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Started by upstream project "BIOFORMATS-test-repo" build number 227 originally caused by: Started by upstream project "Trigger" build number 252 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins10742629676107236741.sh + '[' apng = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35670_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 12:06:14,303 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 12:06:14,304 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 12:06:14,304 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:06:14,305 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:06:14,306 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 12:06:14,306 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 12:06:14,306 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 12:06:14,306 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:06:14,307 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:06:14,307 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 12:06:14,307 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 12:06:14,307 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 12:06:14,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 12:06:14,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 12:06:14,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 12:06:14,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 12:06:14,564 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 12:06:14,564 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 12:06:14,564 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 12:06:14,564 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 12:06:14,564 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 12:06:14,565 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 12:06:14,565 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 258 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-18 12:06:14,575] [main] java.version = 1.8.0_342 [testng] 12:06:14,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 12:06:14,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:06:14,623 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-18_12-06-14.log] [testng] 12:06:14,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-18 12:06:14,627] [main] testng.directory = /data [testng] [2024-10-18 12:06:14,627] [main] testng.configDirectory = /config [testng] [2024-10-18 12:06:14,639] [main] testng.multiplier = 1.0 [testng] [2024-10-18 12:06:14,639] [main] testng.in-memory = false [testng] [2024-10-18 12:06:14,639] [main] testng.allow-missing = false [testng] [2024-10-18 12:06:14,639] [main] user.language = en [testng] [2024-10-18 12:06:14,639] [main] user.country = ${user.country} [testng] [2024-10-18 12:06:14,639] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-18 12:06:15,189] [main] ---------------------------------------- [testng] [2024-10-18 12:06:15,190] [main] Total files: 21 [testng] [2024-10-18 12:06:15,190] [main] Scan time: 0.55 s (26 ms/file) [testng] [2024-10-18 12:06:15,190] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-18 12:06:17,141] [pool-1-thread-1] Initializing /data/samples/daniel_coltri_two.png: [testng] 12:06:17,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 12:06:17,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:06:17,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-18_12-06-17.log] [testng] 12:06:17,143 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a94f4c7 - End of configuration. [testng] [2024-10-18 12:06:17,187] [pool-1-thread-12] Initializing /data/samples/atom.png: [testng] 12:06:17,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 12:06:17,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:06:17,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-18_12-06-17.log] [testng] 12:06:17,189 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14ccb614 - End of configuration. [testng] [2024-10-18 12:06:17,217] [pool-1-thread-11] Initializing /data/colin/test.sfstdge.png: [testng] 12:06:17,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 12:06:17,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:06:17,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-18_12-06-17.log] [testng] 12:06:17,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@715fd203 - End of configuration. [testng] [2024-10-18 12:06:17,226] [pool-1-thread-10] Initializing /data/samples/william_wong01.png: [testng] 12:06:17,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 12:06:17,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:06:17,227 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-18_12-06-17.log] [testng] 12:06:17,228 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55979d66 - End of configuration. [testng] [2024-10-18 12:06:17,240] [pool-1-thread-9] Initializing /data/samples/william_wong05.png: [testng] 12:06:17,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 12:06:17,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:06:17,242 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-18_12-06-17.log] [testng] 12:06:17,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2656b5fb - End of configuration. [testng] [2024-10-18 12:06:17,255] [pool-1-thread-8] Initializing /data/qa-7473/n.tif: [testng] 12:06:17,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 12:06:17,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:06:17,256 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-18_12-06-17.log] [testng] 12:06:17,257 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b47ddd1 - End of configuration. [testng] [2024-10-18 12:06:17,588] [pool-1-thread-7] Initializing /data/samples/monkey_apng.png: [testng] 12:06:17,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 12:06:17,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:06:17,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-18_12-06-17.log] [testng] 12:06:17,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53909980 - End of configuration. [testng] [2024-10-18 12:06:17,603] [pool-1-thread-6] Initializing /data/samples/phug_logo.png: [testng] 12:06:17,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 12:06:17,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:06:17,605 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-18_12-06-17.log] [testng] 12:06:17,605 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6114061c - End of configuration. [testng] [2024-10-18 12:06:17,614] [pool-1-thread-5] Initializing /data/samples/spinfox.png: [testng] 12:06:17,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 12:06:17,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:06:17,615 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-18_12-06-17.log] [testng] 12:06:17,616 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69c30a50 - End of configuration. [testng] [2024-10-18 12:06:17,626] [pool-1-thread-4] Initializing /data/samples/MoonPhases.png: [testng] 12:06:17,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 12:06:17,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:06:17,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-18_12-06-17.log] [testng] 12:06:17,628 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e781352 - End of configuration. [testng] [2024-10-18 12:06:17,640] [pool-1-thread-3] Initializing /data/samples/orbit.png: [testng] 12:06:17,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 12:06:17,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:06:17,641 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-18_12-06-17.log] [testng] 12:06:17,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@764b946a - End of configuration. [testng] [2024-10-18 12:06:17,652] [pool-1-thread-2] Initializing /data/samples/joanna_viera01.png: [testng] 12:06:17,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 12:06:17,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:06:17,654 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-18_12-06-17.log] [testng] 12:06:17,654 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75c32d19 - End of configuration. [testng] [2024-10-18 12:06:19,491] [pool-1-thread-2] Initializing /data/qa-7473/x.png: [testng] [2024-10-18 12:06:19,501] [pool-1-thread-11] Initializing /data/samples/PhugAnimation3.png: [testng] [2024-10-18 12:06:19,513] [pool-1-thread-6] Initializing /data/samples/StarV838.png: [testng] [2024-10-18 12:06:19,522] [pool-1-thread-4] Initializing /data/samples/chompy2.png: [testng] [2024-10-18 12:06:19,531] [pool-1-thread-12] Initializing /data/samples/william_wong02.png: [testng] [2024-10-18 12:06:19,544] [pool-1-thread-3] Initializing /data/samples/daniel_coltri_one.png: [testng] [2024-10-18 12:06:19,573] [pool-1-thread-5] Initializing /data/samples/william_wong04.png: [testng] [2024-10-18 12:06:19,581] [pool-1-thread-7] Initializing /data/samples/Sun.png: [testng] [2024-10-18 12:06:19,589] [pool-1-thread-10] Initializing /data/samples/Matrix.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 seconds Finished: SUCCESS