29:59,903 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-18_11-29-59.log] [testng] 11:29:59,904 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10f2d91d - End of configuration. [testng] [2024-10-18 11:30:00,295] [pool-1-thread-5] Initializing /data/samples/05-Sep-22_statua_0800.mrw: [testng] 11:30:00,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:30:00,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:30:00,297 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-18_11-30-00.log] [testng] 11:30:00,297 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48519a86 - End of configuration. [testng] [2024-10-18 11:30:00,731] [pool-1-thread-4] Initializing /data/samples/05-Aug-21_duperele_0353.mrw: [testng] 11:30:00,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:30:00,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:30:00,732 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-18_11-30-00.log] [testng] 11:30:00,732 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5382370 - End of configuration. [testng] [2024-10-18 11:30:01,223] [pool-1-thread-3] Initializing /data/samples/100R PICT0001.MRW: [testng] 11:30:01,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:30:01,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:30:01,224 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-18_11-30-01.log] [testng] 11:30:01,225 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38e0feb9 - End of configuration. [testng] [2024-10-18 11:30:01,606] [pool-1-thread-2] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw: [testng] 11:30:01,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:30:01,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:30:01,607 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-18_11-30-01.log] [testng] 11:30:01,608 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f784c8a - End of configuration. [testng] [2024-10-18 11:30:11,402] [pool-1-thread-11] Initializing /data/samples/1600R PICT0005.MRW: [testng] [2024-10-18 11:30:11,761] [pool-1-thread-5] Initializing /data/samples/800R PICT0010.MRW: [testng] [2024-10-18 11:30:12,144] [pool-1-thread-9] Initializing /data/samples/05-Sep-22_statua_0837.mrw: [testng] [2024-10-18 11:30:12,506] [pool-1-thread-4] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw: [testng] [2024-10-18 11:30:12,828] [pool-1-thread-1] Initializing /data/samples/200R PICT0002.MRW: [testng] [2024-10-18 11:30:13,140] [pool-1-thread-2] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw: [testng] [2024-10-18 11:30:13,468] [pool-1-thread-12] Initializing /data/samples/3200R PICT0006.MRW: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1007, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 37 seconds Finished: SUCCESS