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Started by upstream project "BIOFORMATS-test-repo" build number 229 originally caused by: Started by upstream project "Trigger" build number 254 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins14036652094929117011.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35913_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:41:20,797 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:41:20,798 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 01:41:20,798 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:41:20,799 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:41:20,800 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:41:20,800 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:41:20,800 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:41:20,800 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:41:20,801 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:41:20,801 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:41:20,801 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:41:20,802 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:41:20,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:41:20,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:41:20,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:41:20,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:41:20,993 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:41:20,993 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:41:20,993 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:41:20,994 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:41:20,994 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 01:41:20,995 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 01:41:20,995 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 194 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-20 01:41:21,003] [main] java.version = 17.0.2 [testng] 01:41:21,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:41:21,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:41:21,070 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-20_01-41-21.log] [testng] 01:41:21,073 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-20 01:41:21,078] [main] testng.directory = /data [testng] [2024-10-20 01:41:21,079] [main] testng.configDirectory = /config [testng] [2024-10-20 01:41:21,095] [main] testng.multiplier = 1.0 [testng] [2024-10-20 01:41:21,096] [main] testng.in-memory = false [testng] [2024-10-20 01:41:21,097] [main] testng.allow-missing = false [testng] [2024-10-20 01:41:21,097] [main] user.language = en [testng] [2024-10-20 01:41:21,097] [main] user.country = ${user.country} [testng] [2024-10-20 01:41:21,097] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-20 01:41:29,733] [main] ---------------------------------------- [testng] [2024-10-20 01:41:29,734] [main] Total files: 259 [testng] [2024-10-20 01:41:29,734] [main] Scan time: 8.636 s (33 ms/file) [testng] [2024-10-20 01:41:29,734] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-20 01:47:18,638] [pool-1-thread-1] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] 01:47:18,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:47:18,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:18,640 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-20_01-47-18.log] [testng] 01:47:18,640 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6791a85a - End of configuration. [testng] [2024-10-20 01:47:23,501] [pool-1-thread-12] Initializing /data/yasunori/series_1.oib: [testng] 01:47:23,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:47:23,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:23,502 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-20_01-47-23.log] [testng] 01:47:23,503 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32f860d - End of configuration. [testng] [2024-10-20 01:47:23,832] [pool-1-thread-11] Initializing /data/simon/never_worked.oib: [testng] 01:47:23,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:47:23,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:23,833 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-20_01-47-23.log] [testng] 01:47:23,834 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31949e61 - End of configuration. [testng] [2024-10-20 01:47:24,066] [pool-1-thread-10] Initializing /data/satoshi/60x_5x_1.oif: [testng] 01:47:24,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:47:24,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:24,067 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-20_01-47-24.log] [testng] 01:47:24,068 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2878c1ae - End of configuration. [testng] [2024-10-20 01:47:24,352] [pool-1-thread-9] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] 01:47:24,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:47:24,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:24,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-20_01-47-24.log] [testng] 01:47:24,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6057f525 - End of configuration. [testng] [2024-10-20 01:47:24,457] [pool-1-thread-8] Initializing /data/david/Image0016.oif: [testng] 01:47:24,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:47:24,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:24,458 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-20_01-47-24.log] [testng] 01:47:24,459 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f0b629e - End of configuration. [testng] [2024-10-20 01:47:24,624] [pool-1-thread-7] Initializing /data/brian/PA-GFP-3.oib: [testng] 01:47:24,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:47:24,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:24,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-20_01-47-24.log] [testng] 01:47:24,626 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5af2dfdf - End of configuration. [testng] [2024-10-20 01:47:25,005] [pool-1-thread-6] Initializing /data/stefan/cytosol_03e.oib: [testng] 01:47:25,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:47:25,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:25,006 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-20_01-47-25.log] [testng] 01:47:25,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3486388a - End of configuration. [testng] [2024-10-20 01:47:25,684] [pool-1-thread-5] Initializing /data/johannes/Image0010/Image0010.oif: [testng] 01:47:25,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:47:25,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:25,685 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-20_01-47-25.log] [testng] 01:47:25,685 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f4d841e - End of configuration. [testng] [2024-10-20 01:47:25,893] [pool-1-thread-4] Initializing /data/brian/CFP-GFP2.oib: [testng] 01:47:25,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:47:25,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:25,894 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-20_01-47-25.log] [testng] 01:47:25,894 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b45ebd0 - End of configuration. [testng] [2024-10-20 01:47:26,150] [pool-1-thread-3] Initializing /data/glen/seqlinestack.oif: [testng] 01:47:26,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:47:26,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:26,151 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-20_01-47-26.log] [testng] 01:47:26,151 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b07284d - End of configuration. [testng] [2024-10-20 01:47:26,993] [pool-1-thread-2] Initializing /data/glen/Null file/test no change.oif: [testng] 01:47:26,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:47:26,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:26,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-20_01-47-26.log] [testng] 01:47:26,995 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4286258b - End of configuration. [testng] [2024-10-20 01:47:32,799] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-10-20 01:47:33,297] [pool-1-thread-12] Initializing /data/marc/V0606L.oib: [testng] [2024-10-20 01:47:35,354] [pool-1-thread-11] Initializing /data/molly/11OCT7.OIF: [testng] [2024-10-20 01:47:38,963] [pool-1-thread-4] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-10-20 01:47:39,334] [pool-1-thread-7] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-10-20 01:47:41,730] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-10-20 01:47:43,706] [pool-1-thread-4] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-10-20 01:47:44,562] [pool-1-thread-9] Initializing /data/glen/simulstack.oib: [testng] [2024-10-20 01:47:46,233] [pool-1-thread-4] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-10-20 01:47:47,116] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-10-20 01:47:48,220] [pool-1-thread-9] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-10-20 01:47:49,038] [pool-1-thread-2] Initializing /data/marc/V0606J.oib: [testng] [2024-10-20 01:47:52,284] [pool-1-thread-7] Initializing /data/glen/simulstack.oif: [testng] [2024-10-20 01:47:54,801] [pool-1-thread-9] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2024-10-20 01:47:55,183] [pool-1-thread-6] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-10-20 01:47:56,756] [pool-1-thread-12] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-10-20 01:47:58,224] [pool-1-thread-6] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-10-20 01:48:03,802] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-10-20 01:48:07,654] [pool-1-thread-8] Initializing /data/glen/singlesimul.oib: [testng] [2024-10-20 01:48:08,823] [pool-1-thread-2] Initializing /data/glen/seqlinestack.oib: [testng] [2024-10-20 01:48:10,086] [pool-1-thread-8] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-10-20 01:48:12,341] [pool-1-thread-8] Initializing /data/allan/62909#1.oib: [testng] [2024-10-20 01:48:12,604] [pool-1-thread-9] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-10-20 01:48:12,973] [pool-1-thread-2] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-10-20 01:48:15,406] [pool-1-thread-8] Initializing /data/tom/zseries-test.oib: [testng] [2024-10-20 01:48:19,661] [pool-1-thread-9] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-10-20 01:48:20,209] [pool-1-thread-2] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-10-20 01:48:25,675] [pool-1-thread-8] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-10-20 01:48:26,569] [pool-1-thread-9] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-10-20 01:48:28,928] [pool-1-thread-8] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-10-20 01:48:29,997] [pool-1-thread-9] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-10-20 01:48:31,245] [pool-1-thread-6] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-10-20 01:48:32,293] [pool-1-thread-8] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-10-20 01:48:33,411] [pool-1-thread-9] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-10-20 01:48:34,690] [pool-1-thread-6] Initializing /data/molly/11OCT10.OIF: [testng] [2024-10-20 01:48:42,253] [pool-1-thread-5] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-10-20 01:48:42,654] [pool-1-thread-9] Initializing /data/molly/11OCT6.OIF: [testng] [2024-10-20 01:48:49,930] [pool-1-thread-8] Initializing /data/glen/singleseqframe.oif: [testng] [2024-10-20 01:48:50,916] [pool-1-thread-5] Initializing /data/molly/11OCT4.OIF: [testng] [2024-10-20 01:49:00,022] [pool-1-thread-10] Initializing /data/molly/11OCT8.OIF: [testng] [2024-10-20 01:49:14,867] [pool-1-thread-8] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-10-20 01:49:17,621] [pool-1-thread-8] Initializing /data/david/Image0016.oib: [testng] [2024-10-20 01:49:19,834] [pool-1-thread-8] Initializing /data/glen/singleseqline.oif: [testng] [2024-10-20 01:49:41,332] [pool-1-thread-8] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-10-20 01:49:43,592] [pool-1-thread-8] Initializing /data/aryeh/control_test.oib: [testng] [2024-10-20 01:50:07,504] [pool-1-thread-8] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-10-20 01:50:11,695] [pool-1-thread-8] Initializing /data/jae/Image0001.oib: [testng] [2024-10-20 01:50:15,386] [pool-1-thread-8] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-10-20 01:50:20,617] [pool-1-thread-8] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-10-20 01:50:40,475] [pool-1-thread-8] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-10-20 01:50:44,931] [pool-1-thread-8] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-10-20 01:50:46,585] [pool-1-thread-8] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-10-20 01:50:50,387] [pool-1-thread-8] Initializing /data/johannes/step5b.bmp: [testng] [2024-10-20 01:50:52,481] [pool-1-thread-8] Initializing /data/molly/11OCT9.OIF: [testng] [2024-10-20 01:52:38,878] [pool-1-thread-4] Initializing /data/johannes/step4.bmp: [testng] [2024-10-20 01:52:41,748] [pool-1-thread-4] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-10-20 01:52:48,100] [pool-1-thread-4] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-10-20 01:52:56,536] [pool-1-thread-4] Initializing /data/tom/RGB-1.avi: [testng] [2024-10-20 01:53:00,183] [pool-1-thread-4] Initializing /data/yoshihito/XY.oif: [testng] [2024-10-20 01:53:24,719] [pool-1-thread-4] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-10-20 01:53:29,999] [pool-1-thread-4] Initializing /data/glen/4205basal106072.oif: [testng] [2024-10-20 01:57:58,696] [pool-1-thread-7] Initializing /data/sten/01.oib: [testng] [2024-10-20 01:58:02,173] [pool-1-thread-7] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-10-20 01:58:06,671] [pool-1-thread-7] Initializing /data/molly/11OCT3.OIF: [testng] [2024-10-20 01:59:01,340] [pool-1-thread-12] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-10-20 01:59:04,521] [pool-1-thread-12] Initializing /data/glen/singlesimul.oif: [testng] [2024-10-20 01:59:37,702] [pool-1-thread-12] Initializing /data/simon/used_to_work.oib: [testng] [2024-10-20 01:59:42,600] [pool-1-thread-12] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-10-20 01:59:45,509] [pool-1-thread-12] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-10-20 01:59:49,986] [pool-1-thread-12] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-10-20 01:59:52,992] [pool-1-thread-12] Initializing /data/aryeh/1h.oib: [testng] [2024-10-20 01:59:59,896] [pool-1-thread-12] Initializing /data/glen/111407.oif: [testng] [2024-10-20 02:00:08,506] [pool-1-thread-11] Initializing /data/chris/missegragation-15.oib: [testng] [2024-10-20 02:00:11,373] [pool-1-thread-11] Initializing /data/glen/singleseqframe.oib: [testng] [2024-10-20 02:00:14,226] [pool-1-thread-11] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-10-20 02:03:38,131] [pool-1-thread-5] Initializing /data/monica/Image0056.oif: [testng] [2024-10-20 02:04:12,950] [pool-1-thread-5] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-10-20 02:04:16,531] [pool-1-thread-5] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-10-20 02:04:20,213] [pool-1-thread-5] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-10-20 02:04:23,817] [pool-1-thread-5] Initializing /data/yoshihito/XY.oib: [testng] [2024-10-20 02:04:26,677] [pool-1-thread-5] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-10-20 02:05:01,151] [pool-1-thread-3] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-10-20 02:05:13,304] [pool-1-thread-10] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-10-20 02:05:30,685] [pool-1-thread-9] Initializing /data/christian/20min.oif: [testng] [2024-10-20 02:05:39,416] [pool-1-thread-10] Initializing /data/glen/Null file/test change.oif: [testng] [2024-10-20 02:05:42,888] [pool-1-thread-9] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-10-20 02:05:46,459] [pool-1-thread-9] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-10-20 02:05:52,573] [pool-1-thread-2] Initializing /data/glen/notsaturated.oib: [testng] [2024-10-20 02:05:57,004] [pool-1-thread-2] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-10-20 02:06:00,173] [pool-1-thread-10] Initializing /data/brian/Kaede15.oib: [testng] [2024-10-20 02:06:05,383] [pool-1-thread-10] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-10-20 02:06:18,297] [pool-1-thread-2] Initializing /data/glen/Image0002.oif: [testng] [2024-10-20 02:06:43,612] [pool-1-thread-5] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-10-20 02:06:44,516] [pool-1-thread-5] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-10-20 02:06:50,744] [pool-1-thread-5] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-10-20 02:06:56,943] [pool-1-thread-5] Initializing /data/brian/lambda02nm.oib: [testng] [2024-10-20 02:07:00,728] [pool-1-thread-5] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-10-20 02:07:05,059] [pool-1-thread-5] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-10-20 02:07:08,886] [pool-1-thread-5] Initializing /data/michael/CELL3.oib: [testng] [2024-10-20 02:07:11,667] [pool-1-thread-5] Initializing /data/brian/FLIP.oib: [testng] [2024-10-20 02:07:16,480] [pool-1-thread-5] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-10-20 02:07:20,093] [pool-1-thread-5] Initializing /data/johannes/step1.bmp: [testng] [2024-10-20 02:07:21,111] [pool-1-thread-9] Initializing /data/molly/11OCT5.OIF: [testng] [2024-10-20 02:07:29,215] [pool-1-thread-5] Initializing /data/glen/singleseqline.oib: [testng] [2024-10-20 02:07:31,852] [pool-1-thread-5] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-10-20 02:07:42,696] [pool-1-thread-11] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-10-20 02:07:45,627] [pool-1-thread-10] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-10-20 02:07:46,791] [pool-1-thread-11] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-10-20 02:07:48,920] [pool-1-thread-10] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-10-20 02:07:53,758] [pool-1-thread-11] Initializing /data/johannes/step4b.bmp: [testng] [2024-10-20 02:07:55,937] [pool-1-thread-11] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-10-20 02:08:26,643] [pool-1-thread-6] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-10-20 02:08:32,138] [pool-1-thread-6] Initializing /data/molly/11OCT11.OIF: [testng] [2024-10-20 02:08:42,289] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-10-20 02:08:47,467] [pool-1-thread-11] Initializing /data/karl/Image0009.oib: [testng] [2024-10-20 02:08:50,677] [pool-1-thread-11] Initializing /data/molly/11OCT2.OIF: [testng] [2024-10-20 02:09:51,492] [pool-1-thread-12] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-10-20 02:09:55,132] [pool-1-thread-12] Initializing /data/johannes/step3.bmp: [testng] [2024-10-20 02:09:57,084] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-10-20 02:10:02,281] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-10-20 02:10:07,592] [pool-1-thread-12] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-10-20 02:10:12,087] [pool-1-thread-12] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-10-20 02:11:06,734] [pool-1-thread-4] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-10-20 02:11:07,763] [pool-1-thread-3] Initializing /data/glen/notsaturated.oif: [testng] [2024-10-20 02:11:14,435] [pool-1-thread-4] Initializing /data/kay/IM2pg.oib: [testng] [2024-10-20 02:11:19,062] [pool-1-thread-4] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-10-20 02:11:46,715] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-10-20 02:11:51,525] [pool-1-thread-4] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-10-20 02:19:14,491] [pool-1-thread-3] Initializing /data/pedro/plv-test.oib: [testng] [2024-10-20 02:19:19,908] [pool-1-thread-3] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-10-20 02:19:26,532] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-10-20 02:19:33,439] [pool-1-thread-3] Initializing /data/johannes/step2.bmp: [testng] 03:24:51,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:24:51,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:24:51,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-20_03-24-51.log] [testng] 03:24:51,804 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f467bb9 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 103 minutes 34 seconds Finished: SUCCESS